IVF0006982 (gene) Melon (IVF77) v1

Overview


Name	IVF0006982
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	cyclin-dependent protein kinase inhibitor SMR3-like
Location	chr12: 2033817 .. 2034356 (+)
RNA-Seq Expression	IVF0006982
Synteny	IVF0006982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCTATTATATATCATCACATCCAAAATTTTCTTTTCCTCAACATCTCCTCTCTCTATATCTCTCAATTTTTTTTTAAAATTAAAAAGAAAAATCCATGCACTTATAATTATTATTTGAATTGAAAAGGGACTCTTCGACTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTGAACTCCATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAAGAAGATGATCAAGAAGAAGATCGACAAGAGGAGACATTAAATGGAAGAAGCAACTCAGTCGTTCAAGATGATGATAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTATTCAGTGCCCGATGGCGCCGAGGAAACCAAAACCTCGACGGTTGACGAAGCGGAAGGCCGTGGAACGACACCGGTTGTTGCTGGATCTGTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGAGTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAAAAGAAACTTAAAAACTTTGATCCATA

mRNA sequence

GCCTCTATTATATATCATCACATCCAAAATTTTCTTTTCCTCAACATCTCCTCTCTCTATATCTCTCAATTTTTTTTTAAAATTAAAAAGAAAAATCCATGCACTTATAATTATTATTTGAATTGAAAAGGGACTCTTCGACTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTGAACTCCATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAAGAAGATGATCAAGAAGAAGATCGACAAGAGGAGACATTAAATGGAAGAAGCAACTCAGTCGTTCAAGATGATGATAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTATTCAGTGCCCGATGGCGCCGAGGAAACCAAAACCTCGACGGTTGACGAAGCGGAAGGCCGTGGAACGACACCGGTTGTTGCTGGATCTGTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGAGTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAAAAGAAACTTAAAAACTTTGATCCATA

Coding sequence (CDS)

ATGGAATTCACTTTTCTTTTGAGATATGTCAATTCCAAAGAAGATGATCAAGAAGAAGATCGACAAGAGGAGACATTAAATGGAAGAAGCAACTCAGTCGTTCAAGATGATGATAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCCACAAGTATTCAGTGCCCGATGGCGCCGAGGAAACCAAAACCTCGACGGTTGACGAAGCGGAAGGCCGTGGAACGACACCGGTTGTTGCTGGATCTGTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGAGTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGGTTAGACAATAA

Protein sequence

MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ

Homology

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BLAST of IVF0006982 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 39/92 (42.39%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 17  QEEDRQEETLNGRSNSVVQDDDN---------GFKTPTSLEHKIP--TSIQCPMAPRKPK 76
           QEED ++  L  R    + D D+         G KTPTS +HKIP      CP APRKPK
Sbjct: 11  QEEDVEKIRLPTRPELDIPDSDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPK 70

Query: 77  PRRL--TKRKAVE---RHRLLLDLSSEIQSLF 93
           P R   TKRK       +R+ +DLS EI+  F
Sbjct: 71  PNRSSGTKRKLTPVNVVNRIPIDLSREIEMFF 102

[Close]

BLAST of IVF0006982 vs. ExPASy TrEMBL
Match: A0A5A7VIY0 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00040 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.8e-52
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA
Sbjct: 20  MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 79

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 110
           PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ
Sbjct: 80  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 128

[Close]

BLAST of IVF0006982 vs. ExPASy TrEMBL
Match: A0A1S4E1K5 (cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=LOC107991540 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.8e-52
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA
Sbjct: 20  MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 79

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 110
           PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ
Sbjct: 80  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 128

[Close]

BLAST of IVF0006982 vs. ExPASy TrEMBL
Match: A0A0A0LY05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLLRYVNSKEDDQEED QEETLNG  ++ V+DDDNGFKTPTSLEHKIPTS+QCPMA
Sbjct: 18  MEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKTPTSLEHKIPTSLQCPMA 77

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 110
           PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ
Sbjct: 78  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 126

[Close]

BLAST of IVF0006982 vs. ExPASy TrEMBL
Match: A0A660KRH4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 1   MEFTFLL-------------RYVNSKEDDQEEDRQEETLNGRSNSV-----VQDDDNGFK 60
           MEF FL+               V  +E+++EE+++++ +N  S +V     V+DD++GFK
Sbjct: 28  MEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPSVTVGEFRDVEDDEDGFK 87

Query: 61  TPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG- 110
           TPTSL+HKIP  +QCP APRKPK   LTKRKA  R R+LLDLS++I++LFP   L  L  
Sbjct: 88  TPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLSNDIEALFPQALLEDLSR 147

[Close]

BLAST of IVF0006982 vs. ExPASy TrEMBL
Match: A0A7N2KPB5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 13  KEDDQEEDRQEETLNGRSNSV----------VQDDDNGFKTPTSLEHKIPTSIQCPMAPR 72
           +E+ QEE+  +  ++  S  V          V+DDD+GF+TPTSL+HKIP S+QCP APR
Sbjct: 66  EEEKQEEEEDKCKISVSSLEVKVPSLGELRDVEDDDDGFRTPTSLDHKIPDSLQCPPAPR 125

Query: 73  KPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 110
           KPKP   TKRKA  R R++LDLS+EI SLFP   LV L  KIKR+R+
Sbjct: 126 KPKPIPSTKRKA-GRRRIMLDLSNEIDSLFPPALLVDLRVKIKRIRR 171

[Close]

BLAST of IVF0006982 vs. NCBI nr
Match: XP_016902107.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >KAA0067708.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK21932.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (533), Expect = 7.90e-68
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA
Sbjct: 20  MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 79

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 109
           PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ
Sbjct: 80  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 128

[Close]

BLAST of IVF0006982 vs. NCBI nr
Match: XP_011658114.1 (cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hypothetical protein Csa_019570 [Cucumis sativus])

HSP 1 Score: 195 bits (495), Expect = 4.61e-62
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLLRYVNSKEDDQEED QEETLNG  ++ V+DDDNGFKTPTSLEHKIPTS+QCPMA
Sbjct: 18  MEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKTPTSLEHKIPTSLQCPMA 77

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 109
           PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ
Sbjct: 78  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVRQ 126

[Close]

BLAST of IVF0006982 vs. NCBI nr
Match: KAG7036922.1 (hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138 bits (347), Expect = 1.39e-39
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLL Y+ SK  D + D + ++        VQDDDNGFKTPTSLEHKIP S++CPMA
Sbjct: 18  MEFTFLLTYLTSKHQDHDLDHESKS--------VQDDDNGFKTPTSLEHKIPASLRCPMA 77

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRV 107
           PRKPK R + KRKAVER RL LDLSSEIQSLFPA+FLVGLGGK+KR+
Sbjct: 78  PRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGGKMKRL 116

[Close]

BLAST of IVF0006982 vs. NCBI nr
Match: KAG6607237.1 (hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (327), Expect = 8.76e-36
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMA 60
           MEFTFLL Y+ SK  D + D + ++        V+DDDNGFKTPTSLEHKIP S++CPMA
Sbjct: 18  MEFTFLLTYLTSKHQDHDLDHESKS--------VEDDDNGFKTPTSLEHKIPASLRCPMA 77

Query: 61  PRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGG 102
           PRKPK R + KRKAVER RL LDLSSEIQSLFPA+FLVGLGG
Sbjct: 78  PRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGG 111

[Close]

BLAST of IVF0006982 vs. NCBI nr
Match: XP_040994038.1 (cyclin-dependent protein kinase inhibitor SMR3-like isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 97.4 bits (241), Expect = 6.27e-23
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 34  VQDDDNGFKTPTSLEHKIPTSIQCPMAPRKPKPRRL-TKRKAVERHRLLLDLSSEIQSLF 93
           V+DDD+GFKTPTSL++KIP  +QCP APRKPKPR + TKR+   R R+LLDLS+EI+SLF
Sbjct: 90  VEDDDDGFKTPTSLDNKIPVVLQCPPAPRKPKPRAVQTKRRGAARRRILLDLSNEIESLF 149

Query: 94  PAEFLVGLGGKIKRVRQ 109
           P   LV L GKIK++ +
Sbjct: 150 PPALLVDLSGKIKKITE 166

[Close]

BLAST of IVF0006982 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.7e-06
Identity = 39/92 (42.39%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 17  QEEDRQEETLNGRSNSVVQDDDN---------GFKTPTSLEHKIP--TSIQCPMAPRKPK 76
           QEED ++  L  R    + D D+         G KTPTS +HKIP      CP APRKPK
Sbjct: 11  QEEDVEKIRLPTRPELDIPDSDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPK 70

Query: 77  PRRL--TKRKAVE---RHRLLLDLSSEIQSLF 93
           P R   TKRK       +R+ +DLS EI+  F
Sbjct: 71  PNRSSGTKRKLTPVNVVNRIPIDLSREIEMFF 102

[Close]

BLAST of IVF0006982 vs. TAIR 10
Match: AT5G59360.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 29/98 (29.59%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 13  KEDDQEEDRQEETLNGRSNSVVQDDDNGFKTPTSLEHKIPTSIQCPMAPRKPKPRRLTKR 72
           ++ DQE +  ++   G+     +D+++  K P +  +        P  PRKPK     KR
Sbjct: 56  RQQDQELENLQDGSRGKRKWECKDEESPVKIPETPRNSNSVCYCPPRPPRKPKAIPSMKR 115

Query: 73  KA--VERHRLLLDLSSEIQSLFPAEFLVGLGGKIKRVR 109
           +   V+R  + LD++ E++S+FP   L   G KIK+ R
Sbjct: 116 RGMWVKRSVVFLDVAREVESMFPPSVLQDFGKKIKKAR 153

The following BLAST results are available for this feature:

BLAST of IVF0006982 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ60	1.2e-04	42.39	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of IVF0006982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIY0	4.8e-52	100.00	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S4E1K5	4.8e-52	100.00	cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LY05	1.2e-47	92.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1	[more]
A0A660KRH4	2.2e-17	46.88	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1	[more]
A0A7N2KPB5	1.1e-16	53.27	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of IVF0006982 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902107.1	7.90e-68	100.00	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >K...	[more]
XP_011658114.1	4.61e-62	92.66	cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hyp...	[more]
KAG7036922.1	1.39e-39	69.16	hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607237.1	8.76e-36	68.63	hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_040994038.1	6.27e-23	63.64	cyclin-dependent protein kinase inhibitor SMR3-like isoform X2 [Juglans microcar...	[more]

BLAST of IVF0006982 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02420.1	8.7e-06	42.39	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT5G59360.1	1.3e-04	29.59	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	PANTHER	PTHR33142:SF66	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 15..109
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 15..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006982.1	IVF0006982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus