IVF0006897 (gene) Melon (IVF77) v1

Overview
NameIVF0006897
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCell division protein (Chloroplast)
Locationchr06: 6865995 .. 6866292 (-)
RNA-Seq ExpressionIVF0006897
SyntenyIVF0006897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAACCTCCAGAAGTCGAAGAAGCAGTAGGGCGTCATGATAGAGTTGCATCGTCTATCATGAACAAACCTCAAAATCCAAAGAAGCAGGGCGCCATGATAGAGTGGCATCGTTTATCATGAACAAACACTCAAAAGTAGAAGAAACAGCTGGACATTATGATAGAGTTGCATCGTCTATCATGAATAAGTCTTAAAAGCCAAAGAAGTAGGGTGTTATGATAGAGTTGCATTGTCTATCACGAACAAACCCAAGGAGCCAGAAATCAAAGAAAAGATGTCGATGAAATTATAA

mRNA sequence

ATGAACAAACCTCCAGAAGTCGAAGAAGCAGTAGGGCGTCATGATAGAGTTGCATCGTCTATCATGAACAAACCTCAAAATCCAAAGAAGCAGGGCGCCATGATAGAGTGGCATCAAGTAGGGTGTTATGATAGAGTTGCATTGTCTATCACGAACAAACCCAAGGAGCCAGAAATCAAAGAAAAGATGTCGATGAAATTATAA

Coding sequence (CDS)

ATGAACAAACCTCCAGAAGTCGAAGAAGCAGTAGGGCGTCATGATAGAGTTGCATCGTCTATCATGAACAAACCTCAAAATCCAAAGAAGCAGGGCGCCATGATAGAGTGGCATCAAGTAGGGTGTTATGATAGAGTTGCATTGTCTATCACGAACAAACCCAAGGAGCCAGAAATCAAAGAAAAGATGTCGATGAAATTATAA

Protein sequence

MNKPPEVEEAVGRHDRVASSIMNKPQNPKKQGAMIEWHQVGCYDRVALSITNKPKEPEIKEKMSMKL
Homology
BLAST of IVF0006897 vs. ExPASy TrEMBL
Match: A0A5D3DHY5 (Cell division protein (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002240 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 1   MNKPPEVEEAVGRHDRVASSIMNKPQNPKKQGAMIEWHQVGCYDRVALSITNKPK 56
           +NKP EV+E   RHDRVASSIMNKP   ++           C+DRVA SI NKP+
Sbjct: 54  INKPLEVKEGAQRHDRVASSIMNKPSKAEE--------ATECHDRVASSIINKPQ 100

BLAST of IVF0006897 vs. NCBI nr
Match: KAE8648416.1 (hypothetical protein Csa_009279, partial [Cucumis sativus])

HSP 1 Score: 48.9 bits (115), Expect = 3.20e-05
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 0

Query: 5  PEVEEAVGRHDRVASSIMNKPQNPKKQ-GAMIEWHQVGC-----------YDRVALSITN 56
          P    + GRHDRV SSIM+KP+  ++  GAMIE H + C           Y RVA SI  
Sbjct: 15 PRSRSSSGRHDRVGSSIMHKPKKVEEAVGAMIELHHLSCTNPRSHSSNRHYFRVASSIMY 74

BLAST of IVF0006897 vs. NCBI nr
Match: KAA0065418.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 3.09e-04
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 5   PEVEEAVGRHDRVASSIMNKPQNPKKQGAMIEWHQVGCYDRVALSITNK 53
           P+V++AVGRHDRVASSIMNK Q   K         +G +DRVA SI NK
Sbjct: 826 PDVDKAVGRHDRVASSIMNKSQTLIK---------LGRHDRVASSIMNK 865

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DHY51.3e-0452.73Cell division protein (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
KAE8648416.13.20e-0546.88hypothetical protein Csa_009279, partial [Cucumis sativus][more]
KAA0065418.13.09e-0457.14retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006897.1IVF0006897.1mRNA