IVF0006738 (gene) Melon (IVF77) v1

Overview
NameIVF0006738
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L23, chloroplastic
Locationchr10: 15412108 .. 15413578 (-)
RNA-Seq ExpressionIVF0006738
SyntenyIVF0006738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTCGCATTCTTTTATCTAGGGCTGCACCACCACCAGATTCGTAGCCGCCGGTAACCTCTCTCTTGAATGCTTCTTAATTTTTTTCGTTATCTCAGGATTTCAGGATCTTTCCCTTCCTCTTACCTCTTTTGTTATAATATTCTTGTTTAACATTGTTTGGGTTAAATTTGTGTGTTGTGATTTTGGTTCCGTGGAGTAACTGTTGTTCATATCGTTTTTCTTCTCATCTTCATTATTGCTTGCTTGGTCTGTAGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGGTATGTGCGCTTTGTCTTTGTTAAAGTATTAGTGTACTATGTCCTTTTTCCTCTTAATTTTGCTCACTGCATTTTCATTTTTGTGTTTTAGATGGTACTTTTCGTTTTCTTGTTTTAATGGTAGCTCCCAAGTTCTTGAGATGGTTTAATGGATATTTTCAGTATGTAATAAACTACTCTCTCCCTTGATGCTTATGAGGTTTTGCAATGCAGAGTTTGTATTTAATTTGATGGTTTTGCAGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGGTATGGTGAATGAATTTAGAAGCAACACTTTGATACCAAAGAATACCATGTTGCTTGTTTACATGCCAATATTAGTATCTAGGGTTAAATTACAACTACCCTAAACTACATTGTGATGATGACAAAGTATAATCCTACTTATGTAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAAACTTCCTAGGAAAGTATTTGCATTTCAGTGTCCACAATTTTGTTTAAATATATTTGACTGCATCTTGTTGGAATCCTAATCTTTCTTGCTGTTTTTTCTTCTATATATATTGGTAATTAGCTTGCAGCTAGCTCTGGTTGATTGAGTTCAAAACACTCGTGGAGTGTGTTTGAATTATTTGTATTTCAAACACCTTTTTAACATTTCTGAATTCTCATCTTCATAACCTGGCTGTATGGCACCCTACCCGCTCTGTTTTGGCCTTGTCCACTAGGAGTGGAAAGTGGGTCTAGAGGAAATAAGTTGAAACTATGATGGTGCTTATTTAGAATTTAAGGGCCC

mRNA sequence

TTTCTTCGCATTCTTTTATCTAGGGCTGCACCACCACCAGATTCGTAGCCGCCGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAAACTTCCTAGGAAAGTATTTGCATTTCAGTGTCCACAATTTTGTTTAAATATATTTGACTGCATCTTGTTGGAATCCTAATCTTTCTTGCTGTTTTTTCTTCTATATATATTGGTAATTAGCTTGCAGCTAGCTCTGGTTGATTGAGTTCAAAACACTCGTGGAGTGTGTTTGAATTATTTGTATTTCAAACACCTTTTTAACATTTCTGAATTCTCATCTTCATAACCTGGCTGTATGGCACCCTACCCGCTCTGTTTTGGCCTTGTCCACTAGGAGTGGAAAGTGGGTCTAGAGGAAATAAGTTGAAACTATGATGGTGCTTATTTAGAATTTAAGGGCCC

Coding sequence (CDS)

ATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAA

Protein sequence

MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-66
Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRA+KKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-65
Identity = 134/154 (87.01%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS    NKLDQY ILKYPLTTESAMKKIEDNN LVF+VDI+ADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A + KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS  P NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIK AVKKMY+IQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-64
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.6e-64
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match: A0A5A7SY40 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00400 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK
Sbjct: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match: A0A1S3CBK7 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499114 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK
Sbjct: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match: A0A1S4E2S8 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499114 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65
           DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM
Sbjct: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65

Query: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125
           NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI
Sbjct: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.8e-72
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match: A0A0A0KNR3 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.8e-72
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. NCBI nr
Match: XP_008460233.1 (PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo] >KAA0035970.1 60S ribosomal protein L23a isoform X1 [Cucumis melo var. makuwa] >TYK30433.1 60S ribosomal protein L23a isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (743), Expect = 1.05e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK
Sbjct: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. NCBI nr
Match: XP_016902523.1 (PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis melo])

HSP 1 Score: 282 bits (722), Expect = 1.68e-95
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 

Query: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65
           DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM
Sbjct: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65

Query: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125
           NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI
Sbjct: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 153
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 1.38e-94
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. NCBI nr
Match: XP_004149813.1 (60S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Csa_007796 [Cucumis sativus])

HSP 1 Score: 280 bits (716), Expect = 1.38e-94
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. NCBI nr
Match: XP_038890217.1 (60S ribosomal protein L23a [Benincasa hispida])

HSP 1 Score: 280 bits (716), Expect = 1.38e-94
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPWNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of IVF0006738 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-65
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 245.0 bits (624), Expect = 4.0e-65
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of IVF0006738 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 233.8 bits (595), Expect = 9.2e-62
Identity = 128/154 (83.12%), Postives = 134/154 (87.01%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of IVF0006738 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT352.7e-6688.3160S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077613.0e-6587.0160S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
O226441.1e-6487.0160S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD461.9e-6486.3660S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9M3C35.6e-6485.7160S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of IVF0006738 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY404.3e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3CBK74.3e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499114... [more]
A0A1S4E2S81.5e-72100.0050S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499114... [more]
A0A5D3C5W35.8e-7296.0850S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0KNR35.8e-7296.0850S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G505... [more]
BLAST of IVF0006738 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460233.11.05e-98100.00PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo] >KAA0035970.1 60... [more]
XP_016902523.11.68e-95100.00PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis melo][more]
XP_008463516.11.38e-9496.08PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_004149813.11.38e-9496.0860S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Cs... [more]
XP_038890217.11.38e-9496.0860S ribosomal protein L23a [Benincasa hispida][more]
BLAST of IVF0006738 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.11.4e-6586.36ribosomal protein L23AA [more]
AT2G39460.21.4e-6586.36ribosomal protein L23AA [more]
AT3G55280.14.0e-6585.71ribosomal protein L23AB [more]
AT3G55280.24.0e-6585.71ribosomal protein L23AB [more]
AT3G55280.39.2e-6283.12ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..153
e-value: 4.0E-51
score: 174.2
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 5.8E-14
score: 52.2
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 21.915752
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 1.4E-18
score: 66.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006738.1IVF0006738.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome