IVF0006430 (gene) Melon (IVF77) v1

Overview


Name	IVF0006430
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transportin-3 isoform X2
Location	chr11: 7267953 .. 7268763 (+)
RNA-Seq Expression	IVF0006430
Synteny	IVF0006430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCTTCCTAACTTACTGATTCTATGCTCAATAAACTTATGATTCATTTGTTTCATGAACACTCATCGGCGCCAGAGAAGAGGGAAGAGACGTTCAGGCAGGCCAATTAATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAAGAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

mRNA sequence

CACCCTTCCTAACTTACTGATTCTATGCTCAATAAACTTATGATTCATTTGTTTCATGAACACTCATCGGCGCCAGAGAAGAGGGAAGAGACGTTCAGGCAGGCCAATTAATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAAGAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

Coding sequence (CDS)

ATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

Protein sequence

MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT

Homology

[Close]

BLAST of IVF0006430 vs. ExPASy TrEMBL
Match: A0A5D3BP61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001200 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK 60
           MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK
Sbjct: 1   MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK 60

Query: 61  IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS 120
           IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS
Sbjct: 61  IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS 120

Query: 121 SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY 180
           SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY
Sbjct: 121 SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY 180

Query: 181 SGSSEESAGLKYT 194
           SGSSEESAGLKYT
Sbjct: 181 SGSSEESAGLKYT 193

[Close]

BLAST of IVF0006430 vs. ExPASy TrEMBL
Match: A0A5A7TKC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002950 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.4e-19
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 100 QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRG 159
           Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPKLF+YSSF DPNTK+ LLRG
Sbjct: 141 QKLKLKPFPSEDNPDLLEVCSSKVQTSDSPNRLVTDTPAPKLFNYSSFMDPNTKVTLLRG 200

Query: 160 SPCHSVDSVMKKSNTELVSPYSGSSEESAGLK 192
           SPCHSV S  K+++ E+ S +S  SE S  L+
Sbjct: 201 SPCHSVVSTKKQADLEIDSSFSVRSEGSTSLR 232

[Close]

BLAST of IVF0006430 vs. ExPASy TrEMBL
Match: A0A5D3C234 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001090 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 100  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRG 159
            Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPK+F+YSSF DPNTK+ LLRG
Sbjct: 1265 QKLKLKPFPSEDNPDLLEVCSSKVQTSDSPNRLVTDTPAPKIFNYSSFMDPNTKVTLLRG 1324

Query: 160  SPCHSVDSVMKKSNTELVSPYSGSSEESAGLK 192
            SPCHSV S  K+++ E+ S +S  SE S  L+
Sbjct: 1325 SPCHSVVSTKKQADLEIDSSFSVRSEGSTSLR 1356

[Close]

BLAST of IVF0006430 vs. ExPASy TrEMBL
Match: A0A5D3DWV6 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001420 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 108 LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDS 167
           LS    +L  A  S  + DT        P APKLF+YSSF DPNTKI LL+GSPC SVDS
Sbjct: 307 LSIKEAHLAGAAQSSTK-DTTPIELRPIPSAPKLFNYSSFIDPNTKITLLQGSPCQSVDS 366

Query: 168 VMKKSNTELVSPYSGSSEESAGLKYT 194
             KKSNTE+VSP S SSEESAGLKYT
Sbjct: 367 FQKKSNTEIVSPCSVSSEESAGLKYT 391

[Close]

BLAST of IVF0006430 vs. ExPASy TrEMBL
Match: A0A5A7UWP4 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00230 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 66/167 (39.52%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 22  NSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALL 81
           NSLS  KF   G  Q S+    S + + +KG K    PKI LKH IRKQ SFDNVWTA+L
Sbjct: 557 NSLSNNKFFPRG--QVSSDFGFSNRFKNAKGSKASHVPKI-LKHSIRKQTSFDNVWTAVL 616

Query: 82  KSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKL 141
           KS+    C  K       +N + K S+S NN +LLE  SS++++     RSV    +   
Sbjct: 617 KSEFSGVCDLKNPSLDSLRNHLSKHSVSANNLDLLEVYSSRIQVPECFIRSVNVDSSS-- 676

Query: 142 FSYSSFTDPNTKIILLRGSPCHSV-DSVMKKSNTELVSPYSGSSEES 188
            S S F  P+   ++ R   C +  D    K+  E  SP S SSE+S
Sbjct: 677 -SVSIFHPPS---LIQRHLFCEAAQDDFSLKNQLEFSSPISVSSEDS 714

[Close]

BLAST of IVF0006430 vs. NCBI nr
Match: KAA0066334.1 (hypothetical protein E6C27_scaffold21G003950 [Cucumis melo var. makuwa] >TYK00945.1 hypothetical protein E5676_scaffold602G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 369 bits (946), Expect = 2.41e-128
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK 60
           MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK
Sbjct: 1   MAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPK 60

Query: 61  IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS 120
           IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS
Sbjct: 61  IPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACS 120

Query: 121 SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY 180
           SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY
Sbjct: 121 SKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPY 180

Query: 181 SGSSEESAGLKYT 193
           SGSSEESAGLKYT
Sbjct: 181 SGSSEESAGLKYT 193

[Close]

BLAST of IVF0006430 vs. NCBI nr
Match: KAA0041895.1 (uncharacterized protein E6C27_scaffold67G002950 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 4.28e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 100 QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRG 159
           Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPKLF+YSSF DPNTK+ LLRG
Sbjct: 141 QKLKLKPFPSEDNPDLLEVCSSKVQTSDSPNRLVTDTPAPKLFNYSSFMDPNTKVTLLRG 200

Query: 160 SPCHSVDSVMKKSNTELVSPYSGSSEESAGLK 191
           SPCHSV S  K+++ E+ S +S  SE S  L+
Sbjct: 201 SPCHSVVSTKKQADLEIDSSFSVRSEGSTSLR 232

[Close]

BLAST of IVF0006430 vs. NCBI nr
Match: TYK05420.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 2.61e-21
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 100  QNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRG 159
            Q L +KP  SE+NP+LLE CSSKV+     NR VT  PAPK+F+YSSF DPNTK+ LLRG
Sbjct: 1265 QKLKLKPFPSEDNPDLLEVCSSKVQTSDSPNRLVTDTPAPKIFNYSSFMDPNTKVTLLRG 1324

Query: 160  SPCHSVDSVMKKSNTELVSPYSGSSEESAGLK 191
            SPCHSV S  K+++ E+ S +S  SE S  L+
Sbjct: 1325 SPCHSVVSTKKQADLEIDSSFSVRSEGSTSLR 1356

[Close]

BLAST of IVF0006430 vs. NCBI nr
Match: TYK28317.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.14e-18
Identity = 54/86 (62.79%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 108 LSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDS 167
           LS    +L  A  S  + DT        P APKLF+YSSF DPNTKI LL+GSPC SVDS
Sbjct: 307 LSIKEAHLAGAAQSSTK-DTTPIELRPIPSAPKLFNYSSFIDPNTKITLLQGSPCQSVDS 366

Query: 168 VMKKSNTELVSPYSGSSEESAGLKYT 193
             KKSNTE+VSP S SSEESAGLKYT
Sbjct: 367 FQKKSNTEIVSPCSVSSEESAGLKYT 391

[Close]

BLAST of IVF0006430 vs. NCBI nr
Match: KAE8648438.1 (hypothetical protein Csa_008077, partial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 3.15e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 137 PAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKY 192
           PA   F+YSS TDPNTK+ LL+GSPCHSV+SV K SNTE++SPYS SSE+S GL Y
Sbjct: 23  PASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTY 78

The following BLAST results are available for this feature:

BLAST of IVF0006430 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BP61	5.4e-99	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TKC9	9.4e-19	58.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C234	1.6e-18	57.61	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWV6	5.7e-16	62.79	Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UWP4	1.6e-10	39.52	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of IVF0006430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066334.1	2.41e-128	100.00	hypothetical protein E6C27_scaffold21G003950 [Cucumis melo var. makuwa] >TYK0094...	[more]
KAA0041895.1	4.28e-23	58.70	uncharacterized protein E6C27_scaffold67G002950 [Cucumis melo var. makuwa]	[more]
TYK05420.1	2.61e-21	57.61	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK28317.1	1.14e-18	62.79	transportin-3 isoform X2 [Cucumis melo var. makuwa]	[more]
KAE8648438.1	3.15e-16	69.64	hypothetical protein Csa_008077, partial [Cucumis sativus]	[more]

BLAST of IVF0006430 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006430.1	IVF0006430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding