IVF0006856 (gene) Melon (IVF77) v1

Overview


Name	IVF0006856
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 23006456 .. 23006963 (-)
RNA-Seq Expression	IVF0006856
Synteny	IVF0006856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTGTTCCAAAGGTTTACTACCAGTCTATATATACTTCTTGCTTCTAACATCTTTCCATGATGTTGAATATGTACAACAGGATTGACGAGAAGCCTGGTGATTGTAGGAGCAGCAATGTTGGTACAATTTTACTTGATCTATGTCCTATCTTCCTTGCGCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGACAAACCAACTGAAACTTCAGAACCTGCATTGCACCTTAACATAAAGTATTATTCTCCCTGATGTCAAACTTACATAGGAATTCAATCAAAATTTTCTCTCATACAGATGGCCATAAATCATGTTGGTATCAATATGAACTTTCCAAAGAATTCTTCTGCTTTCAGCTTTAATATCTCTACTTGAGCGTATAGTGCTCCATCCATCATAATATGTGTCTATTGCCTCTTATATTTGCCTCATCTTCATGGTTATCTTCTCATACTGATACACTGATATCACTAATATCTACCAAAGTTCTTTCACCG

mRNA sequence

ATGAGTTTGTTCCAAAGGTTTACTACCAGTCTATATATACTTCTTAAGCCTGGTGATTGTAGGAGCAGCAATGTTGGTACAATTTTACTTGATCTATGTCCTATCTTCCTTGCGCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGACAAACCAACTGAAACTTCAGAACCTGCATTGCACCTTAACATAAAGTATTATTCTCCCTGATGTCAAACTTACATAGGAATTCAATCAAAATTTTCTCTCATACAGATGGCCATAAATCATGTTGGTATCAATATGAACTTTCCAAAGAATTCTTCTGCTTTCAGCTTTAATATCTCTACTTGAGCGTATAGTGCTCCATCCATCATAATATGTGTCTATTGCCTCTTATATTTGCCTCATCTTCATGGTTATCTTCTCATACTGATACACTGATATCACTAATATCTACCAAAGTTCTTTCACCG

Coding sequence (CDS)

ATGAGTTTGTTCCAAAGGTTTACTACCAGTCTATATATACTTCTTAAGCCTGGTGATTGTAGGAGCAGCAATGTTGGTACAATTTTACTTGATCTATGTCCTATCTTCCTTGCGCTGCCAAAAAGCAATGCTATCAACCATGGTTTCTTGGACAAACCAACTGAAACTTCAGAACCTGCATTGCACCTTAACATAAAGTATTATTCTCCCTGA

Protein sequence

MSLFQRFTTSLYILLKPGDCRSSNVGTILLDLCPIFLALPKSNAINHGFLDKPTETSEPALHLNIKYYSP

Homology

[Close]

BLAST of IVF0006856 vs. ExPASy TrEMBL
Match: A0A0A0LWM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050350 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MSLFQRFTTSLYILL----------------KPGD-CRSSNVGTILLDLCPIFLALPKSN 60
          MSLFQR++TS Y L                 KPG+   ++ + TILLDLC IFLALPKS+
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLDKPTETSEPALHLNIKYYSP 71
          AINHGFL+KP ETSEPALHL +KYYSP
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSP 87

[Close]

BLAST of IVF0006856 vs. NCBI nr
Match: KGN64396.1 (hypothetical protein Csa_013371 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.99e-23
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MSLFQRFTTSLYILL----------------KPGDC-RSSNVGTILLDLCPIFLALPKSN 60
          MSLFQR++TS Y L                 KPG+   ++ + TILLDLC IFLALPKS+
Sbjct: 1  MSLFQRYSTSNYFLFLTSFHDVEYVQHGIDEKPGESVEAAMLVTILLDLCRIFLALPKSD 60

Query: 61 AINHGFLDKPTETSEPALHLNIKYYSP 70
          AINHGFL+KP ETSEPALHL +KYYSP
Sbjct: 61 AINHGFLEKPIETSEPALHLTVKYYSP 87

The following BLAST results are available for this feature:

BLAST of IVF0006856 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWM1	1.2e-16	58.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050350 PE=4 SV=1	[more]

BLAST of IVF0006856 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64396.1	1.99e-23	58.62	hypothetical protein Csa_013371 [Cucumis sativus]	[more]

BLAST of IVF0006856 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006856.1	IVF0006856.1	mRNA