IVF0006630 (gene) Melon (IVF77) v1

Overview


Name	IVF0006630
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr06: 20473519 .. 20473782 (+)
RNA-Seq Expression	IVF0006630
Synteny	IVF0006630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCTGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCTGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCGTTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCTGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAACAATCCTTACCGAAGACTCACCGTGGCCCGGAGTGAAGGAAGGGAGGCTTAG

Protein sequence

MTLVEVVLKGPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLTVARSEGREA

Homology

[Close]

BLAST of IVF0006630 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0006630 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.5e-24
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0006630 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 77
           E NP RR
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0006630 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-21
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0006630 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 88
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0006630 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 1.50e-31
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0006630 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 3.79e-30
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIENNPYRRLT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0006630 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 6.43e-28
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIENNPYRRL 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0006630 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 2.82e-27
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  ENNPYRR 76
           EN P RR
Sbjct: 136 EN-PERR 141

[Close]

BLAST of IVF0006630 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 2.68e-25
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIENNPYRRLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIENNPYRRLT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VARSEGREA 87
           V RS GR+A
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:

BLAST of IVF0006630 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNL7	7.5e-24	86.96	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	7.5e-24	86.96	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UMJ9	1.2e-21	86.57	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	3.5e-21	81.16	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	7.2e-19	75.36	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0006630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054655.1	1.50e-31	86.96	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	3.79e-30	86.96	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	6.43e-28	81.16	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0057143.1	2.82e-27	86.57	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.68e-25	75.36	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006630.1	IVF0006630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane