IVF0006879 (gene) Melon (IVF77) v1

Overview


Name	IVF0006879
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
Location	tig00000662: 102332 .. 102694 (+)
RNA-Seq Expression	IVF0006879
Synteny	IVF0006879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTGCTTTACGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTCTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCGTGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

mRNA sequence

ATGTTTCTGCTTTACGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTCTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCGTGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

Coding sequence (CDS)

ATGTTTCTGCTTTACGAATATGATATTTTCTGGGTATTTCTAATAATATCAAGTCTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCGTGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCTTAG

Protein sequence

MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS

Homology

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BLAST of IVF0006879 vs. ExPASy Swiss-Prot
Match: Q4VZH0 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-58
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISS+IPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. ExPASy Swiss-Prot
Match: P52765 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lupinus luteus OX=3873 GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-56
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFW FLIISSLIPILAFLISG+LAP+SK PEKLSSYESGIEPMGDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

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BLAST of IVF0006879 vs. ExPASy Swiss-Prot
Match: Q49KZ3 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhC PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.8e-56
Identity = 113/120 (94.17%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFW FLIISS+IPILAF ISG+LAP+SK PEKLSSYESGIEPMGDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLIISSVIPILAFXISGILAPISKGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

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BLAST of IVF0006879 vs. ExPASy Swiss-Prot
Match: Q68S01 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Panax ginseng OX=4054 GN=ndhC PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.8e-56
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFW FLIISSLIPILAF ISGVLAP+SK PEKLSSYESGIEPMG+AW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLIISSLIPILAFFISGVLAPISKGPEKLSSYESGIEPMGNAWLQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. ExPASy Swiss-Prot
Match: Q9M3L9 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=ndhC PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.8e-56
Identity = 112/120 (93.33%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFW FLIISS+IPILAFL SG+LAP+SK PEKLSSYESGIEPMGDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLIISSVIPILAFLFSGILAPISKGPEKLSSYESGIEPMGDAWLQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFD+LGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

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BLAST of IVF0006879 vs. ExPASy TrEMBL
Match: A0A249RZI2 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

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BLAST of IVF0006879 vs. ExPASy TrEMBL
Match: A0A1S4EU16 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo OX=3656 GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

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BLAST of IVF0006879 vs. ExPASy TrEMBL
Match: A0A249RXR7 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. ExPASy TrEMBL
Match: A0A286NG05 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. ExPASy TrEMBL
Match: A0A249RZ15 (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. NCBI nr
Match: YP_004841788.1 (NADH-plastoquinone oxidoreductase subunit 3 [Cucumis melo subsp. melo] >YP_009860078.1 NADH-plastoquinone oxidoreductase subunit 3 [Cucumis melo subsp. agrestis] >ASY96611.1 NADH dehydrogenase subunit 3 [Cucumis melo var. conomon] >ASY96698.1 NADH dehydrogenase subunit 3 [Cucumis melo var. makuwa] >ASY96785.1 NADH dehydrogenase subunit 3 [Cucumis melo var. momordica] >ASY96872.1 NADH dehydrogenase subunit 3 [Cucumis melo var. dudaim] >ASY96959.1 NADH dehydrogenase subunit 3 [Cucumis melo var. cantalupo] >ASY97133.1 NADH dehydrogenase subunit 3 [Cucumis melo var. inodorus] >ASY97307.1 NADH dehydrogenase subunit 3 [Cucumis melo var. flexuosus] >QJF46388.1 NADH dehydrogenase subunit 3 [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 1.53e-73
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. NCBI nr
Match: YP_009004049.1 (NADH-plastoquinone oxidoreductase subunit 3 [Cucumis hystrix] >YP_009317391.1 NADH dehydrogenase subunit 3 [Coccinia grandis] >YP_009325994.1 NADH dehydrogenase subunit 3 [Citrullus lanatus] >YP_009346489.1 NADH-plastoquinone oxidoreductase subunit 3 [Cucumis x hytivus] >YP_009348036.1 NADH dehydrogenase subunit 3 [Citrullus mucosospermus] >YP_009420799.1 NADH dehydrogenase subunit 3 [Citrullus colocynthis] >YP_009431562.1 NADH dehydrogenase subunit 3 [Citrullus amarus] >YP_009431647.1 NADH dehydrogenase subunit 3 [Citrullus rehmii] >YP_009456066.1 NADH dehydrogenase subunit 3 [Momordica charantia] >YP_009456151.1 NADH dehydrogenase subunit 3 [Lagenaria siceraria] >YP_009751911.1 NADH dehydrogenase subunit C [Cyclanthera pedata] >YP_009751995.1 NADH dehydrogenase subunit C [Cionosicys macranthus] >YP_009752080.1 NADH dehydrogenase subunit C [Dendrosicyos socotranus] >YP_009752248.1 NADH dehydrogenase subunit C [Trichosanthes baviensis] >YP_009752332.1 NADH dehydrogenase subunit C [Bryonia marmorata] >YP_009752417.1 NADH dehydrogenase subunit C [Trichosanthes tricuspidata] >YP_009752501.1 NADH dehydrogenase subunit C [Trichosanthes tubiflora] >YP_009752586.1 NADH dehydrogenase subunit C [Trichosanthes homophylla] >YP_009753094.1 NADH dehydrogenase subunit C [Corallocarpus boehmii] >YP_009753179.1 NADH dehydrogenase subunit C [Trichosanthes truncata] >YP_009753263.1 NADH dehydrogenase subunit C [Nothoalsomitra suberosa] >YP_009753625.1 NADH dehydrogenase subunit C [Trichosanthes wallichiana] >YP_009753710.1 NADH dehydrogenase subunit C [Trichosanthes nervifolia] >YP_009753794.1 NADH dehydrogenase subunit C [Trichosanthes pilosa] >YP_009753879.1 NADH dehydrogenase subunit C [Trichosanthes lobata] >YP_009945422.1 NADH-plastoquinone oxidoreductase subunit 3 [Sechium edule] >YP_247604.1 NADH dehydrogenase subunit 3 [Cucumis sativus] >Q4VZH0.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 3; AltName: Full=NADH-plastoquinone oxidoreductase subunit 3 [Cucumis sativus] >ALF03306.1 NADH dehydrogenase subunit 3 [Cucumis sativus var. hardwickii] >APW82466.1 NADH dehydrogenase subunit 3 [Citrullus lanatus subsp. vulgaris] >AVE15336.1 NdhC [Cucumis sativus var. sativus] >QIT04055.1 NADH dehydrogenase subunit C [Luffa aegyptiaca] >QIT05067.1 NADH dehydrogenase subunit C [Trichosanthes kirilowii] >QJD26476.1 NdhC [Trichosanthes kirilowii var. japonica] >QJD26650.1 NdhC [Trichosanthes rosthornii] >QKX48478.1 NADH-plastoquinone oxidoreductase subunit 3 [Luffa acutangula] >QNM38536.1 NADH-plastoquinone oxidoreductase subunit 3 [Lagenaria siceraria var. microcarpa] >QZL38598.1 NADH dehydrogenase subunit C [Citrullus naudinianus] >QZL38686.1 NADH dehydrogenase subunit C [Citrullus ecirrhosus])

HSP 1 Score: 223 bits (568), Expect = 4.39e-73
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISS+IPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. NCBI nr
Match: YP_009751658.1 (NADH dehydrogenase subunit C [Hodgsonia heteroclita] >QIT04391.1 NADH dehydrogenase subunit C [Hodgsonia heteroclita])

HSP 1 Score: 223 bits (567), Expect = 6.24e-73
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISS+IPILAFLISG+LAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSVIPILAFLISGILAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. NCBI nr
Match: YP_010131099.1 (NADH-plastoquinone oxidoreductase subunit 3 [Benincasa hispida] >QPZ75746.1 NADH-plastoquinone oxidoreductase subunit 3 [Benincasa hispida] >QSQ72315.1 NADH dehydrogenase subunit C [Benincasa hispida])

HSP 1 Score: 222 bits (566), Expect = 8.87e-73
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISS+IPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEA+IFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAIIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. NCBI nr
Match: QHB75968.1 (NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo])

HSP 1 Score: 222 bits (566), Expect = 8.87e-73
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFWVFLIISS+IPILAF+ISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI
Sbjct: 1   MFLLYEYDIFWVFLIISSVIPILAFIISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MFLLYEYDIFWVFLIISSLIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 60
           MFLLYEYDIFW FL+ISS IP+LAFLISGVL+P+ K PEKLSSYESGIEP+GDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRI 60

Query: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVS FIEA IFVLILI+GLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120

[Close]

BLAST of IVF0006879 vs. TAIR 10
Match: AT2G07751.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13
Identity = 40/109 (36.70%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 12  VFLIISSLIPILAFLISGVLAPL----SKEPEKLSSYESGIEPMGDAWVQFRIRYYMFAL 71
           ++L+IS L+   + ++ GV  P     S  PEKLS+YE G +P GDA  +F IR+Y+ ++
Sbjct: 9   IYLVISLLV---SLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSI 68

Query: 72  VFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGA 117
           +F++ D+E  F +PWA+  + + +  F   + F+ IL +G +Y W++GA
Sbjct: 69  LFLIPDLEVTFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGA 114

[Close]

BLAST of IVF0006879 vs. TAIR 10
Match: ATMG00990.1 (NADH dehydrogenase 3 )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 41/118 (34.75%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 3   LLYEYDIFWVFLIISSLIPILAFLISGVLAPL----SKEPEKLSSYESGIEPMGDAWVQF 62
           ++ E+    ++L+IS L+   + ++ GV  P     S  PEKLS+YE G +P GDA  +F
Sbjct: 1   MMSEFAPISIYLVISLLV---SLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRF 60

Query: 63  RIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGA 117
            IR+Y+ +++F++ D+E  F +PWA+  + + +  F   + F+ IL +G +Y W++GA
Sbjct: 61  DIRFYLVSILFLIPDLEVTFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGA 115

The following BLAST results are available for this feature:

BLAST of IVF0006879 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH0	2.8e-58	99.17	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus OX=36...	[more]
P52765	1.2e-56	95.83	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lupinus luteus OX=387...	[more]
Q49KZ3	9.8e-56	94.17	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Eucalyptus globulus s...	[more]
Q68S01	9.8e-56	95.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Panax ginseng OX=4054...	[more]
Q9M3L9	9.8e-56	93.33	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Spinacia oleracea OX=...	[more]

BLAST of IVF0006879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RZI2	4.6e-56	100.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. can...	[more]
A0A1S4EU16	4.6e-56	100.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A249RXR7	4.6e-56	100.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo subsp. a...	[more]
A0A286NG05	4.6e-56	100.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. fle...	[more]
A0A249RZ15	4.6e-56	100.00	NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis melo var. dud...	[more]

BLAST of IVF0006879 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841788.1	1.53e-73	100.00	NADH-plastoquinone oxidoreductase subunit 3 [Cucumis melo subsp. melo] >YP_00986...	[more]
YP_009004049.1	4.39e-73	99.17	NADH-plastoquinone oxidoreductase subunit 3 [Cucumis hystrix] >YP_009317391.1 NA...	[more]
YP_009751658.1	6.24e-73	98.33	NADH dehydrogenase subunit C [Hodgsonia heteroclita] >QIT04391.1 NADH dehydrogen...	[more]
YP_010131099.1	8.87e-73	98.33	NADH-plastoquinone oxidoreductase subunit 3 [Benincasa hispida] >QPZ75746.1 NADH...	[more]
QHB75968.1	8.87e-73	98.33	NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo]	[more]

BLAST of IVF0006879 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00440.1	2.5e-54	89.17	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]
AT2G07751.1	3.6e-13	36.70	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein	[more]
ATMG00990.1	1.1e-12	34.75	NADH dehydrogenase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PFAM	PF00507	Oxidored_q4	coord: 23..119 e-value: 1.7E-36 score: 124.3
IPR000440	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	PANTHER	PTHR11058	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3	coord: 1..120
IPR038430	NADH:ubiquinone oxidoreductase, subunit 3 superfamily	GENE3D	1.20.58.1610	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	coord: 1..120 e-value: 2.7E-44 score: 152.1
None	No IPR available	PANTHER	PTHR11058:SF12	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 3, CHLOROPLASTIC	coord: 1..120
IPR023043	NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid	HAMAP	MF_01394	NDH1_NuoA	coord: 3..120 score: 19.951084

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006879.2	IVF0006879.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H