IVF0006536 (gene) Melon (IVF77) v1

Overview
NameIVF0006536
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 9785255 .. 9785695 (-)
RNA-Seq ExpressionIVF0006536
SyntenyIVF0006536
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

mRNA sequence

ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

Coding sequence (CDS)

ATGAAGAAATTCTTCCTGCCTATCGAGAATGCAAGAAGAAGGCAGGACCTAAAGGTCTTCAGACATAGGGATAGAGAGAATTTGAATGACGCATGGTCGATATCCAAGCGTTTGGTGAAAGCATGCCTCCATCATGGCATATCTAAATGTGTGTTGATGGAGAAATTCTACTTTCGGCTAAGTGAGGATGCTCAACAAACTGTTGATGTTGTGTTTGTAGGAGGAGTGTTGAGAAATTCCTACAACCAGACTAAAACAATGCTGGACACCATGATTAGCAATAGCCAAGAATGTAGGGATGATTGCATTAGTTCGCAGCAAGAGAATGGAGAAAACAGAGGAAGAACAGACGAGGGAATGGATAGAAACGCAATGGTGACATTACAAGGACAAGTTACTGAAATGAACAAGTTGCTAAGTCCATGGTGTTATCGAAAGTAA

Protein sequence

MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKLLSPWCYRK
Homology
BLAST of IVF0006536 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL
Sbjct: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120
           SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM
Sbjct: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120

Query: 121 DRNAMVTLQGQVTEMNKLLSPWCYRK 147
           DRNAMVTLQGQVTEMNKLLSPWCYRK
Sbjct: 121 DRNAMVTLQGQVTEMNKLLSPWCYRK 146

BLAST of IVF0006536 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           MKKFF  I+ A+RRQDL +F+ RDR+NL+DAWSI KR+VKACLHHGI+K VLME FYF L
Sbjct: 81  MKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGL 140

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 98
           S+D +Q+ D +F+GG+LR+SYNQ K MLD+M +NSQ+
Sbjct: 141 SKDTRQSADSLFIGGILRSSYNQIKAMLDSMANNSQD 177

BLAST of IVF0006536 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 0

Query: 20  FRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRN 79
           F  RDRENL D W   KR++K C HH I +CVLME+FYF LS++  Q+ ++VF GG+LR+
Sbjct: 3   FEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRS 62

Query: 80  SYNQTKTMLDTMISNSQECRDDCISSQQEN---GENRGRTDEGMDRNAMVTLQGQVTEMN 139
           SYNQ K MLDTM SNSQE RD+   S+ ++     NRGR ++G+D + MV LQGQV EMN
Sbjct: 63  SYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN 122

Query: 140 KLLS 141
            L S
Sbjct: 123 ILQS 126

BLAST of IVF0006536 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 0

Query: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
           +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR
Sbjct: 2   IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61

Query: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
           +SYNQ K  LD+M +NSQE  D    S+     +RGRT EG+D++ +V LQGQ+  MN L
Sbjct: 62  SSYNQIKATLDSMSNNSQEWDDIGFGSR-----HRGRTKEGLDKSVVVVLQGQMIAMNNL 117

Query: 139 L 140
           L
Sbjct: 122 L 117

BLAST of IVF0006536 vs. ExPASy TrEMBL
Match: A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 64/117 (54.70%), Postives = 84/117 (71.79%), Query Frame = 0

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           +KKFFL I+N RRRQD  +F+ R+ ENL+DAWS  KR++K CL  GI + VLME FYF+L
Sbjct: 125 VKKFFLLIKNVRRRQDPMLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKL 184

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTD 118
           S+D Q TV  VF GG+L++ YNQ K+ML++M  NSQE  D   SS+   GE + +TD
Sbjct: 185 SKDTQHTVGAVFAGGMLKSFYNQIKSMLNSMAGNSQEWDDSDFSSRLV-GEEKLKTD 240

BLAST of IVF0006536 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 298 bits (763), Expect = 5.52e-102
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL
Sbjct: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120
           SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM
Sbjct: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120

Query: 121 DRNAMVTLQGQVTEMNKLLSPWCYRK 146
           DRNAMVTLQGQVTEMNKLLSPWCYRK
Sbjct: 121 DRNAMVTLQGQVTEMNKLLSPWCYRK 146

BLAST of IVF0006536 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 4.27e-35
Identity = 69/125 (55.20%), Postives = 88/125 (70.40%), Query Frame = 0

Query: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
            F  RDRENL D W   KR++K C HH I +CVLME+FYF LS++  Q+ ++VF GG+LR
Sbjct: 2   TFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLR 61

Query: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGE---NRGRTDEGMDRNAMVTLQGQVTEM 138
           +SYNQ K MLDTM SNSQE RD+   S+ ++     NRGR ++G+D + MV LQGQV EM
Sbjct: 62  SSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM 121

Query: 139 NKLLS 140
           N L S
Sbjct: 122 NILQS 126

BLAST of IVF0006536 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 129 bits (323), Expect = 9.05e-35
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 0

Query: 19  VFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLR 78
           +F+ RD+EN++D WS  KRLVKAC  HGI +CV ME FYF LS+D  Q V+ +FVGG+LR
Sbjct: 2   IFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLR 61

Query: 79  NSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGMDRNAMVTLQGQVTEMNKL 138
           +SYNQ K  LD+M +NSQE  D    S+      RGRT EG+D++ +V LQGQ+  MN L
Sbjct: 62  SSYNQIKATLDSMSNNSQEWDDIGFGSRH-----RGRTKEGLDKSVVVVLQGQMIAMNNL 117

BLAST of IVF0006536 vs. NCBI nr
Match: KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 3.15e-34
Identity = 64/97 (65.98%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60
           MKKFF  I+ A+RRQDL +F+ RDR+NL+DAWSI KR+VKACLHHGI+K VLME FYF L
Sbjct: 81  MKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGL 140

Query: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97
           S+D +Q+ D +F+GG+LR+SYNQ K MLD+M +NSQ+
Sbjct: 141 SKDTRQSADSLFIGGILRSSYNQIKAMLDSMANNSQD 177

BLAST of IVF0006536 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 120 bits (300), Expect = 1.05e-31
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 38  LVKACLHHGISKCVLMEKFYFRLSEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQE 97
           ++K CLHH I  CV++E+FYF LS D QQ VD VF+GG+LR S N  KT LD M+SNSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 98  CRDDCISSQQENGENR---GRTDEGMDRNAMVTLQGQVTEMNKLL 139
            RD+   S  E+  NR   GRT++G + NAM+TLQ QVTEMNKLL
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLL 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TUE12.0e-77100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1F32.2e-2865.98Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CC263.8e-2855.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F92.7e-2654.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5D3DR172.8e-2354.70Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
KAA0046468.15.52e-102100.00hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... [more]
KAA0048713.14.27e-3555.20hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KGN44484.19.05e-3554.55hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0061983.13.15e-3465.98uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa][more]
KGN53801.11.05e-3159.05hypothetical protein Csa_014772 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006536.1IVF0006536.1mRNA