IVF0006401 (gene) Melon (IVF77) v1

Overview


Name	IVF0006401
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Drebrin-like
Location	chr12: 9137520 .. 9137834 (+)
RNA-Seq Expression	IVF0006401
Synteny	IVF0006401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCGTTTAAAGAGTAAGAAGACAGGGCAGGAAGCCAAGTTCTTTCCTAAAAAAGAAAAGAAGTCCAGGAGGAGGTTATTGATCACCTCACTCCAAAGGGAAAAAGAAATACTCTCTAAGGTAGTTGTCGAGAAAAGCCTCCCTTCACCATCGAAATTAACTCCAAACGCCTCAACACAAAAAGATCAGTTGAAGAAGGCAGTGAGAGAAAAAGAACGAGAAGAATTTGATGAGGACTATATCTTCGAGTTCATGGATCACTACATTCGTAAACCAATGGAGAAAGGAATTGATGATATAATCCAGTGCTAG

mRNA sequence

ATGACGCGTTTAAAGAGTAAGAAGACAGGGCAGGAAGCCAAGTTCTTTCCTAAAAAAGAAAAGAAGTCCAGGAGGAGGTTATTGATCACCTCACTCCAAAGGGAAAAAGAAATACTCTCTAAGGTAGTTGTCGAGAAAAGCCTCCCTTCACCATCGAAATTAACTCCAAACGCCTCAACACAAAAAGATCAGTTGAAGAAGGCAGTGAGAGAAAAAGAACGAGAAGAATTTGATGAGGACTATATCTTCGAGTTCATGGATCACTACATTCGTAAACCAATGGAGAAAGGAATTGATGATATAATCCAGTGCTAG

Coding sequence (CDS)

ATGACGCGTTTAAAGAGTAAGAAGACAGGGCAGGAAGCCAAGTTCTTTCCTAAAAAAGAAAAGAAGTCCAGGAGGAGGTTATTGATCACCTCACTCCAAAGGGAAAAAGAAATACTCTCTAAGGTAGTTGTCGAGAAAAGCCTCCCTTCACCATCGAAATTAACTCCAAACGCCTCAACACAAAAAGATCAGTTGAAGAAGGCAGTGAGAGAAAAAGAACGAGAAGAATTTGATGAGGACTATATCTTCGAGTTCATGGATCACTACATTCGTAAACCAATGGAGAAAGGAATTGATGATATAATCCAGTGCTAG

Protein sequence

MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC

Homology

[Close]

BLAST of IVF0006401 vs. ExPASy TrEMBL
Match: A0A5A7UCY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00370 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-47
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST 60
           MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST
Sbjct: 1   MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST 60

Query: 61  QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC 105
           QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC
Sbjct: 61  QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC 104

[Close]

BLAST of IVF0006401 vs. ExPASy TrEMBL
Match: A0A5D3DJV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00410 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 19  KEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFD 78
           K K+  + ++   L  EKEIL   V +KSLPSPSK T  AST+KD+LKK+VR+KE EE D
Sbjct: 22  KRKEILKEVIHDPLYGEKEILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVD 81

Query: 79  EDYIFEFMDHYIRKPMEKGIDDII 103
            DYIF+FM+HYI KPM+KG +D+I
Sbjct: 82  GDYIFKFMNHYIYKPMDKGFEDVI 105

[Close]

BLAST of IVF0006401 vs. ExPASy TrEMBL
Match: A0A5D3BAP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00500 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 18  KKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEF 77
           +KEK+  +  +   LQ E E+  K   E+SLPSP K  P AST+ D+LKK VRE   EE 
Sbjct: 183 EKEKEVLKETIDNPLQGETEVFPKDADERSLPSPPKSIPKASTRLDKLKKVVRE---EEV 242

Query: 78  DEDYIFEFMDHYIRKPMEKGIDDIIQC 105
           D +Y F+FMD YI KP+E+G +DI+QC
Sbjct: 243 DANYFFKFMDDYICKPLERGFEDIVQC 266

[Close]

BLAST of IVF0006401 vs. ExPASy TrEMBL
Match: A0A5A7T5Y0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00580 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 18  KKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEF 77
           +KEK+  +      LQ E E+  K   E+SLPSP K  P AST+ D+LKK VRE   EE 
Sbjct: 200 EKEKEVLKETTDNPLQGETEVFPKDADERSLPSPPKSIPKASTRLDKLKKVVRE---EEV 259

Query: 78  DEDYIFEFMDHYIRKPMEKGIDDIIQC 105
           D +Y F+FMD YI KP+E+G +DI+QC
Sbjct: 260 DANYFFKFMDDYICKPLERGFEDIVQC 283

[Close]

BLAST of IVF0006401 vs. ExPASy TrEMBL
Match: A0A5D3CJ32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001300 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 32  LQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFDEDYIFEFMDHYIR 91
           LQREKE + + V EKSLPS  K  P ASTQ D+LK+AVRE+  EE   DY+F F+D YI 
Sbjct: 9   LQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVREE--EEVSADYVFMFIDEYIC 68

Query: 92  KPMEKGIDDIIQC 105
           KP+E+G  DI QC
Sbjct: 69  KPLERGFKDIFQC 79

[Close]

BLAST of IVF0006401 vs. NCBI nr
Match: KAA0052076.1 (hypothetical protein E6C27_scaffold578G00490 [Cucumis melo var. makuwa] >TYK00691.1 hypothetical protein E5676_scaffold1371G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 6.46e-63
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST 60
           MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST
Sbjct: 1   MTRLKSKKTGQEAKFFPKKEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNAST 60

Query: 61  QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC 104
           QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC
Sbjct: 61  QKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKGIDDIIQC 104

[Close]

BLAST of IVF0006401 vs. NCBI nr
Match: KAA0051346.1 (hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867.1 hypothetical protein E5676_scaffold419G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.06e-20
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 19  KEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFD 78
           K K+  + ++   L  EKEIL   V +KSLPSPSK T  AST+KD+LKK+VR+KE EE D
Sbjct: 22  KRKEILKEVIHDPLYGEKEILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVD 81

Query: 79  EDYIFEFMDHYIRKPMEKGIDDII 102
            DYIF+FM+HYI KPM+KG +D+I
Sbjct: 82  GDYIFKFMNHYIYKPMDKGFEDVI 105

[Close]

BLAST of IVF0006401 vs. NCBI nr
Match: TYK11947.1 (hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.25e-15
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 32  LQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFDEDYIFEFMDHYIR 91
           LQREKE + + V EKSLPS  K  P ASTQ D+LK+AVRE+E  E   DY+F F+D YI 
Sbjct: 9   LQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVREEE--EVSADYVFMFIDEYIC 68

Query: 92  KPMEKGIDDIIQC 104
           KP+E+G  DI QC
Sbjct: 69  KPLERGFKDIFQC 79

[Close]

BLAST of IVF0006401 vs. NCBI nr
Match: TYJ96034.1 (hypothetical protein E5676_scaffold2612G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.80e-15
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 19  KEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFD 78
           KEK+  +  +   LQ E E+  K   E+SLPSP K  P AST+ D+LKK VRE   EE D
Sbjct: 184 KEKEVLKETIDNPLQGETEVFPKDADERSLPSPPKSIPKASTRLDKLKKVVRE---EEVD 243

Query: 79  EDYIFEFMDHYIRKPMEKGIDDIIQC 104
            +Y F+FMD YI KP+E+G +DI+QC
Sbjct: 244 ANYFFKFMDDYICKPLERGFEDIVQC 266

[Close]

BLAST of IVF0006401 vs. NCBI nr
Match: KAA0038892.1 (hypothetical protein E6C27_scaffold1170G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 2.28e-14
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 19  KEKKSRRRLLITSLQREKEILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFD 78
           KEK+  +      LQ E E+  K   E+SLPSP K  P AST+ D+LKK VRE   EE D
Sbjct: 201 KEKEVLKETTDNPLQGETEVFPKDADERSLPSPPKSIPKASTRLDKLKKVVRE---EEVD 260

Query: 79  EDYIFEFMDHYIRKPMEKGIDDIIQC 104
            +Y F+FMD YI KP+E+G +DI+QC
Sbjct: 261 ANYFFKFMDDYICKPLERGFEDIVQC 283

The following BLAST results are available for this feature:

BLAST of IVF0006401 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCY8	9.8e-47	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DJV1	2.2e-14	58.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BAP9	3.0e-11	50.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5Y0	6.6e-11	50.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CJ32	1.1e-10	58.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0006401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052076.1	6.46e-63	100.00	hypothetical protein E6C27_scaffold578G00490 [Cucumis melo var. makuwa] >TYK0069...	[more]
KAA0051346.1	2.06e-20	58.33	hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867...	[more]
TYK11947.1	1.25e-15	58.90	hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa]	[more]
TYJ96034.1	6.80e-15	51.16	hypothetical protein E5676_scaffold2612G00500 [Cucumis melo var. makuwa]	[more]
KAA0038892.1	2.28e-14	51.16	hypothetical protein E6C27_scaffold1170G00580 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006401 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006401.2	IVF0006401.2	mRNA