IVF0006490 (gene) Melon (IVF77) v1

Overview


Name	IVF0006490
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr06: 4736442 .. 4736879 (+)
RNA-Seq Expression	IVF0006490
Synteny	IVF0006490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

mRNA sequence

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Coding sequence (CDS)

ATGGAGCATAAAAGAATCGAAGAGAAGTTGGAAGAGTTCGACCAAGAGATCGCGGAAATACAATTAGAGTTTCATAAATTACCAACGATTGAAGAGAAGTTGCTATCAATGATGAAAAGTATTGAAAGGTTGGAAATCCAGGGGAACAAACAACAACAATTGTTGTTGAAGTATGTCGAAGGAATAATGAAGAAAAGATCGACGTTACTTAGAGGAATGGAAGAGTCATTGAGCAAGGAACAATCGATTGAGAGGATTGTCAAAGGTGGAGGAGCAATGATGAAAGGAATCAAGATAGATGAAAAGACGACAACAGTTGAAGAATACAAGAATTCGAATGATCTTATTAAGATTAAGGTCGGCATTGATTCATATTTGTGTTTGTTTGGAGCAGGTCAGTATCTTCAGGTCCATAAATTAACGGATTTTGAGAAGTAG

Protein sequence

MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKVGIDSYLCLFGAGQYLQVHKLTDFEK

Homology

[Close]

BLAST of IVF0006490 vs. ExPASy TrEMBL
Match: A0A5A7T6R2 (Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001010 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.2e-64
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE
Sbjct: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV 120
           GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV
Sbjct: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV 120

Query: 121 GIDSYLCLFGAGQYLQVHKLTD 143
           GIDSYLCLFGAG++  +  L D
Sbjct: 121 GIDSYLCLFGAGRFKNIGMLCD 142

[Close]

BLAST of IVF0006490 vs. ExPASy TrEMBL
Match: A0A5A7TVL4 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004660 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 79/139 (56.83%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 8   EKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRS 67
           +KLE+FDQEIA I++E HKLP  EE  LS  KSIERLEIQ  KQQQLLLKYVEG+M + S
Sbjct: 7   KKLEKFDQEIAGIRVELHKLPVTEEDFLSSKKSIERLEIQAEKQQQLLLKYVEGMMMEIS 66

Query: 68  TLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIK-VGIDSYL 127
           TL                      A MK IKID KT TV+E +NSND  KIK VG D   
Sbjct: 67  TL---------------------QATMKRIKIDRKTITVKEDENSNDRSKIKNVGSDPDS 124

Query: 128 CLFGAGQYLQVHKLTDFEK 146
           CLFGA +YLQ+HK TD +K
Sbjct: 127 CLFGADRYLQIHKSTDSKK 124

[Close]

BLAST of IVF0006490 vs. ExPASy TrEMBL
Match: A0A5A7UKU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00900 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-22
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNK---QQQLLLK 60
           M  KRIEEKLE FDQ+I+EI++E HKLPTIEE L S  KSIERL IQ  K   QQQLLLK
Sbjct: 1   MAQKRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEKQQQQQQLLLK 60

Query: 61  YVEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSND 115
           Y+EG++K++ST++ G+E S SK + +E +++G  A MK  K++ K + +EE +  ND
Sbjct: 61  YIEGMVKEKSTMIEGIEGSSSKGRPVESVLEGSDATMKDTKLEVKMSKIEEEEYLND 117

[Close]

BLAST of IVF0006490 vs. ExPASy TrEMBL
Match: A0A5A7T7Y2 (Exosome complex component CSL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002000 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.8e-18
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  FDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRSTLLRG 72
           FDQEI+ IQ E HKLPTIEE L+S+ KSIERL +Q  KQ QLLLKYVE + K++ST+  G
Sbjct: 2   FDQEISGIQAELHKLPTIEENLMSLAKSIERLGMQAEKQHQLLLKYVESMAKEKSTMSEG 61

Query: 73  MEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKVGIDSYLCLFGAG 132
           + ES S+  ++ + ++ G   MK I  + +TT +E  +N N                   
Sbjct: 62  VTESASQGSAMAKTIEEGSTPMKEIGSEGRTTKIEIEENLN------------------- 115

Query: 133 QYLQVHKLTDFEK 146
           +Y Q++KLTD EK
Sbjct: 122 RYFQIYKLTDSEK 115

[Close]

BLAST of IVF0006490 vs. ExPASy TrEMBL
Match: A0A5D3DHM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00650 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNK--QQQLLLKY 60
           M  KRIEEKL+  DQ+ + I++E HKL TIEE L SM KSIERL IQ  K  QQQLLLK 
Sbjct: 1   MAQKRIEEKLKPVDQDTSSIRVELHKLSTIEENLASMAKSIERLGIQAEKQHQQQLLLKC 60

Query: 61  VEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVE 108
           +EGIMK++ST++ G E S SK   I  ++ GG   ++ IK   KT  ++
Sbjct: 61  IEGIMKEKSTMIEGPEGSSSKGSRIASMMDGGNPSIQEIKTATKTCQMQ 109

[Close]

BLAST of IVF0006490 vs. NCBI nr
Match: KAA0037165.1 (histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa] >TYK13907.1 histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 251 bits (642), Expect = 4.74e-83
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60
           MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE
Sbjct: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVE 60

Query: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV 120
           GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV
Sbjct: 61  GIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKV 120

Query: 121 GIDSYLCLFGAGQYLQVHKLTD 142
           GIDSYLCLFGAG++  +  L D
Sbjct: 121 GIDSYLCLFGAGRFKNIGMLCD 142

[Close]

BLAST of IVF0006490 vs. NCBI nr
Match: KAA0045927.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 3.18e-33
Identity = 79/138 (57.25%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 9   KLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRST 68
           KLE+FDQEIA I++E HKLP  EE  LS  KSIERLEIQ  KQQQLLLKYVEG+M + ST
Sbjct: 8   KLEKFDQEIAGIRVELHKLPVTEEDFLSSKKSIERLEIQAEKQQQLLLKYVEGMMMEIST 67

Query: 69  LLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIK-VGIDSYLC 128
           L                      A MK IKID KT TV+E +NSND  KIK VG D   C
Sbjct: 68  LQ---------------------ATMKRIKIDRKTITVKEDENSNDRSKIKNVGSDPDSC 124

Query: 129 LFGAGQYLQVHKLTDFEK 145
           LFGA +YLQ+HK TD +K
Sbjct: 128 LFGADRYLQIHKSTDSKK 124

[Close]

BLAST of IVF0006490 vs. NCBI nr
Match: KAA0054161.1 (uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 3.58e-29
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQ---LLLK 60
           M  KRIEEKLE FDQ+I+EI++E HKLPTIEE L S  KSIERL IQ  KQQQ   LLLK
Sbjct: 1   MAQKRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEKQQQQQQLLLK 60

Query: 61  YVEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSND 114
           Y+EG++K++ST++ G+E S SK + +E +++G  A MK  K++ K + +EE +  ND
Sbjct: 61  YIEGMVKEKSTMIEGIEGSSSKGRPVESVLEGSDATMKDTKLEVKMSKIEEEEYLND 117

[Close]

BLAST of IVF0006490 vs. NCBI nr
Match: KAA0038326.1 (Exosome complex component CSL4 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.04e-20
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 13  FDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQQQLLLKYVEGIMKKRSTLLRG 72
           FDQEI+ IQ E HKLPTIEE L+S+ KSIERL +Q  KQ QLLLKYVE + K++ST+  G
Sbjct: 2   FDQEISGIQAELHKLPTIEENLMSLAKSIERLGMQAEKQHQLLLKYVESMAKEKSTMSEG 61

Query: 73  MEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVEEYKNSNDLIKIKVGIDSYLCLFGAG 132
           + ES S+  ++ + ++ G   MK I  + +TT +E  +N N                   
Sbjct: 62  VTESASQGSAMAKTIEEGSTPMKEIGSEGRTTKIEIEENLN------------------- 115

Query: 133 QYLQVHKLTDFEK 145
           +Y Q++KLTD EK
Sbjct: 122 RYFQIYKLTDSEK 115

[Close]

BLAST of IVF0006490 vs. NCBI nr
Match: KAA0049778.1 (uncharacterized protein E6C27_scaffold76G001330 [Cucumis melo var. makuwa] >TYK23085.1 uncharacterized protein E5676_scaffold142G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.26e-20
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MEHKRIEEKLEEFDQEIAEIQLEFHKLPTIEEKLLSMMKSIERLEIQGNKQ--QQLLLKY 60
           M  KRIEEKL+  DQ+ + I++E HKL TIEE L SM KSIERL IQ  KQ  QQLLLK 
Sbjct: 1   MAQKRIEEKLKPVDQDTSSIRVELHKLSTIEENLASMAKSIERLGIQAEKQHQQQLLLKC 60

Query: 61  VEGIMKKRSTLLRGMEESLSKEQSIERIVKGGGAMMKGIKIDEKTTTVE 107
           +EGIMK++ST++ G E S SK   I  ++ GG   ++ IK   KT  ++
Sbjct: 61  IEGIMKEKSTMIEGPEGSSSKGSRIASMMDGGNPSIQEIKTATKTCQMQ 109

The following BLAST results are available for this feature:

BLAST of IVF0006490 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6R2	7.2e-64	94.37	Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7TVL4	1.3e-25	56.83	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UKU8	6.8e-22	54.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T7Y2	7.8e-18	44.36	Exosome complex component CSL4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DHM5	2.8e-15	52.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0006490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037165.1	4.74e-83	94.37	histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa] >...	[more]
KAA0045927.1	3.18e-33	57.25	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0054161.1	3.58e-29	54.70	uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa]	[more]
KAA0038326.1	1.04e-20	44.36	Exosome complex component CSL4 [Cucumis melo var. makuwa]	[more]
KAA0049778.1	1.26e-20	52.29	uncharacterized protein E6C27_scaffold76G001330 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0006490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006490.2	IVF0006490.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity