IVF0006562 (gene) Melon (IVF77) v1

Overview
NameIVF0006562
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy1-copia retrotransposon protein
Locationchr01: 15467371 .. 15467523 (-)
RNA-Seq ExpressionIVF0006562
SyntenyIVF0006562
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAAATGGAGGCATCACTGGTTTGGAAGTTGCCGAACTGAACAAAGCGGTAATGGTTGGGGATTTGCAAGAGAAGGTGAATGAAACGGTGGTGGTGGAGGATTTGGAAGAGAAGACAAACGAAACGATGGTGGTCGAGGATTTTTAA

mRNA sequence

ATGGATGAAAATGGAGGCATCACTGGTTTGGAAGTTGCCGAACTGAACAAAGCGGTAATGGTTGGGGATTTGCAAGAGAAGGTGAATGAAACGGTGGTGGTGGAGGATTTGGAAGAGAAGACAAACGAAACGATGGTGGTCGAGGATTTTTAA

Coding sequence (CDS)

ATGGATGAAAATGGAGGCATCACTGGTTTGGAAGTTGCCGAACTGAACAAAGCGGTAATGGTTGGGGATTTGCAAGAGAAGGTGAATGAAACGGTGGTGGTGGAGGATTTGGAAGAGAAGACAAACGAAACGATGGTGGTCGAGGATTTTTAA

Protein sequence

MDENGGITGLEVAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Homology
[Close]
BLAST of IVF0006562 vs. ExPASy TrEMBL
Match: A0A5A7U1H8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00570 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 12  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 51
           +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Sbjct: 331 IAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 369

[Close]
BLAST of IVF0006562 vs. ExPASy TrEMBL
Match: A0A5D3CLH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001020 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 12  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 51
           +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Sbjct: 372 IAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 410

[Close]
BLAST of IVF0006562 vs. NCBI nr
Match: KAA0049713.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.53e-13
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 12  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 50
           +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Sbjct: 331 IAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 369

[Close]
BLAST of IVF0006562 vs. NCBI nr
Match: TYK12162.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 7.19e-13
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0 

Query: 12  VAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 50
           +AELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF
Sbjct: 372 IAELNKAVMVGDLQEKVNETVVVEDLEEKTNETMVVEDF 410

[Close]
BLAST of IVF0006562 vs. NCBI nr
Match: KAE8646925.1 (hypothetical protein Csa_020940, partial [Cucumis sativus])

HSP 1 Score: 50.1 bits (118), Expect = 1.57e-06
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MDENGGITGLEVAELNKAVMVGDLQEKVNETVVVE--DLEEKTNETM 45
          M+ENGG+ GLEV +LN+A++  +L+EKVN+TVVV   DLEE  NE +
Sbjct: 7  MNENGGVVGLEVVKLNEAMVTRNLEEKVNKTVVVAIGDLEETVNEVI 53

The following BLAST results are available for this feature:
BLAST of IVF0006562 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006562 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1H84.6e-1097.44Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CLH64.6e-1097.44Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of IVF0006562 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049713.16.53e-1397.44ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK12162.17.19e-1397.44ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAE8646925.11.57e-0657.45hypothetical protein Csa_020940, partial [Cucumis sativus][more]
BLAST of IVF0006562 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006562.1IVF0006562.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding