IVF0006556 (gene) Melon (IVF77) v1

Overview
NameIVF0006556
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTaxadiene 5-alpha hydroxylase-like
Locationchr04: 5384511 .. 5384777 (+)
RNA-Seq ExpressionIVF0006556
SyntenyIVF0006556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

mRNA sequence

ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

Coding sequence (CDS)

ATGGTGAGAGATAGTTGGCGTCATCTACAAGCTCTTGGAATTCTAACGAAACCCCAAATGATGATGAATTCTGATGAGTGGGAGAGACGCGGCTACAGCAACACAACTAATCAAAATCACGGACGATACCAACAACTGAAGAATCGGACAATTGACTTGTTGGATGCAGTGGAGATGATGCGCGAAGACCTAGCAATGGTATGTGTTATCATCGAAGGTGTGTCGGCATGCAAGAGAGATAGTGGCGTAAAGGGAGGTCGACACTGA

Protein sequence

MVRDSWRHLQALGILTKPQMMMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRDSGVKGGRH
Homology
[Close]
BLAST of IVF0006556 vs. ExPASy TrEMBL
Match: A0A5D3BHT7 (Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00510 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.6e-11
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGVKG 86
           GV G
Sbjct: 61 GGVSG 64

[Close]
BLAST of IVF0006556 vs. ExPASy TrEMBL
Match: A0A5A7TTS5 (Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00420 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGV 84
           GV
Sbjct: 61 GGV 62

[Close]
BLAST of IVF0006556 vs. NCBI nr
Match: TYJ97748.1 (taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.15e-13
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGVKG 85
           GV G
Sbjct: 61 GGVSG 64

[Close]
BLAST of IVF0006556 vs. NCBI nr
Match: KAA0046464.1 (taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.29e-13
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 21 MMNSDEWERRGYSNTTNQNHGRYQQLKNRTIDLLDAVEMMREDLAMVCVIIEGVSACKRD 80
          M NSD+W RRG S+TTN+N  R QQLKNRT+ L +A+EMM  DLAMVCV+I  + AC+R+
Sbjct: 1  MTNSDKWGRRGNSDTTNRNRRRDQQLKNRTV-LSNAMEMMHGDLAMVCVVIGVIPACERN 60

Query: 81 SGV 83
           GV
Sbjct: 61 GGV 62

The following BLAST results are available for this feature:
BLAST of IVF0006556 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BHT75.6e-1161.54Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7TTS52.8e-1061.90Taxadiene 5-alpha hydroxylase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of IVF0006556 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97748.11.15e-1361.54taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa][more]
KAA0046464.16.29e-1361.90taxadiene 5-alpha hydroxylase-like [Cucumis melo var. makuwa][more]
BLAST of IVF0006556 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006556.2IVF0006556.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity