IVF0006977 (gene) Melon (IVF77) v1

Overview


Name	IVF0006977
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	high mobility group B protein 1
Location	chr08: 31218769 .. 31222414 (-)
RNA-Seq Expression	IVF0006977
Synteny	IVF0006977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTTTAATCTGATTCTGTTTGTTTTTCCTGTATAATTATCGTCTGTTCTACCTAATTTCTTGCGTTTTTAAGGTCTTGTTGCGTTTTTCCTTCTAATTCTGTGGAGAATGATCGTTTTTTGAGCTATTTGTGCCGTTTTATTTATTTATTTATTATCTTAATAATTTATGCTGGAGTTGTTTTGAGTGAAGTGAAGAAACAAGTAGCAGTACGAGTTCAAGAGTTGAAGTTGTGGTAATTAATTACATTTTAGGTTTATTTTTCAGTTTAATGCTCTGTTAGCGATTTAACACAGGTGATTTTTCTTATGCGATAGACTTAGAGTCGACAGAATCTAGTTTTGCTTTATTGTATGTAGTTTTCTACTGTGAATTATCTGTAGCTGGCTGATTGTTAGTTTGTCGATTCTACAGATAGCTTTTAAAATTGAAATTTAGGGATTCTGGTCTCATTAAGGTCAAATATGTTCAAGAACATGTATAGTATTACTATTTACTTTTGTTTGCTTCTGGATGTCTGGATGTTCATGTTCGGCAGTCATTACGTATCATATAGACTTCGTGTTCCTTTGACTTTTGTGAAAACAGTTTCTAGAGGTTGCTTTCACTGCATTTGTGCACGTTGGCATGTACTTTTATGTTAGAAATTTTGTCTTTATTGTTTCCTGTACTGTTTGAGGTACTGCTCCTTAGTTTGGCTCAAATTGTTCTTGTCCTGATTTTCGTGCATGTAGGTTGTTGTTTCTTAAACTATAGGAGTTGTACTAACTTGCTGTATTGTTATACTGCTGCTCAACGAGTAGTTATTTTGTACAGGTCTTTGCCTTTCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGGTAGTTTTTTGCCTATTGTTCCACTACATGTCTCTTATGTTATTGGTCTGATGAAAGTTCCGTAAATTGTTCAGTTATGCCTGTCTGTGATCCATTGTTGGCATCTTTTTTTTTGAGTATCGAATTTCCAGCAAGTTTTTGACTTCCATTGATGTCTAATATTCACATACTTGGTTATGTGTATACAGTGTTTACAGGAATTTTGTAGTGACGGATCATAAATATCTCATTTCTTTTCAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTGTTCGTATTTGTTCTCTGCCGTTTTGTCTTCATTTGTTTGATTTCCTTAAGAAGAAAAATTCTCTTATTTGGTTATATTTATACAACAGTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTATGTGATCTGTGAAACTGATCTAATGATTCACATAATTCCCAATTGGTGATGCAAATATAGAGTAACTTACTAACATTTTCTCCACTCCTGCAGGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGTAAGTATTATTGTGCATTACATAAAAATGAAAGCATGCTTAATCCTTGAGTTTTTTCCCTTTTTACTGCATGCATTTATGTATGATGATGAATGAAACACTGTTTATAGAGCTGTGGTATTCGTGTTGCTGCCAAATCTTGAAACCAGCGTCACTTTCAGCAATCTTGTATTGAATATCAAGTTGATACGTGTGTGCATGCTTTTTTTCTTTGCCTTTTTCATTTTGTTGTGTTTTAATAATTTTTTATGAGAAATCATAACTTTCATTGAGAAGAAAATGAAATAATATAAGAGCATACAAAAAAACCAATCCACAAAAAACAACTCAACTGAAGGAAGGGAGACCATCTGAAGGCAATGAAAGAATCACAACTTAATAGTTTTTCTGCCTCTGTATTGATATTTTCTTACATTTGGGCATTTACACTTTTATTCTCTCAACAGTATTTTACATTTTGCGTTTCTTTATATAATAACTTCTTAATGGTTTAAAAGGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGTAGTTGTGCTCTGTTTTTTTGTGTATTAATTAAATTTATAAGACATGACTCCAAACTTAAAGTGCTCATACACCTTTTTTCGGGAATATAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGTATTTTTTTAATACATAAGAAGGAAATGCTACAATGCTTGTTTTTAGAGCGTGTCTATGCATTTCAGTTCATAGTAAGCCAATTAAGATCCCTCTCTGCTGTTATTTATTTATTTTTTTTGAAGTTGAAAGTAACAAAAATTTATAGATCAGAGAACACTTTTGGATTAGTTGGTAATAATTTCATTTTCGCACCTTTAAATTTGTAACCATTTGGTTTATGGTCTTTAATAAGTAACAAATCTGATCTCCTTGCTTTATAATTTGTAAGAGTCTATTTCCTATCGTGAAAGCATCTAATCTTCAACGGTATATCAATAAAATTTCATTAAATCATGTCATTCTAAACTCTAGAGAGTAAATTGGTTCTTATTAAGGTTCAAGGACAATTAGTATTGCAACTCCCTCGCAGCCAACGCCAATAACAAGAATGCAATAGAAAGGGCATGGATTTGGTAAAAGTAGAATTAGGGTTTCATAAAATTTGACTATTAAACCACTTGCAGGAGCATCAAGAAGAGGATGATGAGGAGGACGAGGAAGATGATGAAGATGATGACTAAATTGAAAGCCAACTTGTTTGTATCGGCCAACCCAGCTGGTAGAGGGAGGAAGGTGATGTATGTTCATATATCTTTGCATGCTTTCTGTTCATTTTGTATTTGTGTGCAACATGATAACGTGTCAGAATATCTTTACTTGTTTTAATGGTCTCCTTCACTTTACATCCCCTTTGTCATATTACATTGTTAAAATCTTGGGGGTATTTTGGCCTTTCTTTTGATAACCAATATGAAATTATCAAATACATCTTTTGGAAGCTGTACTTCAACCTTTTGCCACCTTTTACTCTTCTAGCGCTCTTCGCAGTTTAAAATCATCTTTGCCAACATTGTAGTCTAACCGATAATTATTATCGATCTTTTAACTGTACAAATTTTAGAGGAATTTCCAG

mRNA sequence

CTAATTTTAATCTGATTCTGTTTGTTTTTCCTGTATAATTATCGTCTGTTCTACCTAATTTCTTGCGTTTTTAAGGTCTTGTTGCGTTTTTCCTTCTAATTCTGTGGAGAATGATCGTTTTTTGAGCTATTTGTGCCGTTTTATTTATTTATTTATTATCTTAATAATTTATGCTGGAGTTGTTTTGAGTGAAGTGAAGAAACAAGTAGCAGTACGAGTTCAAGAGTTGAAGTTGTGTTATTTTGTACAGGTCTTTGCCTTTCATAATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATCAAGAAGAGGATGATGAGGAGGACGAGGAAGATGATGAAGATGATGACTAAATTGAAAGCCAACTTGTTTGTATCGGCCAACCCAGCTGGTAGAGGGAGGAAGGTGATGTATGTTCATATATCTTTGCATGCTTTCTGTTCATTTTGTATTTGTGTGCAACATGATAACGTGTCAGAATATCTTTACTTGTTTTAATGGTCTCCTTCACTTTACATCCCCTTTGTCATATTACATTGTTAAAATCTTGGGGGTATTTTGGCCTTTCTTTTGATAACCAATATGAAATTATCAAATACATCTTTTGGAAGCTGTACTTCAACCTTTTGCCACCTTTTACTCTTCTAGCGCTCTTCGCAGTTTAAAATCATCTTTGCCAACATTGTAGTCTAACCGATAATTATTATCGATCTTTTAACTGTACAAATTTTAGAGGAATTTCCAG

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCCAAAGAAGCTTTGAAGCCAGTCGATGATAGAAAGGTTGGGAAGCGAAAGGCTGTTGTTAAAGCTGACAAGGGTACCAAACGACCAACAAAGAAAGATTTGAAAGCCAAGAAAGATCCCAACAAACCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCCTTGAGGAGTTCAGAAAGGAGTACAAAAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTAAGTCACGCTGAAAAAGCACCATATGAAGCCAAGGCAGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAGGCCAGCGCAGCAGATGACGAAGAATCAGAGAGGTCAAAATCTGAAGTGAATGACGAGGATGAGGCCAGTGAGGAGGAGCATCAAGAAGAGGATGATGAGGAGGACGAGGAAGATGATGAAGATGATGACTAA

Protein sequence

MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD

Homology

[Close]

BLAST of IVF0006977 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-43
Identity = 119/178 (66.85%), Postives = 141/178 (79.21%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEEDEEDDEDDD 171
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++EE+E+DD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDD 174

[Close]

BLAST of IVF0006977 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.5e-28
Identity = 92/163 (56.44%), Postives = 112/163 (68.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K K  S+ +   L       V K+ A  KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+EEFRK + +E+P  KAVSAVGKA G KWK++S AEKAPY AK+ KRK EYEK M
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 120

Query: 121 RAYDSKKA---SAADDEESERSKSEVNDEDEASEEEHQEEDDE 161
           RAY+ K+A   +  D+EESE+S SEVNDED+  E   +EEDD+
Sbjct: 121 RAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of IVF0006977 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-27
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 83
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQEEDDE 161
           SEVNDED+A +   +EEDD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of IVF0006977 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26
Identity = 88/169 (52.07%), Postives = 113/169 (66.86%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K KG S+ +        + K+   K    A KG K+P K   K  KDPNKPKRPPS
Sbjct: 1   MKGGKSKGESKKA--------ETKLAVNKKGAAATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+ +FR++YK+++PN K+V+AVGKA GE+WKSLS  EKAPY  +A K+K EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDD 170
           +AY+ K     D+E S++SKSEVNDEDE          DEEDEED++DD
Sbjct: 121 QAYNKKLEGKDDEEGSDKSKSEVNDEDE----------DEEDEEDEDDD 149

[Close]

BLAST of IVF0006977 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-26
Identity = 82/161 (50.93%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG+K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVF+E+FR+ +K+ENP  K+V+ VGKA G+KWKSLS +EKAPY AKA KRK EYEK +
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 120

Query: 121 RAYDSK-KASAADDEESERSKSEVNDEDEASEEEHQEEDDE 161
           +AY+ K +    +DEES++S SEVNDED+A +   +EEDD+
Sbjct: 121 KAYNKKLEEGPKEDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of IVF0006977 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.0e-74
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 171
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 170

[Close]

BLAST of IVF0006977 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDEEDE+D+EDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDEEDD 169

[Close]

BLAST of IVF0006977 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.1e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 153
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of IVF0006977 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.9e-64
Identity = 155/172 (90.12%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD--EEDEEDDEDDD 171
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ++DD  EED+EDDED+D
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDDDAEEDDEDDEDED 169

[Close]

BLAST of IVF0006977 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.1e-62
Identity = 146/170 (85.88%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKG KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 171
           RAYDSKKAS ADDEE ERSKSEVN ED+ASEEEH E+D+EE+EED++D++
Sbjct: 121 RAYDSKKASEADDEELERSKSEVNGEDDASEEEHHEDDEEEEEEDEDDEE 170

[Close]

BLAST of IVF0006977 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 283 bits (724), Expect = 2.96e-95
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 170
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDDD 170

[Close]

BLAST of IVF0006977 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 276 bits (706), Expect = 1.58e-92
Identity = 165/169 (97.63%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKG KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEEDDEDD 169
           RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDEEDE+D+EDD
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEEDEDDEEDD 169

[Close]

BLAST of IVF0006977 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 268 bits (686), Expect = 1.89e-89
Identity = 157/165 (95.15%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA VKADKG  RPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEA+AAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEED 165
           +AYDSKKASAADDEESERSKSEVNDEDEASEEEHQE+DDE+D+ED
Sbjct: 121 KAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEDDDEDDDED 165

[Close]

BLAST of IVF0006977 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 4.46e-89
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152
           RAYDSKKASAADDEESERSKSEVNDEDEASEE
Sbjct: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEE 152

[Close]

BLAST of IVF0006977 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 251 bits (641), Expect = 1.35e-82
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDD 159
           RAYDSKKAS   DEESERSKSEVNDEDEASEEEHQ++DD
Sbjct: 121 RAYDSKKAS---DEESERSKSEVNDEDEASEEEHQDDDD 156

[Close]

BLAST of IVF0006977 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 181.0 bits (458), Expect = 7.9e-46
Identity = 115/165 (69.70%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEHQEEDDEEDEED 166
            AY+      +D  ESE+S+SE+NDEDEAS EE  ++DD+++EED
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEEDDDDDDDEEED 161

[Close]

BLAST of IVF0006977 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-44
Identity = 119/178 (66.85%), Postives = 141/178 (79.21%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEEDEEDDEDDD 171
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++EE+E+DD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDD 174

[Close]

BLAST of IVF0006977 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-44
Identity = 119/178 (66.85%), Postives = 141/178 (79.21%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEASEEEH--------QEEDDEEDEEDDEDDD 171
            AY+      +D  ESE+S+SE+NDEDEAS EE          +E++EE+E+DD+DDD
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEEELLEKEAAGDDEEEEEEEDDDDDDD 174

[Close]

BLAST of IVF0006977 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 119/183 (65.03%), Postives = 141/183 (77.05%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K TKR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120
           AFFVFLE+FR  +K+ENPNVKAVSAVGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYDSKKASAADDEESERSKSEVNDEDEAS-------------EEEHQEEDDEEDEEDDE 171
            AY+      +D  ESE+S+SE+NDEDEAS             E+E   +D+EE+EE+D+
Sbjct: 121 DAYNKNLEEGSD--ESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDD 179

[Close]

BLAST of IVF0006977 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 0


Query: 24  KVGKRKAVVKADK--GTKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVK 83
           K  K KA  ++ K   TK+P K    A KDPNKPKRP SAFFVF+E+FR  YK E+P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLMRAYDSK-KASAADDEESERSK 143
           +V+AVGKAGGEKWKSLS +EKAPY AKA KRK EYEK M+AY+ K +    +DEES++S 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query: 144 SEVNDEDEASEEEHQEEDDE 161
           SEVNDED+A +   +EEDD+
Sbjct: 122 SEVNDEDDAEDGSEEEEDDD 141

The following BLAST results are available for this feature:

BLAST of IVF0006977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	4.7e-43	66.85	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P26585	5.5e-28	56.44	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	2.1e-27	60.00	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	3.0e-26	52.07	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
O49596	5.2e-26	50.93	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of IVF0006977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BML2	9.0e-74	100.00	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A0A0L1B2	1.1e-71	97.63	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A5A7SRU9	5.1e-69	100.00	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1DBK9	2.9e-64	90.12	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A6J1ISM4	6.1e-62	85.88	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of IVF0006977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449957.1	2.96e-95	100.00	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
XP_011653690.1	1.58e-92	97.63	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_038883904.1	1.89e-89	95.15	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]
KAA0031875.1	4.46e-89	100.00	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]
XP_022151579.1	1.35e-82	91.82	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]

BLAST of IVF0006977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.4	7.9e-46	69.70	high mobility group B1	[more]
AT3G51880.1	3.3e-44	66.85	high mobility group B1	[more]
AT3G51880.3	3.3e-44	66.85	high mobility group B1	[more]
AT3G51880.2	3.7e-43	65.03	high mobility group B1	[more]
AT1G20696.1	1.5e-28	60.00	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 2.4E-25 score: 100.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 1.4E-23 score: 83.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.726849
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 27..140 e-value: 2.5E-25 score: 90.7
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 47..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..111
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..163
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..121 e-value: 2.427E-15 score: 64.9565
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006977.3	IVF0006977.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin