IVF0007115 (gene) Melon (IVF77) v1

Overview


Name	IVF0007115
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr06: 19280697 .. 19281452 (+)
RNA-Seq Expression	IVF0007115
Synteny	IVF0007115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAAGTGCTTTGATTAACTTTTCTGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAACAATGGAAAGATCACTAATCCTGCTTCAGAGCCAAGAATGATGATGACTCCAAAGAAAAAAGAAAGAAAAGTACATGAGTTGAGCTCGACTGAAAGAGTAATGACACATGTATCCTCACCAACAATGGGACAGACAAATTACTCTCTTAGTTATTAGAATGAAGGTTAAAGCCCATTCGGTCAGTCAACTTAGAGAAATACAAGGAACAATTGGAAGCCAACCCGTTTCGATCCCATACCTATGTCGTACATAGAGCTTTTGCCTCAAAGTCATGATCAAGTGGCTATCGTACCACAAGAGCCTCTGCAACCACTCTATTCTAAGTGGTATAACCCCAACGCAAAATATAAATATCATGATGGGGCAGTTGGACATTCTACGGAGAACTGTTTTCCTTTGAAATCTAAAGTACAAAGTCTAGTCAAGGCCAGATGGTTGAAATTCAAGAAGACAAAAGGAGAGCCTTACGTTAACCAAAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTCATAGAAAGATACATGAATAAGGTGTGTGATGTAACTACTTCAATGAATACGCTTTTCCAAATCCTTCATAGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGGGAGAATATTGGATGCGCCAACGGAAGCAGTGTTTATTCCAACCTAA

mRNA sequence

ATGGTTGGAAGTGCTTTGATTAACTTTTCTGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAACAATGGAAAGATCACTAATCCTGCTTCAGAGCCAAGAATGATGATGACTCCAAAGAAAAAAGAAAGAAAAGTACATGAGTTGAGCTCGACTGAAAGAGTAATGACACATGTATCCTCACCAACAATGGGACAGACAAATTACTCTCTTATTGGACATTCTACGGAGAACTGTTTTCCTTTGAAATCTAAAGTACAAAGTCTAGTCAAGGCCAGATGGTTGAAATTCAAGAAGACAAAAGGAGAGCCTTACGTTAACCAAAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTCATAGAAAGATACATGAATAAGGTGTGTGATGTAACTACTTCAATGAATACGCTTTTCCAAATCCTTCATAGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGGGAGAATATTGGATGCGCCAACGGAAGCAGTGTTTATTCCAACCTAA

Coding sequence (CDS)

ATGGTTGGAAGTGCTTTGATTAACTTTTCTGACGTCATAACAATTGGGGAGAGGATTGAATTTGGAGTGAACAATGGAAAGATCACTAATCCTGCTTCAGAGCCAAGAATGATGATGACTCCAAAGAAAAAAGAAAGAAAAGTACATGAGTTGAGCTCGACTGAAAGAGTAATGACACATGTATCCTCACCAACAATGGGACAGACAAATTACTCTCTTATTGGACATTCTACGGAGAACTGTTTTCCTTTGAAATCTAAAGTACAAAGTCTAGTCAAGGCCAGATGGTTGAAATTCAAGAAGACAAAAGGAGAGCCTTACGTTAACCAAAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTTGACACATTCATAGAAAGATACATGAATAAGGTGTGTGATGTAACTACTTCAATGAATACGCTTTTCCAAATCCTTCATAGAGCTGGATATTTGTCACTAAGGTTTAACAATGATGAGGGGAGAATATTGGATGCGCCAACGGAAGCAGTGTTTATTCCAACCTAA

Protein sequence

MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTHVSSPTMGQTNYSLIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEAVFIPT

Homology

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BLAST of IVF0007115 vs. ExPASy TrEMBL
Match: A0A5D3DZH7 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3695G00170 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.6e-67
Identity = 134/178 (75.28%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGERIEFGV NG+IT+ +SE R MMTPKKKE ++HELSST+RV+ H
Sbjct: 14  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVV-H 73

Query: 61  VSSPTMGQTNYS-----LIGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPN 120
           V SP +GQTNYS      +G+STENCFPL++KVQSLVKA+WLKFKKT  EP VNQNPLPN
Sbjct: 74  VFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPN 133

Query: 121 HEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA 174
           +EGP INVVDTF ERY N+VCDVTTSMN LFQILH AGYLS RFNNDEGR LD PT +
Sbjct: 134 NEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRS 190

[Close]

BLAST of IVF0007115 vs. ExPASy TrEMBL
Match: A0A5A7TCG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00600 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.6e-63
Identity = 135/209 (64.59%), Postives = 149/209 (71.29%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGERIEFGV NG+I++PASE R MM+PKKKE ++HELSST+RV+ H
Sbjct: 218 MVGSASTNFSDVITIGERIEFGVKNGRISDPASEIRRMMSPKKKEEEIHELSSTQRVV-H 277

Query: 61  VSSPTMGQTNYS---------------------------------------------LIG 120
           VSSPT+GQTNYS                                             ++G
Sbjct: 278 VSSPTVGQTNYSYSYQNEELLPQLLKSLQVAIVPQELLKPPYPKWYDPNVKCEYHAGVVG 337

Query: 121 HSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKV 165
           HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VDTF ERY NKV
Sbjct: 338 HSTENCFPLKAKVQSLVKAGWLKFKKTEEESDVNQNPLPNHEGPAINIVDTFTERYKNKV 397

[Close]

BLAST of IVF0007115 vs. ExPASy TrEMBL
Match: A0A5A7VBN6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001210 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.9e-62
Identity = 131/206 (63.59%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVIT+GE+IEFGV NG+I++PASE R MMTPKKKE ++HELSST+RV+ H
Sbjct: 194 MVGSASTNFSDVITVGEKIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRVV-H 253

Query: 61  VSSPTMGQTNYS----------------------------------LIGHSTENCFPLKS 120
           VSSPT+GQTNYS                                  ++ HSTENCFPLK+
Sbjct: 254 VSSPTVGQTNYSYSYQNGVAIVPQEPLQPPYPKWYDPNVKCEYHAGVVRHSTENCFPLKA 313

Query: 121 KVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLF 173
           KVQSLVKA WLKFKKT+ E  VNQNP P HEGPAIN+VDTF +RY NKVCDVTTSMNTLF
Sbjct: 314 KVQSLVKAGWLKFKKTEEESDVNQNPSPKHEGPAINIVDTFTKRYKNKVCDVTTSMNTLF 373

[Close]

BLAST of IVF0007115 vs. ExPASy TrEMBL
Match: A0A5D3CYF0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003390 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.5e-60
Identity = 130/213 (61.03%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFS+VITIGERIEFGV NG+IT+ +SE R MMT  KKE ++HELSST+RV+ H
Sbjct: 274 MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVV-H 333

Query: 61  VSSPTMGQTNYS----------------------------------------LIGHSTEN 120
           VSSPTM QTNYS                                         +GHS EN
Sbjct: 334 VSSPTMRQTNYSHKLLPQLLKSHQMAIVPVQPLQPPYLKWYDPNVKCQYHAGAVGHSMEN 393

Query: 121 CFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTT 174
           CFPLK+KVQSLVKA WLKFKK   +  +NQNPLPNHEGP INVVDTF ERY NK+CDVTT
Sbjct: 394 CFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTT 453

[Close]

BLAST of IVF0007115 vs. ExPASy TrEMBL
Match: A0A5A7T401 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00270 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.0e-59
Identity = 130/209 (62.20%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGE IEFGV NG+I +P+SE R MMTPKKKE ++HELSST++V+ H
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVV-H 346

Query: 61  VSSPTMGQTNYS---------------------------------------------LIG 120
           VSSPT+GQ NYS                                             ++G
Sbjct: 347 VSSPTVGQKNYSYNYQNGEFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVG 406

Query: 121 HSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKV 165
           HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VD F +RY NKV
Sbjct: 407 HSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKV 466

[Close]

BLAST of IVF0007115 vs. NCBI nr
Match: TYK28914.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 9.91e-86
Identity = 134/178 (75.28%), Postives = 150/178 (84.27%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGERIEFGV NG+IT+ +SE R MMTPKKKE ++HELSST+RV+ H
Sbjct: 14  MVGSASTNFSDVITIGERIEFGVKNGRITDSSSETRRMMTPKKKEEEIHELSSTQRVV-H 73

Query: 61  VSSPTMGQTNYSL-----IGHSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPN 120
           V SP +GQTNYS      +G+STENCFPL++KVQSLVKA+WLKFKKT  EP VNQNPLPN
Sbjct: 74  VFSPNVGQTNYSPSYQNEVGNSTENCFPLEAKVQSLVKAKWLKFKKTGEEPDVNQNPLPN 133

Query: 121 HEGPAINVVDTFIERYMNKVCDVTTSMNTLFQILHRAGYLSLRFNNDEGRILDAPTEA 173
           +EGP INVVDTF ERY N+VCDVTTSMN LFQILH AGYLS RFNNDEGR LD PT +
Sbjct: 134 NEGPTINVVDTFKERYKNEVCDVTTSMNALFQILHGAGYLSPRFNNDEGRSLDVPTRS 190

[Close]

BLAST of IVF0007115 vs. NCBI nr
Match: KAA0038979.1 (uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (637), Expect = 2.72e-78
Identity = 135/209 (64.59%), Postives = 149/209 (71.29%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGERIEFGV NG+I++PASE R MM+PKKKE ++HELSST+RV+ H
Sbjct: 218 MVGSASTNFSDVITIGERIEFGVKNGRISDPASEIRRMMSPKKKEEEIHELSSTQRVV-H 277

Query: 61  VSSPTMGQTNYS---------------------------------------------LIG 120
           VSSPT+GQTNYS                                             ++G
Sbjct: 278 VSSPTVGQTNYSYSYQNEELLPQLLKSLQVAIVPQELLKPPYPKWYDPNVKCEYHAGVVG 337

Query: 121 HSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKV 164
           HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VDTF ERY NKV
Sbjct: 338 HSTENCFPLKAKVQSLVKAGWLKFKKTEEESDVNQNPLPNHEGPAINIVDTFTERYKNKV 397

[Close]

BLAST of IVF0007115 vs. NCBI nr
Match: KAA0063019.1 (uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (624), Expect = 6.66e-74
Identity = 131/206 (63.59%), Postives = 148/206 (71.84%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVIT+GE+IEFGV NG+I++PASE R MMTPKKKE ++HELSST+RV+ H
Sbjct: 194 MVGSASTNFSDVITVGEKIEFGVKNGRISDPASEIRRMMTPKKKEEEIHELSSTQRVV-H 253

Query: 61  VSSPTMGQTNYS----------------------------------LIGHSTENCFPLKS 120
           VSSPT+GQTNYS                                  ++ HSTENCFPLK+
Sbjct: 254 VSSPTVGQTNYSYSYQNGVAIVPQEPLQPPYPKWYDPNVKCEYHAGVVRHSTENCFPLKA 313

Query: 121 KVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTTSMNTLF 172
           KVQSLVKA WLKFKKT+ E  VNQNP P HEGPAIN+VDTF +RY NKVCDVTTSMNTLF
Sbjct: 314 KVQSLVKAGWLKFKKTEEESDVNQNPSPKHEGPAINIVDTFTKRYKNKVCDVTTSMNTLF 373

[Close]

BLAST of IVF0007115 vs. NCBI nr
Match: TYK16525.1 (uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 2.80e-73
Identity = 130/213 (61.03%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFS+VITIGERIEFGV NG+IT+ +SE R MMT  KKE ++HELSST+RV+ H
Sbjct: 274 MVGSASTNFSNVITIGERIEFGVKNGRITDSSSETRRMMTSNKKEEEIHELSSTQRVV-H 333

Query: 61  VSSPTMGQTNYS----------------------------------------LIGHSTEN 120
           VSSPTM QTNYS                                         +GHS EN
Sbjct: 334 VSSPTMRQTNYSHKLLPQLLKSHQMAIVPVQPLQPPYLKWYDPNVKCQYHAGAVGHSMEN 393

Query: 121 CFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKVCDVTT 173
           CFPLK+KVQSLVKA WLKFKK   +  +NQNPLPNHEGP INVVDTF ERY NK+CDVTT
Sbjct: 394 CFPLKAKVQSLVKAGWLKFKKIGEDSNINQNPLPNHEGPTINVVDTFTERYKNKMCDVTT 453

[Close]

BLAST of IVF0007115 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 238 bits (606), Expect = 6.82e-72
Identity = 130/209 (62.20%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 1   MVGSALINFSDVITIGERIEFGVNNGKITNPASEPRMMMTPKKKERKVHELSSTERVMTH 60
           MVGSA  NFSDVITIGE IEFGV NG+I +P+SE R MMTPKKKE ++HELSST++V+ H
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSEIRRMMTPKKKEEEIHELSSTKKVV-H 346

Query: 61  VSSPTMGQTNYS---------------------------------------------LIG 120
           VSSPT+GQ NYS                                             ++G
Sbjct: 347 VSSPTVGQKNYSYNYQNGEFLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKCEYHVGIVG 406

Query: 121 HSTENCFPLKSKVQSLVKARWLKFKKTKGEPYVNQNPLPNHEGPAINVVDTFIERYMNKV 164
           HSTENCFPLK+KVQSLVKA WLKFKKT+ E  VNQNPLPNHEGPAIN+VD F +RY NKV
Sbjct: 407 HSTENCFPLKAKVQSLVKAGWLKFKKTEEEFDVNQNPLPNHEGPAINIVDIFTKRYKNKV 466

The following BLAST results are available for this feature:

BLAST of IVF0007115 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZH7	8.6e-67	75.28	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369...	[more]
A0A5A7TCG9	2.6e-63	64.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VBN6	4.9e-62	63.59	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CYF0	3.5e-60	61.03	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T401	1.0e-59	62.20	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of IVF0007115 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28914.1	9.91e-86	75.28	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0038979.1	2.72e-78	64.59	uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]	[more]
KAA0063019.1	6.66e-74	63.59	uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]	[more]
TYK16525.1	2.80e-73	61.03	uncharacterized protein E5676_scaffold21G003390 [Cucumis melo var. makuwa]	[more]
XP_016903339.1	6.82e-72	62.20	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]

BLAST of IVF0007115 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007115.1	IVF0007115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity