IVF0006783 (gene) Melon (IVF77) v1

Overview
NameIVF0006783
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein TIC 40, chloroplastic
Locationchr10: 17120628 .. 17130729 (-)
RNA-Seq ExpressionIVF0006783
SyntenyIVF0006783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGAAGCCTACGATGGGACGATCGCCTCATGGACTCTTTAAAGAACTTTGATTTTAGTAGCCCTAAAGTTAAGCAGCAATTTGGTCAGTCAAGTTGATCTCTTTTGATTTTGTATTTGTTAATGGTTGTTTTGTGGGTATTAAAATGGCTTGAGTACTATTTTGTTGGCATTTGTTATGACGTCAAATATTTCATCTATAGTATTTGTGATTTTCTGTTATTGTTGCATTGCAATCATATATGCTTCGACTCTTAAATAATCTGACCAACATTTGGTTGTTTTTGGGTCAATAATTGACGAGCTCGGAAGTTTTTGTTTAATTTTTATTCAGTTTTGTTTTCTGATGCTATTTGTTTAAAATCACGATTCATAAGTCTTAGTATTAATAATTTCATTTGATATTGTTCACATGAGATTTTCGAAAAAATTTGGTTCGTGGAGTTAAACTTGTGTTGATATTGTATTTCTGTTGATTCGATGCGATGTGGTTCGATCTCTAGAATTTGATCCTCTGATTCTCTCTTGGCTGGATGCTTACGCTTGATTTGAGGAAGCGAAACACGTAATGTTCTTGGAGTTGGAGTCTTCGAAGAAAGCTTGGATCTTCAAAGGAGCTTCAAACTTTGAGAGTGTTCTTGAAGTTGAAGTCTTTGAAGAAAGCTTGGATCTTCAAAGGAGCTTCGATCTTTGAGGGTGTTCTTAAAGTTGGAGTCTTCGAAGAAAGCTTGGATCTTCAAACGAGCTTCAAACTTTGAGGGTGTTCTTGAAGTTGGAGTCTTCGAAGAAAGCTTGGATCTTCAAAGGAGCTTCGATCTTTGAGGGTGTTCTTAAAGTTGGAGTCTTCGAAGAAAGCTTGGATCTTCAAAGGAGCTTCAAACTTTGAGGGTGTTCTTGAAGTTGGAGTCTTCGAAGAAAACTTGGATCTTCAAAGGAGCTTCAATCTTTGAGGGAGTTCTTAAAGTTAGAGTCTTCGAAAAAGCTTGGATCTTCAAAGGAGTTTCAATCTTTGAGGGTGTTCTTAAAGTTGGAGTCTTCAAAGAAGAGAAGCTTCAATCTTCGAGGGTGGTCGACTTCAAGAGTTGAGGAGGCTTCTATTGAGAATTTTCTCTAGACCTTCTCGAGTCAAAAATTTCCAACCCCCACAAATGAAGACAACTTCTATTTATAGAGTTCCCTTGTGGGCTTTTATGGACTTTAGCCTGTTCTGGTCCATGGACCATACACATGGGCTTAATCACACATGAATTTGTCCAATTTGTCTTTAAATTTAATTTGGGACACATGCCAATTTTTAGTTAATCCCAAGTATAATTATTTTAGTAAATGATGTGGCAATTTGTGATTGGTTCCAAAATTTCTTATTCAACAAATGCCCCCTTTCGAGATTTATGCACGTGTATGAGTGGGTCAATCTCGAAAAGATAAATTTAAAGTCCAAATATGAGCATTTTTTTTTGCTCAATTTGACACATCCAATTAATCAAACTATGAATTTAGTACATGAGTTTGATTTAAATTTGAAATAATAGTTGGGATATGGTCAATCTTTAATTTAGAAAAATTTAAGGTTTTATCCAGAATTTACTTTAATTTGAGGATAAAAATTTAAGTTTGATGATGGTTTGATTTGATTTTAATAATTTGGAATGACCAATTTTAACATAAGATAATTGAATTTTAATTTCATTTTAAAAATTAAAATATTAAAATATGTTTGAATATTTTAAAAGTGGAATCCGAGATTTTACTCCAAAATAAAAATATCATAAGATAATTGGATTTTAATTTTATTTATTATTAAAAAGAAAATTAAAACCTTTCCAAATCCTATAAGAAATTGGATTTTAATTTTATTTATTATTAAAAAGAAAATTAAAACCTTTCCAAATCCTATTAGGAATTGGATTTTAATTTTATTTATTATTAAAAAGGAAATTAAAACCTTTCCAAATCCTATTAGGAATTGGACTTGTTAGCCTTATAAATAGACTCATACCATGATCATTCTTTTCTCATCAAGGAGAACAAAGATATGAAATAAAAAAAGAAAAGATTTCTCTTCTCCCTTTTTGTTTTTTTTTTTTTGTTTTTCTTTTTATTTTCTTAATAATAGTATTTTTTTGAACTCCATCTTTTTTTTAGGAACTAGAGTTATTGTCAAAAGGTAAGGATTTATTTTTTTATTGTTGTTTTTTTTTTGTTTTTTTAAATCATTTGTAGAAGTAACTCCGCCGTTAGCGATCCAACTTCTACTAGGGGACGATCGGGCTTTTGCCGTTAGATCCACCCCCTGGTAGGAGCGATCGAGCACCATCGTCATTTGTAGAGGTGATACTGCCGTCAACGATCCAACTTCTATCGGGGGACGATCGGACTTTTGCCGTCAGATCCACCCTTTGATAGGAGCGATTGGGCACCTTCGTCCTTTGGAGGGGTGATATTGCTGTCAGCGATCCAACTTCTATCGGAGGACGACCGAGATTTTGCCGTCAGATCCACACCCTGGTAGGAGCGATCGGGCACCATCGTCATTTGGAGAGGTGATACTACCGTCAGCGATCCAACTTCTATCGAGGGACGGTCGGGCTTTTGCAGTCAGATCCACCCCCTGGTAGGAGCGATCGGGCACCATCGTCATTTGGAAAGGTGATACTGTCGTCAGCAATCCTACTTCTATCGGGAGACGATCGAGTTTTTGTTGTCAGATCCACCTCTGGTAGGAGCGATCAGACACCTTCGTCATTTGGAGAGATGGTATTGCCGTCAGCGATCCAACTTTTATCGGGGGATGATTGGGCTTTTGCTGTCAGATCCACCCCTGGTCGGAGCGATCGGACACCTTCATCCTTTGGAGGGGTAATATTGCCGTCAGCGATCCAACTTCTATCGGGAGATGATCGGGCTTTTGCCGTCAGATCCACCCCTGGTAGAAGCGATCGGGCACCTTTGTTGTTTGGAGAGGTGGTACTGCCGTCAGCGATCCAACTTCTATCAGGGGATGATCGGGATTTTGCCGTCAGATCCACCCCCTGGTAGGAGCGATCGGGCACCTTCGTCATTTGGAGAGGTGGTACTGCCGTTAGCGATCCAATTTCTACTGGGGGACCATCGAGCTTTTATCGTCAGATCCACCGCTCTGGTAGGAGCGATCGGGCACCATCGTCATTTGAAGAGCTGATACTGCCGTCAGTGATCCAACTTCTATCGGGGGACGATCCAGCTTTTGCCGTCAAATCTACCGCCTTGGTAGGAGCGATCGGGAATTATCGTCGTTTAGAGAGGTGGAGGTAAAATTGTACCATCGACGTCTTCTTGGAGAAGCAAAGGTAGAGCTGCACCGTTGTCGTCCTCTCAAGGCTACAACATATTAGAAATGAGGTAAAGTTTTTTTTTATTTTAATTTTATTTATTATTTTTATTATTATTTTTTTTTTTGTGTTGACATTTCTTTTAGAGGAGGCAAAGCCACCTCTACACCAATGAAACCTAAGGTCTTCAAACTTGCTTGAAAAGGCAATGATGAAGTCTTTATTTTATTTTATTTTATTTATTTATTTATTTTTTGCTTGAAGAAAACAGTACTTTTAAATTTAAATTGAAGAAGAATCCTTTGAGCTTGAATATGAGGATACATCGATGAAACCTTCGATCTTGTACATGGAGAAAAACAACAACAGTGCAATCCTTAAAGTCGGTGGAGCACTGGTGAAGTCTTCAGTCTTGCATTTGAATGATTCTTTATGAAATTGTTTGAACTCGAATTTGAAGAAATATCAACAAAGCCTCAAAATTTGATGTTGAGGAACTTCTAATCTTCTGTGAACTTAAATTTTAAGAAACATTAACAAATCCCCCAAATTTGATTTTGAGGAACTTCTAAACTTGGCGATGGAGTGCTGAACTTCAAAAGAATGATGCCACCTTATAAGTATCAACATCTTGCTCCTAGTGCCACACCTTTTTTTTTTTAATTTTGTTATATTGCCCCCAGTAAGGCATCTTCAACTTTAAGTTGATATTCTTTGATGAGAACGAAAACTATCAATTGCTAATGCCATGCTTTATGTGATCATGAACTACTCTTGCTTTCCATTCTTCTCAACTGAGTTCTTTTTTTTTTTTTACTAGACTGAACTTAAAGTTTCCCTTAAGCTGCCTACGTACCCTTTATAATACAGAGATCAAGTTATAACGTAGTTCAAATATTTTTTTTGCTGGACTAAACTTAAGGTTTCTCTTAAGTTGCCTACGTACCATTTATAATATAGAGATCAAGTCATAACGTAGTTCAATTGTTTTTTTTTATTGGACTGAACTTAAAGTTTCCTTTAAGCTGCCTATGTACCATTTATAATATAGGGATCAAGTCATAACGTAGTTAAATTTTTTTATTATACCATTCACCTTTTAAGCTCTTGTGGGCTATGAGCACCATGCAGTTTAGGCTCTTGCGATAAGGAGATTTGCATATTTAGCAACTTTTATTTTCATCAAGAATTTTTTCATCTCCTTCGTTTATGGGATTGGTGAAGATAATGAATCTTGGTTTCACGGTCAAGGAACCTTCTATATTTATGTCAACAGACAATTTGCGTGATGGGATATGACTGTGAATCTTATCATCATCATTTTCTTCATGAAATGGTTTTGCCTTCAAAGATTTCATCTCTCTTTGTTGTTGATCGTTTTTCATCTTTAGACGATCAAAAGCAGATGTTGAAGGTCGATGTTTCTTCGATGTGGAGATGCTTAGCCTTTTGAAAGCTGAAGTTCGAGTGTAATTAGACGTTGGACATTGGTTTTCTTCTTCTTTCGTAGCCATACTCAATCTTTGAAAGACTAAAGATCGAGTAGTTAAAGGCTTGATACGATCAAAGACAGAAGTCCTTTGCTTAATTTCATTTGAATTGTCTACTTCTTCATAAGAATCATAATTGTTGTCGACTTCTACTATGCTGGTAGTATGACATGCAGTGACTTCTATTACTTCTTCTGGATGATCCTCAAAGAAACTTCTTGGGAGGAATTCTGCCAAAGTTATCGACCGTCGAGGTTGGAGGAAGTCCTCATCTTTTCCTTTGATGGGCTTAGGCTTCCACATCTTCTTGTTCCTTCTTCTCTTCTTTTTATGGGAGATGTTTCCTTTTGAATGCTTTTGATGGAAGTGTGACTTCGTTTGAACGAAACTTGTTTGTCTCTCTTTTTTATGAGCCACGACTATCCATTCTTCGCCTTCATCCTCAATAGGCTCTTTTTTGTTTCGAGAGTTCGACGTCATGATCTTTTATTGGAATCGAACAAGTATAGGTTCGAAAGTCCTAAATTGAATCAAACTTTCCCTTTGATTATAAAGCAGTATTGATGACGGAACACTTAAAGTCATATTGACTGCAACATGATTTGTTTGAGCTACTTCATCAATATCCAACTGAATCTTATTTTCACGAGCCAACTTTAGAATTAGCTCCTTCAACACGAAGCACTTTTCAACAGGGTGACTAATGACCCGATGATACTTACAGTAGTTAGGATCATCTACTTTTCCTGCTTGTCCTGGTCGTTTACATCCTAACAACTGAATAAGTTGTTTCTCTATTAATTGCTCCAACATGTCTGTAACATCAGAGTCAGGAAAGGGATAAACTTTTTTCTGTCTTTCTCTAAGAGTTGGGCGTCGTTTTTCATCGTCATCGTGATTTCTTTCATGTTTTGTTTCTTTTCTTTTAGAGAAAGATTTCAATGGAGTCTCTTGAACAACCATAGACTCGTTTAGGACACTATTTGCAATCTTTTTAGTGTCATTGATTTCATTGTTGTCACTCCTCGTTCTTTGAACCAAGAAATGTTTTGCTCCTCTGTTGGCTATACTCAACTCCATATCATGGGCGCGAGTTGCCAATTCTTCAAATGTGCGAGGTTTTATTCCCTGTAAAATATAGAGAAGTTCCCAGTGCATACCTTGGGTGCACATCTCTACTGCAGACAGTTCTGTGAGCTTGTCTTTGCAATCCAGGCTTAGAGCTCTCCATCGGTTTATATAGTTGATGACTGGCTCTCCATTCCACTGTTTTGTATTTGTTAACTCCATCATGCTGACGACACGCCTAGTTCTATAAAAGCGGTTGAGAAACTCTATTTCTAGCTGCTCCTAGCTATCAATTACTTCTGGCTCTAGATCAGTATACCACTCGAAAACATTTCCTTTTAAGCTTCGAACGAACTGCCTGACTAGTTGGTCTCTTCTTGATCCTGCATTTTTGCATGTTTCGACAAAGTGAGCGATATGCTGCTTTGGGTTGCCCTTTCCATCGAATTGCTGGAATTTTGGAGGTTGGTACCCAAGTGGCATTCTCAAGTTGTCGATTCTCTTGGTGTACGACTTAGAGTACATGAAAGAAGTTTGCGGCGGTCCTCCATACTGAGCTCTATTGGAATTCGTGATCATATTTTGTAGCTGCTGAACTGAGAGAGAAGCAACAGAAACTGATTGTTGTTGTGGTTGGTTTTCTTGCACCACATTCTTCCCTTTATCAGTAGCTTTGACAACAGAAGTTTGACTTGACTCAACAGTTTCACGAGTCTGCATCTGCTCCCTCAAAGCTGTGATTTCATGGTCTCGTTCCTCCACAACTTTCATCAAGAAGTTAATTTTTCTCTCCATCTCTGCCATGACAGCTTCAGCCGTTATATCAGTCATCATGACAGACATCACGTCAGGATGTTCTTTCTTCTTTGACTTGCTAGAGGCAGAATCAGAATTATCATACAAAGAATTTTCCTTGATGACAATCACAGCTTTAGGCGACTCCATCAATTGCTTAAGAATGCTCTGAGGGACGTCAGAACCTTGATCCTGCTCTTGAGTGATTCCCTTAGAACGATTGCGGGTGATGGGTCCCGTGTAACCGTCGCTTGCAACCGAAGATCTGGATGCAGCCTTCTTTGATGCCATTGATTTTCTTGTAGATTTGGATGACAAGAGAGAGATGAGAGGTAGAGAGGTCCCACTGGGTGTGCCAATTTGTTCACACGACATTTGCGGAGAAATTTTGTTCGCGGAGTTAAACTTGTGTTGATATTGTATTTATGTTGATTCGATGCGATGTGGTTCGATCTCTAGAATTTGATTCTCTGATTCTCTCTTGGCTGGATGCTTACGCTTGATTTGAGGAAGCGAAGCACGTGATGTTCTTGGAGTTGGAGCCTTCGAAGAAAGCTTGGATCTTCAAAGGAGCTTCAATCTTTGAGGGTGTTCTTAAAGTTGGAGTCTTCGAAGAAAGCTTGGATCTTCAAAAGAGTTTCAATCTTTGAGGGTATTCTTAAAGTTGGAGTCTTAAAGAAAGCTTGTATCTTCGAAGAAGCTTCAATCTTCGAGGGTGGTCGACTTTAGGAGTTGAGTAGGCTTCTATTTCTTGGGAGAATTCTCTCTAGACCTTCTAGAGTCAAAAATTTCCAACCCCCACAAATGAAGACAACTCCTCTATTTATAGAGTTCCCTGGTAGGCTTTTATGGACTTTAGCCTGTTCTGGTCCATGGACCATACCCATGGGCTCAATCACATGGATTTGTGTCATATTTTATTTTAGGCTAAATTAAGCTTATTTTTTGGCTCAATTGAATTTTATCCTAACTAAATAATATTTAATTGAACGAAAATAATTAATTTGACCCAATTGTCATAATAAAGATACGTGACATCGTTAGAATTGTCCAATTTGTCTTTAAATTTAATTTGGGACACATGCCAATTTTTAGTTAATCCCAAGTATAATTATTTTAGTAAATGATGTGGCAATTTGTGATTGGTTCCAAAATTTCTTATTTAACAGATATATCAATGTGTCCATGAGTTGGTACTTTTTAGAAATGAGATTTTAAAGCAATTTTTATGTAATTAGGAATAAAAATTGTTTTCCCCCATGTTTTGTGTGATGTTTTCTCAATTAATTATTCATTTATATTAATATTAAAAATAATTTAGGCTTGCTCTTTATTTTTGTACCTTGAAGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCCAAAATTATGGTCAATCCCAAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAACCATCATGGATGTGTGTTCTACTTAAGGTTAATAAATTTTGGTTCGAATCTATTATTTTGATTTTACTTTTTGCATTGTTCACAAAATCCACCGAGTATCACAAAGTATCAAAATGACAAAGAGGTATATATTAAATCAGTATTGTATTTGCACTTCCATCTATCACTCGGCTTATATATAGAATCCAAACGACGTTAACATAAATTTAGAATTTCACTTTCTTGATTCTGGTAGAAGACCTCTTTTTGCTGATTGTTGGTATATATTTTATGTAGTTAAGTTCATTCTCAGCTTCACTTTATGCCTTTCTAGGTTCATTCACATCACTTCTATTTGATAATTAGAAAACTGTGGAGTTCTATTGGAACATTCATTTCTGTTGTGGTGTATGGTCTGTAGATCTATTGTTTAGCTTTTTTTTCGTCAATATTGGCTTCGTGTTTCATGCGTGCATCTGTGGATACCTTCTCATTCAATTCCCGTTGATGAAAGTTTCATCAATTAAAGAAAATAAACACATCGCCAAAACTTGAGCATAACTCAACGGCTTGAGACATATAGTATATGTTCGAGTTCAGAAATTCGAATTTCAGCCATCCCATGATCAACTTTTAAAAGAAAAAACCTATTAATTTTGTTCTTTCACACATGGGGTTGAGGGTACCCTTTTTGTTTGTTTTCGGATTTTGAGATTAATGTTTTAGGCTATCCTAAAGTGAAGGTTCTTATAGAGAAGATGGATCTTAATTGGAATCGTCTATGATGATTATTGATTTATGATTAATTAGGACTAATGACTGTTGCTTTGTGAATATTTGTACCATTTCATTTCTAAGCTCTAGTTGTTATTGATTTTTGAATCAGAAATGTTTGGTTGTTGCTTTGTTCGTTGTGGGTGTTTGCGCTATTTTTTGTCTTTATAAAAAGTCTTATATTCTAAGCTACAATCATCATTTTTTTTTCTTACTAGGTTTTGCAAGATTCCTTTTTTATAGGTTTGGTAGCCAAAATTTGGTTCAAATGTACTTATTTAAATAACTTGTTCATTGCTTCATGTACAAACACTTTACAAACAATTGTACATATATTAAAGCGTTCACCATTTCTTTCCATATGAGTGTGTTCTACAGTACTTTGTGATTGTTTTGGTGTGTGTAATGGCAGGGCGACAAGAAAAGCAGGGATTCAATTAAAAATAGGGCAAGAATGGTAGGTGAAATGATGACAGTTAATAAAAGTCATAAATGACAATTAATGACATTTAATATATGTCAAACAAGATTAATAATGACACTTACTCTCTGTCATATAATATAAATAATGATATTTATAAAATGTCATAAAATAAAGAATTCATGACATTCATTATCTGTCATGAAAAACACATTTCGTGACAGTTTTGTACAACTGTCATAAAATACTTTTATGGCTGCTACATCAATGACTGCAAATTACTGTCATGAAATCTTTTTATAATAGCATTTAATTGTCATCGTAGGCCGTAACTCTCATCGTACGTAACTCTCATCGTAGAACATTTAACTCTTAAAACATTTATGACACAAAGTTAATGCAATAATTAATTATTAGGATAAAAATTAAGAAATTAACGAAAAATAATTTCAAATATTCAATTTATTATTTTTCGAATTATAGATAACAAATTAACGAAAAATGACTTCAAATATTCAGTTTTTTATTTTTCGAATTATAGATTCAAAATTGAATCCCTCCCTAAAATCTAGCCAAAGATAGTGCAATAATTAATTATTAGGATAAAAATTAAGAAATTAACGAAAAAGAATTTCAAATATTCAATTTTTTATTTTTCGAATTATAGATTTAAAATTGAATCCCTTCCTAAAATCATGCCAAAGATAAATAGTAAGAAATAAAGGAAAAAGAATTCAAAGATTCAATTTTTTACAAACATTGTATCAATCCTTTCCTAAAATCATGACAAATATAATGCAAATAATTATCATAAATTAG

mRNA sequence

ATGAGTGGAAGCCTACGATGGGACGATCGCCTCATGGACTCTTTAAAGAACTTTGATTTTAGTAGCCCTAAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCCAAAATTATGGTCAATCCCAAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAACCATCATGGATGTAATTCAAAGATTCAATTTTTTACAAACATTGTATCAATCCTTTCCTAAAATCATGACAAATATAATGCAAATAATTATCATAAATTAG

Coding sequence (CDS)

ATGAGTGGAAGCCTACGATGGGACGATCGCCTCATGGACTCTTTAAAGAACTTTGATTTTAGTAGCCCTAAAGTTAAGCAGCAATTTGATCAAATTGGGCTTACACCTGAAGAAGTTATTTCCAAAATTATGGTCAATCCCAAAATTGCAATGGCATTTCAAAATCCAAGAGTTCAAGCAACCATCATGGATGTAATTCAAAGATTCAATTTTTTACAAACATTGTATCAATCCTTTCCTAAAATCATGACAAATATAATGCAAATAATTATCATAAATTAG

Protein sequence

MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQATIMDVIQRFNFLQTLYQSFPKIMTNIMQIIIIN
Homology
[Close]
BLAST of IVF0006783 vs. ExPASy Swiss-Prot
Match: Q8GT66 (Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-22
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           M G   WD R+MD+LKNFD +SP VKQQFDQIGL+P+EVISKIM NP +AMAFQNPRVQA
Sbjct: 338 MGGGTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQA 397

Query: 61  TIMDVIQ 68
            IMD  Q
Sbjct: 398 AIMDCSQ 404

[Close]
BLAST of IVF0006783 vs. ExPASy Swiss-Prot
Match: Q9FMD5 (Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-21
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS  WD R+ D+LKNFD +SP+VKQQF+QIGLTPEEVISKIM NP +AMAFQNPRVQA
Sbjct: 351 MSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQA 410

Query: 61  TIMDVIQR-FNFLQTLYQSFPKIM 84
            +M+  +   N ++  YQ+  ++M
Sbjct: 411 ALMECSENPMNIMK--YQNDKEVM 432

[Close]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match: A0A2J6LB47 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X25461 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.0e-23
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           M GS  WD+R+MDSLKNFD SSP+VK+QFDQIGLTPEEVISKIM NP++AMAFQNPRVQA
Sbjct: 351 MGGSPEWDNRMMDSLKNFDISSPEVKEQFDQIGLTPEEVISKIMANPEVAMAFQNPRVQA 410

Query: 61  TIMDVIQRFNFLQTLY 77
            IMDV+  FN +  L+
Sbjct: 411 AIMDVMDVFNKISELF 426

[Close]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match: A0A6J1JYZ5 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA
Sbjct: 318 MSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQA 377

Query: 61  TIMDVIQRFNFLQTLYQSFPKIM 84
            IMD  Q      T YQ+  ++M
Sbjct: 378 AIMDCSQN-PLSITKYQNDKEVM 399

[Close]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match: A0A6J1K0V5 (protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489149 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA
Sbjct: 321 MSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQA 380

Query: 61  TIMDVIQRFNFLQTLYQSFPKIM 84
            IMD  Q      T YQ+  ++M
Sbjct: 381 AIMDCSQN-PLSITKYQNDKEVM 402

[Close]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match: A0A6J1FE53 (protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444690 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA
Sbjct: 318 MSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQA 377

Query: 61  TIMDVIQ 68
            IMD  Q
Sbjct: 378 AIMDCSQ 384

[Close]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match: A0A6J1FIY5 (protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444690 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIG+TPEEVISK+M NP+IAMAFQNPRVQA
Sbjct: 321 MSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGMTPEEVISKMMANPEIAMAFQNPRVQA 380

Query: 61  TIMDVIQ 68
            IMD  Q
Sbjct: 381 AIMDCSQ 387

[Close]
BLAST of IVF0006783 vs. NCBI nr
Match: KAA3458437.1 (protein TIC 40, chloroplastic [Gossypium australe])

HSP 1 Score: 111 bits (278), Expect = 1.89e-29
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
          M GS  WD+R+MDSLKNFD +SP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA
Sbjct: 16 MGGSSEWDNRMMDSLKNFDLNSPEVKQQFDQIGLTPEEVISKIMANPEVAMAFQNPRVQA 75

Query: 61 TIMDVIQ 67
           IMD  Q
Sbjct: 76 AIMDCSQ 82

[Close]
BLAST of IVF0006783 vs. NCBI nr
Match: XP_042486801.1 (protein TIC 40, chloroplastic-like [Macadamia integrifolia])

HSP 1 Score: 110 bits (275), Expect = 3.50e-29
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
          M GS  WD+++MDSLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA
Sbjct: 1  MGGSDEWDNQMMDSLKNFDLSSPQVKQQFDQIGLTPEEVISKIMANPEVAMAFQNPRVQA 60

Query: 61 TIMDVIQ 67
           IMD  Q
Sbjct: 61 AIMDCSQ 67

[Close]
BLAST of IVF0006783 vs. NCBI nr
Match: KAE8673161.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 109 bits (273), Expect = 6.67e-29
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
          M GS  WD+R+MDSLKNFD +SP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQ 
Sbjct: 1  MGGSSEWDNRMMDSLKNFDLNSPEVKQQFDQIGLTPEEVISKIMANPEVAMAFQNPRVQE 60

Query: 61 TIMDVIQ 67
           IMD  Q
Sbjct: 61 AIMDCSQ 67

[Close]
BLAST of IVF0006783 vs. NCBI nr
Match: KAF5201246.1 (Tic 40 protein [Thalictrum thalictroides])

HSP 1 Score: 109 bits (273), Expect = 7.06e-29
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 1  MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
          M GS  WD+++M+SLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP++AMAFQNPRVQA
Sbjct: 1  MGGSNEWDNKMMESLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEVAMAFQNPRVQA 60

Query: 61 TIMDVIQ 67
           IMD  Q
Sbjct: 61 AIMDCSQ 67

[Close]
BLAST of IVF0006783 vs. NCBI nr
Match: XP_038877066.1 (protein TIC 40, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 117 bits (293), Expect = 7.33e-29
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS +WDDRLMDSLKNFD SSP+VKQQFDQIGLTPEEVISKIM NP+IAMAFQNPRVQA
Sbjct: 316 MSGSPQWDDRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQA 375

Query: 61  TIMDVIQ 67
            IMD  Q
Sbjct: 376 AIMDCSQ 382

[Close]
BLAST of IVF0006783 vs. TAIR 10
Match: AT5G16620.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-22
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 0 

Query: 1   MSGSLRWDDRLMDSLKNFDFSSPKVKQQFDQIGLTPEEVISKIMVNPKIAMAFQNPRVQA 60
           MSGS  WD R+ D+LKNFD +SP+VKQQF+QIGLTPEEVISKIM NP +AMAFQNPRVQA
Sbjct: 351 MSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQA 410

Query: 61  TIMDVIQR-FNFLQTLYQSFPKIM 84
            +M+  +   N ++  YQ+  ++M
Sbjct: 411 ALMECSENPMNIMK--YQNDKEVM 432

The following BLAST results are available for this feature:
BLAST of IVF0006783 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GT665.5e-2273.13Protein TIC 40, chloroplastic OS=Pisum sativum OX=3888 GN=TIC40 PE=1 SV=1[more]
Q9FMD56.1e-2161.90Protein TIC 40, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC40 PE=1 SV=1[more]
BLAST of IVF0006783 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2J6LB474.0e-2373.68Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_1X25461 PE=4 SV=1[more]
A0A6J1JYZ51.2e-2272.29protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1K0V51.2e-2272.29protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FE531.2e-2283.58protein TIC 40, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1FIY51.2e-2283.58protein TIC 40, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of IVF0006783 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA3458437.11.89e-2979.10protein TIC 40, chloroplastic [Gossypium australe][more]
XP_042486801.13.50e-2979.10protein TIC 40, chloroplastic-like [Macadamia integrifolia][more]
KAE8673161.16.67e-2977.61Detected protein of unknown function [Hibiscus syriacus][more]
KAF5201246.17.06e-2977.61Tic 40 protein [Thalictrum thalictroides][more]
XP_038877066.17.33e-2986.57protein TIC 40, chloroplastic isoform X2 [Benincasa hispida][more]
BLAST of IVF0006783 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G16620.14.3e-2261.90hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.260.100coord: 36..91
e-value: 3.8E-9
score: 38.3
NoneNo IPR availablePANTHERPTHR47296PROTEIN TIC 40, CHLOROPLASTICcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006783.1IVF0006783.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0045037 protein import into chloroplast stroma
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane