IVF0007003 (gene) Melon (IVF77) v1

Overview


Name	IVF0007003
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr06: 21268591 .. 21269010 (+)
RNA-Seq Expression	IVF0007003
Synteny	IVF0007003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCAAAAAAGGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTTTGCACCCTCACCTATGAATGCAGATCAATATGCAATGGATTTAGGGTTAACCATGGTAACCCGATCCAAATCAAGATATTTCGACGTACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTGGTCAATCTTATCTGTCCTTCTGTCGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATGGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTATCGCCTCCGATAAACGGTTTGTTCCAAGACACGAGATCAAATCTTATTTTCAAAAACCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATTAA

mRNA sequence

ATGAGTTCAAAAAAGGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTTTGCACCCTCACCTATGAATGCAGATCAATATGCAATGGATTTAGGGTTAACCATGGTAACCCGATCCAAATCAAGATATTTCGACGTACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTGGTCAATCTTATCTGTCCTTCTGTCGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATGGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTATCGCCTCCGATAAACGGTTTGTTCCAAGACACGAGATCAAATCTTATTTTCAAAAACCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATTAA

Coding sequence (CDS)

ATGAGTTCAAAAAAGGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTTTGCACCCTCACCTATGAATGCAGATCAATATGCAATGGATTTAGGGTTAACCATGGTAACCCGATCCAAATCAAGATATTTCGACGTACGGATTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTGGTCAATCTTATCTGTCCTTCTGTCGGAGTCGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATGGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTATCGCCTCCGATAAACGGTTTGTTCCAAGACACGAGATCAAATCTTATTTTCAAAAACCTATCGTTGTTTATGATCCTATCATAGAACCCGAATATTAA

Protein sequence

MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIGSPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEIKSYFQKPIVVYDPIIEPEY

Homology

[Close]

BLAST of IVF0007003 vs. ExPASy TrEMBL
Match: A0A5A7URC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00720 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.7e-51
Identity = 112/135 (82.96%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS+KGSARGRTNSTSSKGNHPSSSSN A SPMN+DQYAMDL  T VTRS+SR   +R G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRPL NLI PS GVVQMRPPTSPSSN ESSTPPTTYSQ +  DKRFVPR +I
Sbjct: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KSYFQKPIVVYDPII 136
           KSYFQKPIVVYDPII
Sbjct: 121 KSYFQKPIVVYDPII 135

[Close]

BLAST of IVF0007003 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 113/139 (81.29%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS KGSARGRTNSTSSKGN P SSSN APSP++ADQYAMDLG T VTR  SR F + IG
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRP  NLI PS GVVQMRPP SPSSN ESSTPPTTYSQ +  DKRFVPR EI
Sbjct: 61  SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 140
           KSYFQKPIVVYDPIIE EY
Sbjct: 121 KSYFQKPIVVYDPIIELEY 139

[Close]

BLAST of IVF0007003 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.4e-50
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS+KGSARGRTNSTSSKG+ PSSSSN  PSPM+A QY MDLG T+VTRS+SR   + IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRP VNLI PS GV+QMRPP SPSSN ESSTPPTTYSQ +  DKRFVPR EI
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 140
           KSYFQK IVVYDPIIEPEY
Sbjct: 121 KSYFQKSIVVYDPIIEPEY 139

[Close]

BLAST of IVF0007003 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 9.7e-50
Identity = 112/139 (80.58%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSSKKGSARGRTNSTSSKGN PSSSSNFAPSPM+ DQYAM LG T +T+SKSR   +RIG
Sbjct: 1   MSSKKGSARGRTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTES TPPRPL NLI PS  VVQMR PTSP SN ESSTPPTTYSQ +  DKRFVPR EI
Sbjct: 61  SPTESLTPPRPLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 140
           KSYFQKP VVYDPIIEP Y
Sbjct: 121 KSYFQKPTVVYDPIIEPGY 139

[Close]

BLAST of IVF0007003 vs. ExPASy TrEMBL
Match: A0A5D3BPD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00610 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.2e-49
Identity = 111/139 (79.86%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSSKKGSARGRTNSTSSKGNH SSSSN APSP  ADQYAM++G T VTRS+SR  ++RIG
Sbjct: 1   MSSKKGSARGRTNSTSSKGNHASSSSNSAPSPTGADQYAMEVGFTTVTRSRSRSSNIRIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           S TES+TPPRP VNLI PS GVVQMRPP SPSSN ESSTP TTYSQ +  DKRFVPR EI
Sbjct: 61  SLTESTTPPRPSVNLIHPSSGVVQMRPPASPSSNRESSTPSTTYSQAVTPDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 140
           KSYFQK IVVYDPIIE EY
Sbjct: 121 KSYFQKLIVVYDPIIELEY 139

[Close]

BLAST of IVF0007003 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (537), Expect = 8.27e-68
Identity = 112/135 (82.96%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS+KGSARGRTNSTSSKGNHPSSSSN A SPMN+DQYAMDL  T VTRS+SR   +R G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRPL NLI PS GVVQMRPPTSPSSN ESSTPPTTYSQ +  DKRFVPR +I
Sbjct: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KSYFQKPIVVYDPII 135
           KSYFQKPIVVYDPII
Sbjct: 121 KSYFQKPIVVYDPII 135

[Close]

BLAST of IVF0007003 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 208 bits (530), Expect = 2.94e-66
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS+KGSARGRTNSTSSKG+ PSSSSN  PSPM+A QY MDLG T+VTRS+SR   + IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRP VNLI PS GV+QMRPP SPSSN ESSTPPTTYSQ +  DKRFVPR EI
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 139
           KSYFQK IVVYDPIIEPEY
Sbjct: 121 KSYFQKSIVVYDPIIEPEY 139

[Close]

BLAST of IVF0007003 vs. NCBI nr
Match: KAA0066384.1 (hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK00900.1 hypothetical protein E5676_scaffold602G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 1.63e-64
Identity = 111/139 (79.86%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSSKKGSARGRTNSTSSKGNH SSSSN APSP  ADQYAM++G T VTRS+SR  ++RIG
Sbjct: 1   MSSKKGSARGRTNSTSSKGNHASSSSNSAPSPTGADQYAMEVGFTTVTRSRSRSSNIRIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           S TES+TPPRP VNLI PS GVVQMRPP SPSSN ESSTP TTYSQ +  DKRFVPR EI
Sbjct: 61  SLTESTTPPRPSVNLIHPSSGVVQMRPPASPSSNRESSTPSTTYSQAVTPDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 139
           KSYFQK IVVYDPIIE EY
Sbjct: 121 KSYFQKLIVVYDPIIELEY 139

[Close]

BLAST of IVF0007003 vs. NCBI nr
Match: KAA0053156.1 (hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 3.44e-64
Identity = 112/139 (80.58%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSSKKGSARGRTNSTSSKGN PSSSSNFAPSPM+ DQYAM LG T +T+SKSR   +RIG
Sbjct: 1   MSSKKGSARGRTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIG 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTES TPPRPL NLI PS  VVQMR PTSP SN ESSTPPTTYSQ +  DKRFVPR EI
Sbjct: 61  SPTESLTPPRPLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEI 120

Query: 121 KSYFQKPIVVYDPIIEPEY 139
           KSYFQKP VVYDPIIEP Y
Sbjct: 121 KSYFQKPTVVYDPIIEPGY 139

[Close]

BLAST of IVF0007003 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (506), Expect = 4.37e-63
Identity = 107/135 (79.26%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MSSKKGSARGRTNSTSSKGNHPSSSSNFAPSPMNADQYAMDLGLTMVTRSKSRYFDVRIG 60
           MSS+KGS RGRTNSTSSKGN PSSSSN APSPM+ADQY MDLG T V RS+SR   +R  
Sbjct: 1   MSSEKGSPRGRTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTE 60

Query: 61  SPTESSTPPRPLVNLICPSVGVVQMRPPTSPSSNGESSTPPTTYSQVIASDKRFVPRHEI 120
           SPTESSTPPRPL NLI PS  VVQMRPP SPSSN ESSTPPTTYSQ +  DKRFVPR +I
Sbjct: 61  SPTESSTPPRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120

Query: 121 KSYFQKPIVVYDPII 135
           KSYFQKPIVVYDPII
Sbjct: 121 KSYFQKPIVVYDPII 135

The following BLAST results are available for this feature:

BLAST of IVF0007003 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URC1	6.7e-51	82.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TM80	2.0e-50	81.29	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
E5GCE6	4.4e-50	79.86	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7UFZ9	9.7e-50	80.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPD3	8.2e-49	79.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0007003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056175.1	8.27e-68	82.96	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]
ADN34145.1	2.94e-66	79.86	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0066384.1	1.63e-64	79.86	hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa] >TYK0090...	[more]
KAA0053156.1	3.44e-64	80.58	hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]	[more]
TYK11076.1	4.37e-63	79.26	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007003 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007003.1	IVF0007003.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding