IVF0006762 (gene) Melon (IVF77) v1

Overview
NameIVF0006762
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr02: 9391081 .. 9391533 (-)
RNA-Seq ExpressionIVF0006762
SyntenyIVF0006762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTTGCAGTTCCCTAGTCCAAGCTCTTGGTTTCCATACCAGGTTACCAATCATCAATATAAGCTTCATTCTTTCTCTATCTTCGAATTCAGACCAACCGCCTCAAATGTGTCGAGTTACATTGAACTCACAAACAAGAGTCCGAACAAAATACAAGGAGCAATATGGGAATGCTAATCTAGAGGAAGCTGGCAGTCTCAATGCTCATGAAACTCAAGACTCAGATGTTGAATCAGTTGTAAGAGTAAGTAGTGAGGAATTAGAAGAGGTTGAAGTAGGGGAAGAGGCTGAAGATTCTGAAATTTTGGAGAACATAATCAATGATTTCCTCGAGTTGTTTGTGGAGGAAGGTATGGAAGAAGAACAACCTCCTCTCCAGAAATTTAGAGAAGAAATCCCACAGCACTTGCTTGGCATCATTGAAGCTTGTGGTATATCTTTCGTTTGA

mRNA sequence

ATGGAAGTTTGCAGTTCCCTAGTCCAAGCTCTTGGTTTCCATACCAGGTTACCAATCATCAATATAAGCTTCATTCTTTCTCTATCTTCGAATTCAGACCAACCGCCTCAAATGTGTCGAGTTACATTGAACTCACAAACAAGAGTCCGAACAAAATACAAGGAGCAATATGGGAATGCTAATCTAGAGGAAGCTGGCAGTCTCAATGCTCATGAAACTCAAGACTCAGATGTTGAATCAGTTGTAAGAGTAAGTAGTGAGGAATTAGAAGAGGTTGAAGTAGGGGAAGAGGCTGAAGATTCTGAAATTTTGGAGAACATAATCAATGATTTCCTCGAGTTGTTTGTGGAGGAAGGTATGGAAGAAGAACAACCTCCTCTCCAGAAATTTAGAGAAGAAATCCCACAGCACTTGCTTGGCATCATTGAAGCTTGTGGTATATCTTTCGTTTGA

Coding sequence (CDS)

ATGGAAGTTTGCAGTTCCCTAGTCCAAGCTCTTGGTTTCCATACCAGGTTACCAATCATCAATATAAGCTTCATTCTTTCTCTATCTTCGAATTCAGACCAACCGCCTCAAATGTGTCGAGTTACATTGAACTCACAAACAAGAGTCCGAACAAAATACAAGGAGCAATATGGGAATGCTAATCTAGAGGAAGCTGGCAGTCTCAATGCTCATGAAACTCAAGACTCAGATGTTGAATCAGTTGTAAGAGTAAGTAGTGAGGAATTAGAAGAGGTTGAAGTAGGGGAAGAGGCTGAAGATTCTGAAATTTTGGAGAACATAATCAATGATTTCCTCGAGTTGTTTGTGGAGGAAGGTATGGAAGAAGAACAACCTCCTCTCCAGAAATTTAGAGAAGAAATCCCACAGCACTTGCTTGGCATCATTGAAGCTTGTGGTATATCTTTCGTTTGA

Protein sequence

MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGMEEEQPPLQKFREEIPQHLLGIIEACGISFV
Homology
BLAST of IVF0006762 vs. ExPASy TrEMBL
Match: A0A5D3E3H0 (Putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00300 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA 60
           MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA
Sbjct: 431 MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA 490

Query: 61  NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM 120
           NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM
Sbjct: 491 NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM 550

Query: 121 EEEQPPLQKFREEIPQHLLGIIEACGISFV 151
           EEEQPPLQKFREEIPQHLLGIIEACGISFV
Sbjct: 551 EEEQPPLQKFREEIPQHLLGIIEACGISFV 580

BLAST of IVF0006762 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 59  NANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEE 118
           N  LEE GSL   E QD DVESV  VSSEELEE + GEE EDSEILENII+D   LFVEE
Sbjct: 352 NNKLEEDGSL---EDQDPDVESVPSVSSEELEEFKAGEEVEDSEILENIISDVRGLFVEE 411

Query: 119 GME 122
            ++
Sbjct: 412 SVQ 411

BLAST of IVF0006762 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 59  NANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEE 118
           N  LEE GSL   E QD DVESV  VSSEELEE + GEE EDSEILENII+D   LFVEE
Sbjct: 367 NNKLEEDGSL---EDQDPDVESVPSVSSEELEEFKAGEEVEDSEILENIISDVRGLFVEE 426

Query: 119 GME 122
            ++
Sbjct: 427 SVQ 426

BLAST of IVF0006762 vs. ExPASy TrEMBL
Match: A0A5A7TFB7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002920 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 42  TLNSQTRV-RTKYKEQYGNANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAED 101
           TLNSQ    +   KEQYGN   EEAGS N   TQDSDVE VV +SSEELEEVEVGEEAE+
Sbjct: 185 TLNSQQECEKNTCKEQYGNGTPEEAGSPNDQGTQDSDVELVVSLSSEELEEVEVGEEAEN 244

BLAST of IVF0006762 vs. ExPASy TrEMBL
Match: A0A5D3C4W9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001040 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 42  TLNSQTRV-RTKYKEQYGNANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAE 100
           TLNSQ    +   K+QYGN   EEAGS N   TQDSDVE VV +SSEELEEVEVGEEAE
Sbjct: 185 TLNSQQECEKNTCKKQYGNGTPEEAGSPNDQGTQDSDVELVVSLSSEELEEVEVGEEAE 243

BLAST of IVF0006762 vs. NCBI nr
Match: TYK30617.1 (putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (733), Expect = 1.62e-91
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0

Query: 1   MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA 60
           MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA
Sbjct: 431 MEVCSSLVQALGFHTRLPIINISFILSLSSNSDQPPQMCRVTLNSQTRVRTKYKEQYGNA 490

Query: 61  NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM 120
           NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM
Sbjct: 491 NLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEEGM 550

Query: 121 EEEQPPLQKFREEIPQHLLGIIEACGISFV 150
           EEEQPPLQKFREEIPQHLLGIIEACGISFV
Sbjct: 551 EEEQPPLQKFREEIPQHLLGIIEACGISFV 580

BLAST of IVF0006762 vs. NCBI nr
Match: KAA0041893.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 9.71e-10
Identity = 41/59 (69.49%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 42  TLNSQTRV-RTKYKEQYGNANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAE 99
           TLNSQ    +   KEQYGN   EEAGS N   TQDSDVE VV +SSEELEEVEVGEEAE
Sbjct: 185 TLNSQQECEKNTCKEQYGNGTPEEAGSPNDQGTQDSDVELVVSLSSEELEEVEVGEEAE 243

BLAST of IVF0006762 vs. NCBI nr
Match: TYK05416.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.58e-09
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 42  TLNSQTRV-RTKYKEQYGNANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAE 99
           TLNSQ    +   K+QYGN   EEAGS N   TQDSDVE VV +SSEELEEVEVGEEAE
Sbjct: 185 TLNSQQECEKNTCKKQYGNGTPEEAGSPNDQGTQDSDVELVVSLSSEELEEVEVGEEAE 243

BLAST of IVF0006762 vs. NCBI nr
Match: KAA0031952.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.44e-09
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 59  NANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEE 118
           N  LEE GSL   E QD DVESV  VSSEELEE + GEE EDSEILENII+D   LFVEE
Sbjct: 352 NNKLEEDGSL---EDQDPDVESVPSVSSEELEEFKAGEEVEDSEILENIISDVRGLFVEE 411

Query: 119 GME 121
            ++
Sbjct: 412 SVQ 411

BLAST of IVF0006762 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.53e-09
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 59  NANLEEAGSLNAHETQDSDVESVVRVSSEELEEVEVGEEAEDSEILENIINDFLELFVEE 118
           N  LEE GSL   E QD DVESV  VSSEELEE + GEE EDSEILENII+D   LFVEE
Sbjct: 367 NNKLEEDGSL---EDQDPDVESVPSVSSEELEEFKAGEEVEDSEILENIISDVRGLFVEE 426

Query: 119 GME 121
            ++
Sbjct: 427 SVQ 426

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3H01.4e-73100.00Putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis m... [more]
A0A5A7SLN93.8e-0766.67Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3CZ353.8e-0766.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TFB74.9e-0768.33Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3C4W91.9e-0667.80Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
TYK30617.11.62e-91100.00putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis mel... [more]
KAA0041893.19.71e-1069.49putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK05416.13.58e-0967.80putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0031952.15.44e-0966.67Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
TYK16775.15.53e-0966.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006762.1IVF0006762.1mRNA