Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACAGCCAAAAAGATCTTCGTCTCAAGTATATTGTAGCCGAGAATGTCGTCATCTCAAATATGTTGCAGTCGAGAAAGTCATTGTCTCATATATGTTGCAGCCGAGGATGTCGTCATCTCAAATATGTTGCCGTCGAGAAGGTTATCCCCTCAAATATGTTGCAGCTGAGAAGATCATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATATTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAACAGATCTTCGTCTTAAGTATATTCTAGTCGAGAATGTCGTCGTCTTAGATATGTTGCAACTGAAAAAGTCGTCGAATGTTGCAGCCGAGAATGTCGTCGTCTCAAATATGTTACCGCCGAGAAGGTCGTCCCCTCAAATATGTTGCAGCTAAGAAGATCGTCGTTCTTAAATATGTTGCAGCAGGGAAGATCATCGTCTCAAATATGTTGTAGCTAAGAATGTCGTCGTCTCATATATGTTGCAACCGAAAATGTCATCGTCTCAAATATGTTGCAGTCGAGAAGGTCGTCGTCTCAAATATGTTGTAATTGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGATGA
mRNA sequence
ATGTTACAGCCAAAAAGATCTTCGTCTCAAGTATATTGTAGCCGAGAATGTCGTCATCTCAAATATGTTGCAGTCGAGAAAGTCATTGTCTCATATATGTTGCAGCCGAGGATGTCGTCATCTCAAATATGTTGCCGTCGAGAAGGTTATCCCCTCAAATATGTTGCAGCTGAGAAGATCATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATATTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAACAGATCTTCGTCTTAAGTATATTCTAGTCGAGAATGTCGTCGTCTTAGATATGTTGCAACTGAAAAAGTCCAGGGAAGATCATCGTCTCAAATATGTTGTAGCTAAGAATGTCGTCGTCTCATATATGTTGCAACCGAAAATGTCATCGTCTCAAATATGTTGCAGTCGAGAAGGTCGTCGTCTCAAATATGTTGTAATTGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGATGA
Coding sequence (CDS)
ATGTTACAGCCAAAAAGATCTTCGTCTCAAGTATATTGTAGCCGAGAATGTCGTCATCTCAAATATGTTGCAGTCGAGAAAGTCATTGTCTCATATATGTTGCAGCCGAGGATGTCGTCATCTCAAATATGTTGCCGTCGAGAAGGTTATCCCCTCAAATATGTTGCAGCTGAGAAGATCATCGTTCTTAAATATGTTGCAGCAGAGAAGATCATCGTCTCAAATATATTACAACCAAGAAGATCGTCGTCTCAAATATGTTGCAGCCAAACAGATCTTCGTCTTAAGTATATTCTAGTCGAGAATGTCGTCGTCTTAGATATGTTGCAACTGAAAAAGTCCAGGGAAGATCATCGTCTCAAATATGTTGTAGCTAAGAATGTCGTCGTCTCATATATGTTGCAACCGAAAATGTCATCGTCTCAAATATGTTGCAGTCGAGAAGGTCGTCGTCTCAAATATGTTGTAATTGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGATGA
Protein sequence
MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKIIVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKSREDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKYVVIENVVVSNMLQPR
Homology
BLAST of IVF0006540 vs. ExPASy TrEMBL
Match:
A0A5D3DKF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00560 PE=4 SV=1)
HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61
Identity = 131/146 (89.73%), Postives = 133/146 (91.10%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI
Sbjct: 262 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 321
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKSREDHRL 120
IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS
Sbjct: 322 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKSSN---- 381
Query: 121 KYVVAKNVVVSYMLQPKMSSSQICCS 147
V A+NVVVS ML P+ SS QICCS
Sbjct: 382 --VAAENVVVSNMLPPRRSSPQICCS 401
BLAST of IVF0006540 vs. ExPASy TrEMBL
Match:
A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 5.5e-55
Identity = 123/185 (66.49%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQP+RSSSQ+ CS++ LKY+ EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKI
Sbjct: 551 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 610
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
IVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 611 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 670
Query: 121 -REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVV 168
++D LKY+VA+ VVVSYML P+MSSSQICC REGR LKYV E ++V
Sbjct: 671 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 730
BLAST of IVF0006540 vs. ExPASy TrEMBL
Match:
A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 5.5e-55
Identity = 123/185 (66.49%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQP+RSSSQ+ CS++ LKY+ EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
IVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266
Query: 121 -REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRR-----------LKYVVIENVVV 168
++D LKY+VA+ VVVSYML P+MSSSQICC REGR LKYV E ++V
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326
BLAST of IVF0006540 vs. ExPASy TrEMBL
Match:
A0A5A7VE92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001630 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 133/233 (57.08%), Postives = 148/233 (63.52%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQ +RSSSQ+ CS++ LKY+ EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI
Sbjct: 198 MLQQRRSSSQICCSQKDFCLKYIVAEKVFVSYILQPRISSSQICCRREGCPLKYVATEKI 257
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 258 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICC 317
Query: 121 ---------------------------------RE------------------------- 170
RE
Sbjct: 318 SQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRREGRPLKYVAAKKIVVLKYVAAEKIIV 377
BLAST of IVF0006540 vs. ExPASy TrEMBL
Match:
A0A5D3D4V9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001120 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 133/233 (57.08%), Postives = 148/233 (63.52%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQ +RSSSQ+ CS++ LKY+ EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI
Sbjct: 307 MLQQRRSSSQICCSQKDFCLKYIVAEKVFVSYILQPRISSSQICCRREGCPLKYVATEKI 366
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 367 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICC 426
Query: 121 ---------------------------------RE------------------------- 170
RE
Sbjct: 427 SQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRREGRPLKYVAAKKIVVLKYVAAEKIIV 486
BLAST of IVF0006540 vs. NCBI nr
Match:
KAA0051515.1 (hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa] >TYK24151.1 hypothetical protein E5676_scaffold610G00560 [Cucumis melo var. makuwa])
HSP 1 Score: 246 bits (628), Expect = 1.72e-77
Identity = 131/146 (89.73%), Postives = 133/146 (91.10%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI
Sbjct: 262 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 321
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKSREDHRL 120
IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS
Sbjct: 322 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKSSN---- 381
Query: 121 KYVVAKNVVVSYMLQPKMSSSQICCS 146
V A+NVVVS ML P+ SS QICCS
Sbjct: 382 --VAAENVVVSNMLPPRRSSPQICCS 401
BLAST of IVF0006540 vs. NCBI nr
Match:
KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])
HSP 1 Score: 225 bits (574), Expect = 4.72e-70
Identity = 123/185 (66.49%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQP+RSSSQ+ CS++ LKY+ EKV+VSY+LQPRMSSSQICCRREG PLKYVA EKI
Sbjct: 147 MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRREGRPLKYVATEKI 206
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
IVLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 207 IVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICY 266
Query: 121 -REDHRLKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKY-----------VVIENVVV 167
++D LKY+VA+ VVVSYML P+MSSSQICC REGR LKY V E ++V
Sbjct: 267 RQKDFCLKYIVAEKVVVSYMLHPRMSSSQICCRREGRPLKYIAAKKIVVLKYVAAEKIIV 326
BLAST of IVF0006540 vs. NCBI nr
Match:
KAA0064215.1 (hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (571), Expect = 1.50e-68
Identity = 133/233 (57.08%), Postives = 148/233 (63.52%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQ +RSSSQ+ CS++ LKY+ EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI
Sbjct: 198 MLQQRRSSSQICCSQKDFCLKYIVAEKVFVSYILQPRISSSQICCRREGCPLKYVATEKI 257
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 258 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICC 317
Query: 121 --------------------------------REDHR----------------------- 169
R + R
Sbjct: 318 SQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRREGRPLKYVAAKKIVVLKYVAAEKIIV 377
BLAST of IVF0006540 vs. NCBI nr
Match:
KAA0032450.1 (hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 218 bits (555), Expect = 7.09e-68
Identity = 123/187 (65.78%), Postives = 138/187 (73.80%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQPKRSSSQVYCSREC L+YV EK IVSY+LQPRMSSSQICC REG PLKYVA EKI
Sbjct: 64 MLQPKRSSSQVYCSRECCRLRYVTTEKFIVSYILQPRMSSSQICCHREGRPLKYVAVEKI 123
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D +YI+ E VVV +LQ + S
Sbjct: 124 DVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCHEYIIAEKVVVSYILQPRMSSSQICY 183
Query: 121 REDHR------------LKYVVAKNVVVSYMLQPKMSSSQICCSREGRRLKYVVIENVVV 169
R + R LKYV A+ ++VS MLQP+ SSSQICCS++ LKY+V E VVV
Sbjct: 184 RRECRPLKYVAAEKIFVLKYVAAEKIIVSNMLQPRRSSSQICCSQKYFCLKYIVGEKVVV 243
BLAST of IVF0006540 vs. NCBI nr
Match:
TYK18585.1 (hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (571), Expect = 2.04e-67
Identity = 133/233 (57.08%), Postives = 148/233 (63.52%), Query Frame = 0
Query: 1 MLQPKRSSSQVYCSRECRHLKYVAVEKVIVSYMLQPRMSSSQICCRREGYPLKYVAAEKI 60
MLQ +RSSSQ+ CS++ LKY+ EKV VSY+LQPR+SSSQICCRREG PLKYVA EKI
Sbjct: 307 MLQQRRSSSQICCSQKDFCLKYIVAEKVFVSYILQPRISSSQICCRREGCPLKYVATEKI 366
Query: 61 IVLKYVAAEKIIVSNILQPRRSSSQICCSQTDLRLKYILVENVVVLDMLQLKKS------ 120
VLKYVAAEKIIVSN+LQPRRSSSQICCSQ D LKYI+ E VVV MLQ ++S
Sbjct: 367 FVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYMLQPRRSSSQICC 426
Query: 121 --------------------------------REDHR----------------------- 169
R + R
Sbjct: 427 SQKDFCLKYIVAEKVVISYMLQPRMSSSQICCRREGRPLKYVAAKKIVVLKYVAAEKIIV 486
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DKF5 | 1.3e-61 | 89.73 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3C2C8 | 5.5e-55 | 66.49 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7UEK9 | 5.5e-55 | 66.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7VE92 | 1.2e-54 | 57.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3D4V9 | 1.2e-54 | 57.08 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051515.1 | 1.72e-77 | 89.73 | hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa] >TYK2415... | [more] |
| KAA0051981.1 | 4.72e-70 | 66.49 | hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa] | [more] |
| KAA0064215.1 | 1.50e-68 | 57.08 | hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa] | [more] |
| KAA0032450.1 | 7.09e-68 | 65.78 | hypothetical protein E6C27_scaffold999G00100 [Cucumis melo var. makuwa] | [more] |
| TYK18585.1 | 2.04e-67 | 57.08 | hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
