IVF0006782 (gene) Melon (IVF77) v1

Overview
NameIVF0006782
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr10: 25894385 .. 25894905 (+)
RNA-Seq ExpressionIVF0006782
SyntenyIVF0006782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTTGACTTACCCAAGGAAAGGAAGCTATCTCCAACCAGGCCTACCGCGAGACCCGAGAACCCAAGTGTCAAATCTGAACTACCTTCAAAGGAGAAAAGTAGGGCCATAACTTATTCCAATATTCAAGCTCTAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGACCCGGAGCGGAGGAAGGAAGGCTTAGGTGGCTTGGTGAAACAAGGAGCTCGGCTCGGCTTGAAGGCGCTCGGCTCGGCTCGGCTCGGCTCCACCTCGGCTCGGCTCGGCTTGGTCTCGGCTCGGCTCGGCTTGTGGCTCGGCTCGGCTTGGCCTCGGCTCGGCTCAACTCGGCTTACTCGGCTTGGTTCTCGGCTTACTCGGCTCGCGGCTCGGCTTGGTTCGGCTGGCGGCTCGGCTCACTCGGCTCGGCTTGCGGCTCACTCGGCTCGGCTTGGACAGCCGGCTTGGAGCCGGGTCGGGTTGGACGAAAGAAAATGGTAG

mRNA sequence

ATGTCCGTTGACTTACCCAAGGAAAGGAAGCTATCTCCAACCAGGCCTACCGCGAGACCCGAGAACCCAAGTGTCAAATCTGAACTACCTTCAAAGGAGAAAAGAGCTCGGCTCGGCTTGAAGGCGCTCGGCTCGGCTCGGCTCGGCTCCACCTCGGCTCGGCTCGGCTTGGTCTCGGCTCGGCTCGGCTTGTGGCTCGGCTCGGCTTGGCCTCGGCTCGGCTCAACTCGGCTTACTCGGCTTGGTTCTCGGCTTACTCGGCTCGCGGCTCGGCTTGGTTCGGCTGGCGGCTCGGCTCACTCGGCTCGGCTTGCGGCTCACTCGGCTCGGCTTGGACAGCCGGCTTGGAGCCGGGTCGGGTTGGACGAAAGAAAATGGTAG

Coding sequence (CDS)

ATGTCCGTTGACTTACCCAAGGAAAGGAAGCTATCTCCAACCAGGCCTACCGCGAGACCCGAGAACCCAAGTGTCAAATCTGAACTACCTTCAAAGGAGAAAAGAGCTCGGCTCGGCTTGAAGGCGCTCGGCTCGGCTCGGCTCGGCTCCACCTCGGCTCGGCTCGGCTTGGTCTCGGCTCGGCTCGGCTTGTGGCTCGGCTCGGCTTGGCCTCGGCTCGGCTCAACTCGGCTTACTCGGCTTGGTTCTCGGCTTACTCGGCTCGCGGCTCGGCTTGGTTCGGCTGGCGGCTCGGCTCACTCGGCTCGGCTTGCGGCTCACTCGGCTCGGCTTGGACAGCCGGCTTGGAGCCGGGTCGGGTTGGACGAAAGAAAATGGTAG

Protein sequence

MSVDLPKERKLSPTRPTARPENPSVKSELPSKEKRARLGLKALGSARLGSTSARLGLVSARLGLWLGSAWPRLGSTRLTRLGSRLTRLAARLGSAGGSAHSARLAAHSARLGQPAWSRVGLDERKW
Homology
BLAST of IVF0006782 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 71/160 (44.38%), Postives = 81/160 (50.62%), Query Frame = 0

Query: 6   PKERKLSPTRPTARPENPSVKSELPSKEKR------------------------------ 65
           P++ KL P +PTARPEN SV S LPS+EK                               
Sbjct: 85  PRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENPERRKEG 144

Query: 66  --------ARLGLKALGSARLGSTSARLGLVSARLGLWLGSAWPRLGSTRLTRLGSRLTR 123
                    RLGLKA GSARLGSTSARLGL SA +    GSA  +LGS    +LGS  T 
Sbjct: 145 LGGLVKQGVRLGLKAFGSARLGSTSARLGLASAHISA-CGSA--QLGS----QLGS--TW 204

BLAST of IVF0006782 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 1   MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK 35
           MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK
Sbjct: 105 MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK 138

BLAST of IVF0006782 vs. ExPASy TrEMBL
Match: A0A5A7VLK0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00770 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 2  SVDLPKERKLSPTRPTARPENPSVKSELPSKEK 35
          SVDLPKERKLSPTRPTARPENPSVKSELPS+EK
Sbjct: 20 SVDLPKERKLSPTRPTARPENPSVKSELPSREK 52

BLAST of IVF0006782 vs. ExPASy TrEMBL
Match: A0A5A7SP62 (CCR4-NOT transcription complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003120 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 51/89 (57.30%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 36  ARLGL---KALGSARLGSTSARLGLVSARLGLWLGSAWPRLGSTRL-TRLGSRLTRLAAR 95
           ARLG     A GSA     SAR G     LG  LGS   RLG  RL  RL +RLTRLAAR
Sbjct: 111 ARLGSARGSARGSAHSARGSARFGSRLGSLGSRLGSLGSRLGLVRLAARLAARLTRLAAR 170

Query: 96  LGSAGGSAHSARLAAHSARLGQPAWSRVG 121
           LGSA GSAHSAR +AHSAR      SR+G
Sbjct: 171 LGSARGSAHSARGSAHSARGSAWFGSRLG 199

BLAST of IVF0006782 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.46e-12
Identity = 72/163 (44.17%), Postives = 84/163 (51.53%), Query Frame = 0

Query: 3   VDLPKERKLSPTRPTARPENPSVKSELPSKEKR--------------------------- 62
           +  P++ KL P +PTARPEN SV S LPS+EK                            
Sbjct: 82  LTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENPERR 141

Query: 63  -----------ARLGLKALGSARLGSTSARLGLVSARLGLWLGSAWPRLGSTRLTRLGSR 122
                       RLGLKA GSARLGSTSARLGL SA +    GSA  +LGS    +LGS 
Sbjct: 142 KEGLGGLVKQGVRLGLKAFGSARLGSTSARLGLASAHISA-CGSA--QLGS----QLGS- 201

BLAST of IVF0006782 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.19e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 1   MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK 34
           MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK
Sbjct: 105 MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK 138

BLAST of IVF0006782 vs. NCBI nr
Match: KAA0068117.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 5.43e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 2  SVDLPKERKLSPTRPTARPENPSVKSELPSKEK 34
          SVDLPKERKLSPTRPTARPENPSVKSELPS+EK
Sbjct: 20 SVDLPKERKLSPTRPTARPENPSVKSELPSREK 52

BLAST of IVF0006782 vs. NCBI nr
Match: KAA0025991.1 (CCR4-NOT transcription complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.14e-07
Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 36  ARLGLKA--LGSARLGSTSAR-LGLVSARLGLWLGSAWPRLGSTRL----TRLGSRLTRL 95
           ARLGL +  LGSAR  + SAR      +RLG  LGS   RLGS RL    TRL +RLTRL
Sbjct: 50  ARLGLDSARLGSARGSAHSARGSAWFGSRLGSRLGSLGSRLGSVRLAARLTRLAARLTRL 109

Query: 96  AARLGSAGGSAHSARLAAHSARLGQPAWSRVG 120
           AARLGSA GSA   R +AHSAR      SR+G
Sbjct: 110 AARLGSARGSA---RGSAHSARGSARFGSRLG 138

BLAST of IVF0006782 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.14e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 1   MSVDLPKERKLSPTRPTARPENPSVKSELPSKEK 34
           +SVDLP+ERKLSPTRP A PEN SV S LPS+EK
Sbjct: 141 ISVDLPQERKLSPTRPAAEPENLSVNSALPSREK 174

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMJ91.5e-0944.38NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UGC74.9e-08100.00NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VLK05.4e-0796.97Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SP622.1e-0657.30CCR4-NOT transcription complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
KAA0057143.11.46e-1244.17NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0054224.16.19e-11100.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0068117.15.43e-0996.97retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025991.13.14e-0756.52CCR4-NOT transcription complex subunit 1 [Cucumis melo var. makuwa][more]
KAA0032698.11.14e-0476.47NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006782.1IVF0006782.1mRNA