IVF0006893 (gene) Melon (IVF77) v1

Overview


Name	IVF0006893
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr03: 18549560 .. 18549787 (-)
RNA-Seq Expression	IVF0006893
Synteny	IVF0006893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTGGCAAAAGTCAAAGACGTAGGGATGAGCAACTTAATATATTGGAAATTGTCGTCGAACATCACGTGGATGAACACATTAAGGATGACACTCTTTGCAAGACTGAAGTTAATCCTACAGTGGTTGAAAGTTTGGATGTGTGTCATGTCACTAACGACTTCATAGATGATGATGATGAACAATCATCATCACCTCAAAGCGAATCAAGTGACAATGAATAA

mRNA sequence

ATGGGATTTGGCAAAAGTCAAAGACGTAGGGATGAGCAACTTAATATATTGGAAATTGTCGTCGAACATCACGTGGATGAACACATTAAGGATGACACTCTTTGCAAGACTGAAGTTAATCCTACAGTGGTTGAAAGTTTGGATGTGTGTCATGTCACTAACGACTTCATAGATGATGATGATGAACAATCATCATCACCTCAAAGCGAATCAAGTGACAATGAATAA

Coding sequence (CDS)

ATGGGATTTGGCAAAAGTCAAAGACGTAGGGATGAGCAACTTAATATATTGGAAATTGTCGTCGAACATCACGTGGATGAACACATTAAGGATGACACTCTTTGCAAGACTGAAGTTAATCCTACAGTGGTTGAAAGTTTGGATGTGTGTCATGTCACTAACGACTTCATAGATGATGATGATGAACAATCATCATCACCTCAAAGCGAATCAAGTGACAATGAATAA

Protein sequence

MGFGKSQRRRDEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSSPQSESSDNE

Homology

[Close]

BLAST of IVF0006893 vs. ExPASy TrEMBL
Match: A0A5D3DTV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00320 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 5   KSQRRRDEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQS 64
           K +   +EQLN+LE VV H VDEHIKDDTLC+ +V+P VVE  DVCHVT +FIDDDDE+S
Sbjct: 60  KVEGLENEQLNVLETVVRHRVDEHIKDDTLCRAKVDPIVVERPDVCHVTVNFIDDDDERS 119

Query: 65  SSPQSES 72
           SS QS S
Sbjct: 120 SSLQSGS 126

[Close]

BLAST of IVF0006893 vs. ExPASy TrEMBL
Match: A0A5D3BBI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001360 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 7   QRRRDEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSS 66
           Q   +EQLN+L+IV+ H V+EHI+D TLC+ EV+PTVVE  DV HV ++FID+DDEQSSS
Sbjct: 88  QNVENEQLNVLKIVIRHRVNEHIEDGTLCRAEVDPTVVERPDVRHVDDEFIDNDDEQSSS 147

Query: 67  PQSESSDNE 76
           PQS SS++E
Sbjct: 148 PQSGSSNDE 156

[Close]

BLAST of IVF0006893 vs. ExPASy TrEMBL
Match: A0A5A7UN49 (Acidic leucine-rich nuclear phosphoprotein 32 family member A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001490 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.7e-13
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 5   KSQRRRD---------EQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTND 64
           +++RRRD         +QLNILEIVV H VDEHI+DDTLC+T+++PT+ E L VCH+TND
Sbjct: 101 QNKRRRDVPEVDDVGNKQLNILEIVVGHRVDEHIEDDTLCRTDIDPTIFERLIVCHITND 160

Query: 65  FIDDDDEQSSS 67
           FIDD DE+ S+
Sbjct: 161 FIDDGDEELSN 171

[Close]

BLAST of IVF0006893 vs. ExPASy TrEMBL
Match: A0A5A7UDY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00790 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 11  DEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSSPQSE 70
           +EQ N+LEI VEH VDEHI+DDTLC+ +V+PTVVE  DV HV  +FIDDDDEQ SSP   
Sbjct: 156 NEQFNVLEIDVEHRVDEHIEDDTLCRVKVDPTVVERPDVHHVAGNFIDDDDEQLSSPLGG 215

Query: 71  SSDNE 76
            SD+E
Sbjct: 216 LSDDE 220

[Close]

BLAST of IVF0006893 vs. ExPASy TrEMBL
Match: A0A5D3CJ90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00210 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 11  DEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSSP 68
           +EQ N+LEI VEH VDEHI+DDTLC+ EV+P VVE  DV HV  +FIDDDDEQ SSP
Sbjct: 156 NEQFNVLEIDVEHRVDEHIEDDTLCRVEVDPIVVERSDVHHVAGNFIDDDDEQLSSP 212

[Close]

BLAST of IVF0006893 vs. NCBI nr
Match: KAA0042170.1 (uncharacterized protein E6C27_scaffold67G006640 [Cucumis melo var. makuwa] >TYK26745.1 uncharacterized protein E5676_scaffold124G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.13e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 5   KSQRRRDEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQS 64
           K +   +EQLN+LE VV H VDEHIKDDTLC+ +V+P VVE  DVCHVT +FIDDDDE+S
Sbjct: 60  KVEGLENEQLNVLETVVRHRVDEHIKDDTLCRAKVDPIVVERPDVCHVTVNFIDDDDERS 119

Query: 65  SSPQS 69
           SS QS
Sbjct: 120 SSLQS 124

[Close]

BLAST of IVF0006893 vs. NCBI nr
Match: KAA0036777.1 (hypothetical protein E6C27_scaffold20G00630 [Cucumis melo var. makuwa] >TYJ95845.1 hypothetical protein E5676_scaffold110G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.89e-17
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 7   QRRRDEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSS 66
           Q   +EQLN+L+IV+ H V+EHI+D TLC+ EV+PTVVE  DV HV ++FID+DDEQSSS
Sbjct: 88  QNVENEQLNVLKIVIRHRVNEHIEDGTLCRAEVDPTVVERPDVRHVDDEFIDNDDEQSSS 147

Query: 67  PQSESSDNE 75
           PQS SS++E
Sbjct: 148 PQSGSSNDE 156

[Close]

BLAST of IVF0006893 vs. NCBI nr
Match: KAA0056490.1 (acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo var. makuwa] >TYK29033.1 acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 2.80e-17
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 5   KSQRRRD---------EQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTND 63
           +++RRRD         +QLNILEIVV H VDEHI+DDTLC+T+++PT+ E L VCH+TND
Sbjct: 101 QNKRRRDVPEVDDVGNKQLNILEIVVGHRVDEHIEDDTLCRTDIDPTIFERLIVCHITND 160

[Close]

BLAST of IVF0006893 vs. NCBI nr
Match: KAA0057443.1 (uncharacterized protein E6C27_scaffold280G003210 [Cucumis melo var. makuwa] >TYK30142.1 uncharacterized protein E5676_scaffold216G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.85e-16
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 11 DEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDEQSSSPQSE 70
          +EQLN+LEI+V+H VDEHI+DDT+C+ +V+PT+VE   +CH+ N+FI D DEQ S  QS 
Sbjct: 9  NEQLNVLEIIVDHQVDEHIEDDTICRLDVDPTIVERSIICHIANNFIHDGDEQLSH-QSR 68

Query: 71 SSDNE 75
          SSD+E
Sbjct: 69 SSDDE 72

[Close]

BLAST of IVF0006893 vs. NCBI nr
Match: TYK05686.1 (uncharacterized protein E5676_scaffold98G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.30e-15
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 11 DEQLNILEIVVEHHVDEHIKDDTLCKTEVNPTVVESLDVCHVTNDFIDDDDE 62
          +E +N++EI+V H VD++I+DDTLC+T+V+PT++E L VCHVTNDFIDD DE
Sbjct: 27 NEHINVVEIIVSHRVDDYIEDDTLCRTDVDPTIIERLVVCHVTNDFIDDVDE 78

The following BLAST results are available for this feature:

BLAST of IVF0006893 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTV5	1.3e-13	67.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BBI5	5.1e-13	63.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UN49	6.7e-13	59.15	Acidic leucine-rich nuclear phosphoprotein 32 family member A-like OS=Cucumis me...	[more]
A0A5A7UDY8	4.3e-12	66.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CJ90	5.7e-12	70.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0006893 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042170.1	1.13e-17	67.69	uncharacterized protein E6C27_scaffold67G006640 [Cucumis melo var. makuwa] >TYK2...	[more]
KAA0036777.1	1.89e-17	63.77	hypothetical protein E6C27_scaffold20G00630 [Cucumis melo var. makuwa] >TYJ95845...	[more]
KAA0056490.1	2.80e-17	60.29	acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo...	[more]
KAA0057443.1	5.85e-16	60.00	uncharacterized protein E6C27_scaffold280G003210 [Cucumis melo var. makuwa] >TYK...	[more]
TYK05686.1	1.30e-15	63.46	uncharacterized protein E5676_scaffold98G001620 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006893 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006893.1	IVF0006893.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity