IVF0006942 (gene) Melon (IVF77) v1

Overview


Name	IVF0006942
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr05: 17232494 .. 17232901 (+)
RNA-Seq Expression	IVF0006942
Synteny	IVF0006942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGGAAAAGGGAAGTACTAGAGGAAGAACAAACTCTACTTCTTCAAATGACACTCGCCCATCTTCTTGTTCTTCTAATTCTACACCCTCATCTATGAGTGCAGATCAATATACAATAGATTTAGGGTTTACCATGGTAACCCGATCTAGAACAAGATCGTCCGACATATGGATAGGATCTCCCACGGAGTTATTAACTCCACCTAGGCCTTCGGCTAATCTCATCCGTTCTTTTGGCCGAGTCGTTCAAATGAGGCCTCCTACTTCTTCTTCATCCAATAGGGAGTCTTCTACTCCTTGTACAACTTATTCTCAAGCTGTCACCCTGATAAACGATTTGTGCCAAGACTCGAGATTAAATCTTATTTTAAAAAATCCATCATTATTTATGATCCTATCATAG

mRNA sequence

ATGAGTTCGGAAAAGGGAAGTACTAGAGGAAGAACAAACTCTACTTCTTCAAATGACACTCGCCCATCTTCTTGTTCTTCTAATTCTACACCCTCATCTATGAGTGCAGATCAATATACAATAGATTTAGGGTTTACCATGGTAACCCGATCTAGAACAAGATCGTCCGACATATGGATAGGATCTCCCACGGAGTTATTAACTCCACCTAGGCCTTCGGCTAATCTCATCCGTTCTTTTGGCCGAGTCGTTCAAATGAGGCCTCCTACTTCTTCTTCATCCAATAGGGAGTCTTCTACTCCTTGTACAACTTATTCTCAAGCTGTCACCCTGATAAACGATTTGTGCCAAGACTCGAGATTAAATCTTATTTTAAAAAATCCATCATTATTTATGATCCTATCATAG

Coding sequence (CDS)

ATGAGTTCGGAAAAGGGAAGTACTAGAGGAAGAACAAACTCTACTTCTTCAAATGACACTCGCCCATCTTCTTGTTCTTCTAATTCTACACCCTCATCTATGAGTGCAGATCAATATACAATAGATTTAGGGTTTACCATGGTAACCCGATCTAGAACAAGATCGTCCGACATATGGATAGGATCTCCCACGGAGTTATTAACTCCACCTAGGCCTTCGGCTAATCTCATCCGTTCTTTTGGCCGAGTCGTTCAAATGAGGCCTCCTACTTCTTCTTCATCCAATAGGGAGTCTTCTACTCCTTGTACAACTTATTCTCAAGCTGTCACCCTGATAAACGATTTGTGCCAAGACTCGAGATTAAATCTTATTTTAAAAAATCCATCATTATTTATGATCCTATCATAG

Protein sequence

MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWIGSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTLINDLCQDSRLNLILKNPSLFMILS

Homology

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BLAST of IVF0006942 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 88/111 (79.28%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSSEKGS RGRTNSTSS   RPSS SSNS PS MSA QYT+DLGFT+VTRSR+R S IWI
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSS-SSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTL 112
           GSPTE  TPPRPS NLIR  G V+QMRPP S SSNRESSTP TTYSQAVTL
Sbjct: 61  GSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTL 110

[Close]

BLAST of IVF0006942 vs. ExPASy TrEMBL
Match: A0A5D3DEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00650 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.9e-30
Identity = 92/135 (68.15%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSS+K S R RTNSTSS    PSS SSNS PS MSADQY +DL FT+VTRSR+RS  I I
Sbjct: 1   MSSKKESARVRTNSTSSKRNSPSS-SSNSAPSPMSADQYAMDLRFTIVTRSRSRSFVIRI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTLINDLCQDSR 120
           GSPTE  TPPRPSANLIR  G VVQMRPP S  SNRESSTP TTYSQAVT       + +
Sbjct: 61  GSPTESSTPPRPSANLIRPSGEVVQMRPPASPFSNRESSTPPTTYSQAVTPNKRFVPNLK 120

Query: 121 LNLILKNPSLFMILS 136
            NLI K+ SLF+ILS
Sbjct: 121 SNLIFKSLSLFIILS 134

[Close]

BLAST of IVF0006942 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.9e-30
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSS+KG+ RGRTNSTSS   R SS SSNS PS MSADQY +DLGFT+VTRSR+R S I I
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSS-SSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVT 111
           G PTE  TPPRPSANLIR FGRVVQM+PP S SSNR+SSTP TTYSQAVT
Sbjct: 61  GFPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVT 109

[Close]

BLAST of IVF0006942 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.4e-30
Identity = 86/110 (78.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSSEKGS RGRTNSTSS   RPSS SSNS PS MSADQY +DLGFT V RSR+RSS I  
Sbjct: 1   MSSEKGSPRGRTNSTSSKGNRPSS-SSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRT 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVT 111
            SPTE  TPPRP ANLIR  GRVVQMRPP S SSNRESSTP TTYSQAVT
Sbjct: 61  ESPTESSTPPRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVT 109

[Close]

BLAST of IVF0006942 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.4e-29
Identity = 82/110 (74.55%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSS+KGS RGRTNSTSS   RP S SSNS PS +SADQY +DLGFT VTR  +RS  IWI
Sbjct: 1   MSSDKGSARGRTNSTSSKGNRPPS-SSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVT 111
           GSPTE  TPPRPS NLIR    VVQMRPP S SSNRESSTP TTYSQAVT
Sbjct: 61  GSPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVT 109

[Close]

BLAST of IVF0006942 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 146 bits (368), Expect = 1.06e-41
Identity = 88/111 (79.28%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSSEKGS RGRTNSTSS   RPSS SSNS PS MSA QYT+DLGFT+VTRSR+R S IWI
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSS-SSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTL 111
           GSPTE  TPPRPS NLIR  G V+QMRPP S SSNRESSTP TTYSQAVTL
Sbjct: 61  GSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTL 110

[Close]

BLAST of IVF0006942 vs. NCBI nr
Match: KAA0032939.1 (hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK22024.1 hypothetical protein E5676_scaffold482G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (348), Expect = 3.99e-39
Identity = 92/135 (68.15%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSS+K S R RTNSTSS    PSS SSNS PS MSADQY +DL FT+VTRSR+RS  I I
Sbjct: 1   MSSKKESARVRTNSTSSKRNSPSS-SSNSAPSPMSADQYAMDLRFTIVTRSRSRSFVIRI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTLINDLCQDSR 120
           GSPTE  TPPRPSANLIR  G VVQMRPP S  SNRESSTP TTYSQAVT       + +
Sbjct: 61  GSPTESSTPPRPSANLIRPSGEVVQMRPPASPFSNRESSTPPTTYSQAVTPNKRFVPNLK 120

Query: 121 LNLILKNPSLFMILS 135
            NLI K+ SLF+ILS
Sbjct: 121 SNLIFKSLSLFIILS 134

[Close]

BLAST of IVF0006942 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 8.27e-39
Identity = 86/110 (78.18%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSSEKGS RGRTNSTSS   RPSS SSNS PS MSADQY +DLGFT V RSR+RSS I  
Sbjct: 1   MSSEKGSPRGRTNSTSSKGNRPSS-SSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRT 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVT 110
            SPTE  TPPRP ANLIR  GRVVQMRPP S SSNRESSTP TTYSQAVT
Sbjct: 61  ESPTESSTPPRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVT 109

[Close]

BLAST of IVF0006942 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 1.48e-38
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSS+KG+ RGRTNSTSS   R SS SSNS PS MSADQY +DLGFT+VTRSR+R S I I
Sbjct: 1   MSSKKGNARGRTNSTSSKGNRLSS-SSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVT 110
           G PTE  TPPRPSANLIR FGRVVQM+PP S SSNR+SSTP TTYSQAVT
Sbjct: 61  GFPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVT 109

[Close]

BLAST of IVF0006942 vs. NCBI nr
Match: KAA0060855.1 (hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 4.87e-37
Identity = 85/120 (70.83%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 1   MSSEKGSTRGRTNSTSSNDTRPSSCSSNSTPSSMSADQYTIDLGFTMVTRSRTRSSDIWI 60
           MSSEKGS RGRTNSTSS   RPSS SSNS PS MSADQY +DLGF  VTRSR+RSSDI I
Sbjct: 1   MSSEKGSVRGRTNSTSSKGNRPSS-SSNSAPSPMSADQYAMDLGFATVTRSRSRSSDIRI 60

Query: 61  GSPTELLTPPRPSANLIRSFGRVVQMRPPTSSSSNRESSTPCTTYSQAVTLINDLCQDSR 120
           GS TE  T PRPS NLIR F  VVQMRP    SSNRESSTP T YSQAVT    +C  +R
Sbjct: 61  GSLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPLTAYSQAVTPDKAVCAKTR 119

The following BLAST results are available for this feature:

BLAST of IVF0006942 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCE6	1.8e-32	79.28	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3DEK9	2.9e-30	68.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E4J4	4.9e-30	76.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CKX1	6.4e-30	78.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	5.4e-29	74.55	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0006942 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34145.1	1.06e-41	79.28	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0032939.1	3.99e-39	68.15	hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK2202...	[more]
TYK11076.1	8.27e-39	78.18	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]
KAA0026217.1	1.48e-38	76.36	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]
KAA0060855.1	4.87e-37	70.83	hypothetical protein E6C27_scaffold137G00900 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006942 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006942.1	IVF0006942.1	mRNA