IVF0006637 (gene) Melon (IVF77) v1

Overview
NameIVF0006637
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 4534861 .. 4535034 (-)
RNA-Seq ExpressionIVF0006637
SyntenyIVF0006637
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTATGAATTCTTTGTCCTTTGTCATTCTCAGCATGACAACATCATCACGTGCCCCAAAGCATGTATGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATCTGGTGTCTATGAGGGCTGGAAATCAAACAATGGTATGTTCCGGCCAAGTTTCCTAG

mRNA sequence

ATGAGTTCTATGAATTCTTTGTCCTTTGTCATTCTCAGCATGACAACATCATCACGTGCCCCAAAGCATGTATGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATCTGGTGTCTATGAGGGCTGGAAATCAAACAATGGTATGTTCCGGCCAAGTTTCCTAG

Coding sequence (CDS)

ATGAGTTCTATGAATTCTTTGTCCTTTGTCATTCTCAGCATGACAACATCATCACGTGCCCCAAAGCATGTATGGACGAAGGAGGAGGAGGGCACTCTTGTAGAGTGTTTAGTGGATCTGGTGTCTATGAGGGCTGGAAATCAAACAATGGTATGTTCCGGCCAAGTTTCCTAG

Protein sequence

MSSMNSLSFVILSMTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS
Homology
[Close]
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match: A0A5A7T630 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM 51
          MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
Sbjct: 1  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM 37

[Close]
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match: A0A5D3BYQ3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold758G00150 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.8e-08
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 58
          M+TS+RA +HVWTKEEEGTLVECL++LV MR GN+ MV  GQV+
Sbjct: 36 MSTSNRASRHVWTKEEEGTLVECLMELVPMRDGNRIMVRFGQVT 79

[Close]
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match: A0A5D3CAP9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001120 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 58
          M+TS+RAP+HVWTKEEEGT VECL+DLVSM  GN   + S QV+
Sbjct: 34 MSTSTRAPRHVWTKEEEGTFVECLMDLVSMGNGNPIKIRSSQVT 77

[Close]
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 17  SSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM 51
           SSRAPKHVWTKEE+GTLVEC VDLVSMR GN+TM
Sbjct: 175 SSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM 208

[Close]
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match: A0A5A7TCF2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00890 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 9   FVILSMTTSSRAPKHVWTKEEE-GTLVECLVDLVSMRAG-NQTM 51
           F+ILSMTTSSRA KHVWTKEEE GTLVECL DLVSM  G NQ M
Sbjct: 136 FIILSMTTSSRALKHVWTKEEEKGTLVECLRDLVSMEGGENQRM 179

[Close]
BLAST of IVF0006637 vs. NCBI nr
Match: KAA0037606.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09348.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.22e-16
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM 50
          MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM
Sbjct: 1  MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTM 37

[Close]
BLAST of IVF0006637 vs. NCBI nr
Match: KAA0025278.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07389.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.76e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 57
          M+TS+RAP+HVWTKEEEGT VECL+DLVSM  GN   + S QV+
Sbjct: 34 MSTSTRAPRHVWTKEEEGTFVECLMDLVSMGNGNPIKIRSSQVT 77

[Close]
BLAST of IVF0006637 vs. NCBI nr
Match: KAA0035633.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30909.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.40e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 57
          M TSSRAP HVWTK+EE TLVECLVDLV M  GN TMV S +++
Sbjct: 1  MATSSRAPWHVWTKKEEDTLVECLVDLVVMEDGNPTMVRSDKIT 44

[Close]
BLAST of IVF0006637 vs. NCBI nr
Match: KAA0062979.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.05e-11
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 57
          M+TS+ AP+HVWTKEEEGTLVECL++LVSM   N+ MV SGQV+
Sbjct: 1  MSTSNCAPRHVWTKEEEGTLVECLMELVSMGDENRIMVRSGQVT 44

[Close]
BLAST of IVF0006637 vs. NCBI nr
Match: TYK04240.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 4.39e-11
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 14 MTTSSRAPKHVWTKEEEGTLVECLVDLVSMRAGNQTMVCSGQVS 57
          M+TS+RA +HVWTKEEEGTLVECL++LV MR GN+ MV  GQV+
Sbjct: 36 MSTSNRASRHVWTKEEEGTLVECLMELVPMRDGNRIMVRFGQVT 79

The following BLAST results are available for this feature:
BLAST of IVF0006637 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006637 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6309.6e-12100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BYQ33.8e-0870.45Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAP98.4e-0868.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V0268.4e-0888.24Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TCF21.1e-0781.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0006637 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037606.12.22e-16100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK09348.1 retrotransposon p... [more]
KAA0025278.17.76e-1268.18retrotransposon protein [Cucumis melo var. makuwa] >TYK07389.1 retrotransposon p... [more]
KAA0035633.12.40e-1170.45retrotransposon protein [Cucumis melo var. makuwa] >TYK30909.1 retrotransposon p... [more]
KAA0062979.13.05e-1170.45retrotransposon protein [Cucumis melo var. makuwa][more]
TYK04240.14.39e-1170.45retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0006637 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006637.1IVF0006637.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding