IVF0006757 (gene) Melon (IVF77) v1

Overview


Name	IVF0006757
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 5886991 .. 5887316 (-)
RNA-Seq Expression	IVF0006757
Synteny	IVF0006757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATGGGGTGAAGGGAAAGGAAGACATGGTTTGTCGTCTTCACTAGTATTCCATCTATGGACTAAAACAATCTCCAGACAGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAAGGATTCCACAGAAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAAAGGTACGTACATCCATCTACTGTTATATGTAGATGATATGATACTAGTGTCTAAGGATTACGCTAAAATCTGTGAACTCAAGAAATAA

mRNA sequence

ATGAATGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATGGGGTGAAGGGAAAGGAAGACATGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAAGGATTCCACAGAAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAAAGGTACGTACATCCATCTACTGTTATATGTAGATGATATGATACTAGTGTCTAAGGATTACGCTAAAATCTGTGAACTCAAGAAATAA

Coding sequence (CDS)

ATGAATGTCACCATAACATTCCTTCATGGAGAACTGGAGGAAGTGATTTACATGGCTCAACCTAAGGGCTATGGGGTGAAGGGAAAGGAAGACATGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAAGGATTCCACAGAAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAAAGGTACGTACATCCATCTACTGTTATATGTAGATGATATGATACTAGTGTCTAAGGATTACGCTAAAATCTGTGAACTCAAGAAATAA

Protein sequence

MNVTITFLHGELEEVIYMAQPKGYGVKGKEDMWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK

Homology

[Close]

BLAST of IVF0006757 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-16
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            ++V   FLHG+LEE IYM QP+G+ V GK+ M                 WY++FD+F+  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELK 90
            Q + +   D CVY+K   +  +I LLLYVDDM++V KD   I +LK
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026

[Close]

BLAST of IVF0006757 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-06
Identity = 28/98 (28.57%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKG-----------------YGVKGKEDMWYIRFDTFILK 60
            ++V   FL G L + +YM+QP G                 YG+K     WY+   T++L 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKD 82
             GF  +  D  ++  L +  + I++L+YVDD+++   D
Sbjct: 1107 VGFVNSISDTSLF-VLQRGRSIIYMLVYVDDILITGND 1143

[Close]

BLAST of IVF0006757 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39
Identity = 84/107 (78.50%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
           M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 774 MDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSPRQWYIRFDTFILK 833

Query: 61  QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 91
           QGFHRNSYDACVYWKLSQKGTYI+LLLYVDDMILVSKDY +ICELKK
Sbjct: 834 QGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKK 880

[Close]

BLAST of IVF0006757 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 934  MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 993

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 91
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 994  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 1040

[Close]

BLAST of IVF0006757 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
           M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 764 MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 823

Query: 61  QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 91
           QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 824 QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 870

[Close]

BLAST of IVF0006757 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 934  MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 993

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 91
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 994  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 1040

[Close]

BLAST of IVF0006757 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYI FDTFILK
Sbjct: 906  MDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYISFDTFILK 965

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 91
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA ICELKK
Sbjct: 966  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKK 1012

[Close]

BLAST of IVF0006757 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 1.12e-46
Identity = 84/107 (78.50%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
           M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 774 MDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSPRQWYIRFDTFILK 833

Query: 61  QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 90
           QGFHRNSYDACVYWKLSQKGTYI+LLLYVDDMILVSKDY +ICELKK
Sbjct: 834 QGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKK 880

[Close]

BLAST of IVF0006757 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 9.78e-46
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
           M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 764 MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 823

Query: 61  QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 90
           QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 824 QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 870

[Close]

BLAST of IVF0006757 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 9.81e-46
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 934  MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 993

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 90
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 994  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 1040

[Close]

BLAST of IVF0006757 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 9.82e-46
Identity = 83/107 (77.57%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT  FLHGELEEVIYMAQPKGY VKGKEDM                 WYIRFDTFILK
Sbjct: 934  MDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYIRFDTFILK 993

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 90
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA+ICELKK
Sbjct: 994  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAEICELKK 1040

[Close]

BLAST of IVF0006757 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 3.40e-45
Identity = 83/107 (77.57%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1    MNVTITFLHGELEEVIYMAQPKGYGVKGKEDM-----------------WYIRFDTFILK 60
            M+VT TFLHGELEEVIYMAQPKGY VKGKEDM                 WYI FDTFILK
Sbjct: 906  MDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWYISFDTFILK 965

Query: 61   QGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELKK 90
            QGFHRNSYDACVYWK SQKGTYI+LLLYVDDMILVSKDYA ICELKK
Sbjct: 966  QGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKK 1012

[Close]

BLAST of IVF0006757 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-07
Identity = 30/110 (27.27%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 1   MNVTITFLHGELEEVIYMAQPKG---------------------YGVKGKEDMWYIRFDT 60
           ++++  FL+G+L+E IYM  P G                     YG+K     W+++F  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  FILKQGFHRNSYDACVYWKLSQKGTYIHLLLYVDDMILVSKDYAKICELK 90
            ++  GF ++  D   + K++    ++ +L+YVDD+I+ S + A + ELK
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITAT-LFLCVLVYVDDIIICSNNDAAVDELK 301

The following BLAST results are available for this feature:

BLAST of IVF0006757 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.0e-16	41.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	7.0e-06	28.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of IVF0006757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGM4	5.0e-39	78.50	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3DNU1	3.2e-38	77.57	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CTV2	3.2e-38	77.57	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	3.2e-38	77.57	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	9.4e-38	77.57	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of IVF0006757 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067243.1	1.12e-46	78.50	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
TYK13826.1	9.78e-46	77.57	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	9.81e-46	77.57	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	9.82e-46	77.57	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	3.40e-45	77.57	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of IVF0006757 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.8e-07	27.27	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..90 e-value: 1.1E-9 score: 38.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006757.2	IVF0006757.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding