IVF0006549 (gene) Melon (IVF77) v1

Overview
NameIVF0006549
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr10: 8509976 .. 8510663 (-)
RNA-Seq ExpressionIVF0006549
SyntenyIVF0006549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCACTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATAATTGTCTCGGTTGTGCCACCTTGAAGATAAAGATGATGATTGTCTCAACTGTGTCACCTTGAAGATAGAGATAATGATTGTCTCGACTACGTCGCATTCAAGATGGAGATGATGATCGTCTCAGTTGCATCGCATTGAAGATAAAGATGGTGATCGTCTCGGTTGCATCGCATTGAAGATGAAGATGATGATCATCTCCGTTGCATCGTATTGAAGATGAAGATGATGATCGTCTCGGTTGCGTCACATTGAAGATAGAGATAATGATTATCTCAGCTGCGTTGTATTGAAGATGAAGATGAAGATGATCTTATCGACAGCGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGACGATCCTCTCGGCTCTAACACATGTGAGAAGATGA

mRNA sequence

ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCACTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATAATTGTCTCGATGAAGATGAAGATGATCTTATCGACAGCGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGACGATCCTCTCGGCTCTAACACATGTGAGAAGATGA

Coding sequence (CDS)

ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCACTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATAATTGTCTCGATGAAGATGAAGATGATCTTATCGACAGCGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGACGATCCTCTCGGCTCTAACACATGTGAGAAGATGA

Protein sequence

MKMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLDEDEDDLIDSGNIEDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKMTILSALTHVRR
Homology
BLAST of IVF0006549 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 31  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 65
           LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 121

BLAST of IVF0006549 vs. ExPASy TrEMBL
Match: A0A5D3D493 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00860 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-11
Identity = 59/147 (40.14%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 2   KMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPIHFNCVKDEDDDPIGCDRFEDEND 61
           + + E EDG         +S T PTY  Q +EEDDPI F+  +D   D I  D  EDE+D
Sbjct: 3   RRLSELEDG---------KSLTTPTYRQQYMEEDDPIDFDNSEDAKHDLINFDSTEDEDD 62

Query: 62  NCL-----DEDEDDLIDSGNIEDEDEDPPDCKRIKED----EDDDPLSCG--------HI 121
           + +     ++++DDLI     EDED+D   C  +K +    EDDD   C         HI
Sbjct: 63  DPIYFDYTEDEDDDLIGCDLFEDEDDDRLGCATLKMEMTIHEDDDLFYCAALKMKMMIHI 122

Query: 122 EEDGDDNPLDYNTCEKMKMTILSALTH 132
            ED D++PL  N CEKMKM IL   TH
Sbjct: 123 GEDEDEDPLSCNICEKMKMMILLVATH 140

BLAST of IVF0006549 vs. ExPASy TrEMBL
Match: A0A5A7TVT5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00160 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 78  EDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKM--TILSALTHVRR 135
           EDEDEDP DC+ I+EDEDDDPL+  HIEED DD+PLD NTCEKMKM   ILS  T VRR
Sbjct: 3   EDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61

BLAST of IVF0006549 vs. ExPASy TrEMBL
Match: A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 60/168 (35.71%), Postives = 80/168 (47.62%), Query Frame = 0

Query: 33  EEDDPIHFNCVKDEDDDPIGCDRFEDE------NDNCLD----------------EDEDD 92
           E+DD I+FN ++DEDDDPIGCDR +D+      +D+CLD                EDEDD
Sbjct: 42  EDDDSINFNRIEDEDDDPIGCDRIKDKDDDHLCDDDCLDEDKDEDDPLSCSDIEYEDEDD 101

Query: 93  LIDSGNIED------------------------------EDEDPPDCKRIKEDEDDDPLS 135
               GNIED                              ED DP  C  I++++ DDPL 
Sbjct: 102 PFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDKDDPLD 161

BLAST of IVF0006549 vs. ExPASy TrEMBL
Match: A0A5D3DSX1 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00120 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-09
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 33  EEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLDEDEDDLIDSGNIEDEDEDPPDCKRIKE 92
           E+DDP+   C KDEDDDP+ C   EDE     D+++DDLI   +IEDED+DP  C  I E
Sbjct: 93  EDDDPLDCECFKDEDDDPLNCRYIEDE-----DDEDDDLISCVHIEDEDDDPLGCDHI-E 152

Query: 93  DEDDDPLSCGHIEEDG----------DDNPLDYNTCEKMKMTILS 128
           DED++ L C  I++D           DD+P      +KMKM +LS
Sbjct: 153 DEDNNSLDCSRIKDDDSIDYERIKDEDDDPSAVVALKKMKMMVLS 191

BLAST of IVF0006549 vs. NCBI nr
Match: KAA0047572.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK14966.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.27e-15
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 78  EDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKMTI--LSALTHVRR 134
           EDEDEDP DC+ I+EDEDDDPL+  HIEED DD+PLD NTCEKMKM I  LS  T VRR
Sbjct: 3   EDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61

BLAST of IVF0006549 vs. NCBI nr
Match: TYK18365.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 6.43e-15
Identity = 62/155 (40.00%), Postives = 75/155 (48.39%), Query Frame = 0

Query: 2   KMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPI-------------HFNCVKDEDD 61
           + + E EDG         +S T PTY  Q +EEDDPI             +F+  +DEDD
Sbjct: 3   RRLSELEDG---------KSLTTPTYRQQYMEEDDPIDFDNSEDAKHDLINFDSTEDEDD 62

Query: 62  DPIGCDRFEDENDNCLDEDEDDLIDSGNIEDEDEDPPDCKRIKED----EDDDPLSCG-- 121
           DPI  D  EDE        +DDLI     EDED+D   C  +K +    EDDD   C   
Sbjct: 63  DPIYFDYTEDE--------DDDLIGCDLFEDEDDDRLGCATLKMEMTIHEDDDLFYCAAL 122

Query: 122 ------HIEEDGDDNPLDYNTCEKMKMTILSALTH 131
                 HI ED D++PL  N CEKMKM IL   TH
Sbjct: 123 KMKMMIHIGEDEDEDPLSCNICEKMKMMILLVATH 140

BLAST of IVF0006549 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 6.52e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 31  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 64
           LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 121

BLAST of IVF0006549 vs. NCBI nr
Match: XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 5.83e-14
Identity = 60/168 (35.71%), Postives = 80/168 (47.62%), Query Frame = 0

Query: 33  EEDDPIHFNCVKDEDDDPIGCDRFEDENDN------CLDED----------------EDD 92
           E+DD I+FN ++DEDDDPIGCDR +D++D+      CLDED                EDD
Sbjct: 42  EDDDSINFNRIEDEDDDPIGCDRIKDKDDDHLCDDDCLDEDKDEDDPLSCSDIEYEDEDD 101

Query: 93  LIDSGNIEDE------------------------------DEDPPDCKRIKEDEDDDPLS 134
               GNIEDE                              D DP  C  I++++ DDPL 
Sbjct: 102 PFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDKDDPLD 161

BLAST of IVF0006549 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.66e-13
Identity = 50/98 (51.02%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 32  LEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLDEDEDDLIDSGNIEDEDEDPPDCKRIK 91
           +EEDD I FN +K EDDD I  +  + E        +DD IDS +IEDED DP DC  I 
Sbjct: 14  MEEDDSIDFNHIKHEDDDSIDFNHIKHE--------DDDSIDSNHIEDEDGDPIDCNCI- 73

Query: 92  EDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKMTILSAL 129
           EDEDDDP+ C HIE D DD+ L Y   +   M IL AL
Sbjct: 74  EDEDDDPIDCDHIE-DEDDDRLGYAALKIEMMIILVAL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T1P16.6e-11100.00Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5D3D4936.6e-1140.14Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5A7TVT51.1e-1072.88Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S3CK921.5e-1035.71prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ... [more]
A0A5D3DSX18.0e-0944.76Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
KAA0047572.11.27e-1572.88phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
TYK18365.16.43e-1540.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0037362.16.52e-15100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
XP_008463661.15.83e-1435.71PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
KAA0039603.16.66e-1351.02phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006549.1IVF0006549.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding