IVF0006354 (gene) Melon (IVF77) v1

Overview
NameIVF0006354
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr11: 12591411 .. 12593532 (-)
RNA-Seq ExpressionIVF0006354
SyntenyIVF0006354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGCGCACCAAGATATTCGTCGATGTGGGGTCAAATGTGCCTAGAGGGTACGAAGGATTTCATGTTGATTATGAGAACGATATGGAGATCCCTACTATGTACAGTAAGGGATTGGATATGTCGACTTACTACATAAAGGGCACACGATTTGGTCACACAGCTGAGGATAGGGCTGGTTTAAGCGAGTCAAAGAAAAAGAAGGGAGGCCAGTCGATAGAAACGGTAGAAATCATTCGCAATGTAATGGAATATGCAAATGACCAGTTGAAGGCCATTGCAGAATGGCCGAATGTACAATGCCAAGATGCAAGCACAACACGTTTTGAATTCGTTAGACAGTTGCAAGGAATCCTCGAACTTAGTAGGTTAGATAAGGCTCATTGTATATGTCTACTGATGCACAATGTGAATGACATGAAAGCATCCTTGGACGTCTCAGATGACATGAATTGGATTGCTCCACAGTCATTGTCCAAGATAACTCTTGAGTGCTTCTCCATTTACGTAGTTTGTTCTCTGTGCCTGCTGCTTCATATTCTTCACTATGTAGCTCTACTTTTATTATTATTGTAATTCAATTGTAGTATGAACGTTTTTTTTATTATTAATGAAGTTCTATTATGCGAAATAAATGGGGCTAAACATAACGATTTATAAACTATTTTACGGAATTAACAGGGTACGTAAGAAAAATAAGGCAATACATAGTGAAAAAAATTATTCGATTTATTAAAATAAATATATTAAATTTGTTTATTGGATATACATTAAAAAAAAATCATAACACTATCTTCATAATTCTTCCCCAAAACACATATTATGATAATACTACTATCATAATTTTTCCCCCAAACACATATTATCATAACACTAAAATCGTAATCTTTCCCCCAAACACAAATTTTCATAACACTACCTATCATAATCCTTCCCCCAAACGCATACTATCATAACACTACCTATCATAACACTTCCCCCAAATACATATTATCATAAAAATACCTATAATAATCCTTTCCTCAAATGCAGTTTATCATAACACTAGTTTTATTATAATACTAGGTTTATCATAATACCAACCCCTCATAAATCAACTCTTCCCCCAAACGGACCCTAAGGGTTAGTTTCTTCAACAAGCATGACAATGTAGATGATGAAAAAATGAAGTGACACATGTCAATTTGGATGTTAAGCATAATGGACATCTATTTTAATAATATTTATAATAGTTTCTAAATATTAACAAGCTAATTGTTTGCTTGAGCTACATATAATAATTTTTTCTATTTATTCTGAAATTTATAAAAAATTAGATTAAAAACTTTATTTTGTAATATTTGTTTTTGTCACTATCCAAACATTTTATGTGCGCCCCTTTTATCCAAACATTTTTTATAAATTTCTATGGGTTAAAATCTTATTGTGGTTCATAAGCTTTGTATCTTGTTCTATTTGGTTCCTAAACTTTTAAAAACGTCTATTTTGGTCTCCAAACTTTGACAAAAACTTAATTTGGTTCTTACTATTAGAATATCATCAACTCTTTAATGGAATGATGCTGCTGCTTCAATATTTTTATGATTAGGCTTTAGATTATTCATCATATTAATTAAATTGATAAATAACCAATAGGTCTTACTAATTTAATCTATAAATTGTTTATGCCAATAGAGAAACATAACCAACACGATTGAATGAAATAAACCTAAATTAAAATTATTAATTTTGTTATTTTTTTCTCCAAAACTTAAAACTCTCACATCTCCCTTCGGTTCCCCGCCATGTACTTATTTTTTCTTCAAATTGAAATCTTGAAGCTAATCAGAAGAACATTGAGTAGAATAAAAAAATAAAACTAATATATTGTTGTTAACATTCATGGTAAGGTAAAATAAACTAGAAAAATAAATAAGTACAACACATGTATAAAAGAAACTATATGAAATTGTTGATAAATATTCCCACAATGAATTACAACTCCAAGAAAAAGAAAAGAAAACAAAGAATAAAAAATTGGGAGGAAGAGAAAAATGCACCTCAATGAATCACAAAATATCCAAAACTTGAGGCACTAAGATTTTGTATGTTGAAGAATTTCATCTAGCATATGAGTTGA

mRNA sequence

ATGGGAGGGCGCACCAAGATATTCGTCGATGTGGGGTCAAATGTGCCTAGAGGGTACGAAGGATTTCATGTTGATTATGAGAACGATATGGAGATCCCTACTATGTACAGTAAGGGATTGGATATGTCGACTTACTACATAAAGGGCACACGATTTGGTCACACAGCTGAGGATAGGGCTGGTTTAAGCGAGTCAAAGAAAAAGAAGGGAGGCCAGTCGATAGAAACGGTAGAAATCATTCGCAATGTAATGGAATATGCAAATGACCAGTTGAAGGCCATTGCAGAATGGCCGAATGTACAATGCCAAGATGCAAGCACAACACGTTTTGAATTCGTTAGACAGTTGCAAGGAATCCTCGAACTTAGTAGTTGA

Coding sequence (CDS)

ATGGGAGGGCGCACCAAGATATTCGTCGATGTGGGGTCAAATGTGCCTAGAGGGTACGAAGGATTTCATGTTGATTATGAGAACGATATGGAGATCCCTACTATGTACAGTAAGGGATTGGATATGTCGACTTACTACATAAAGGGCACACGATTTGGTCACACAGCTGAGGATAGGGCTGGTTTAAGCGAGTCAAAGAAAAAGAAGGGAGGCCAGTCGATAGAAACGGTAGAAATCATTCGCAATGTAATGGAATATGCAAATGACCAGTTGAAGGCCATTGCAGAATGGCCGAATGTACAATGCCAAGATGCAAGCACAACACGTTTTGAATTCGTTAGACAGTTGCAAGGAATCCTCGAACTTAGTAGTTGA

Protein sequence

MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSS
Homology
[Close]
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.2e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA
Sbjct: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
           GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL
Sbjct: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120

Query: 121 ELS 124
           ELS
Sbjct: 121 ELS 123

[Close]
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 76/123 (61.79%), Postives = 89/123 (72.36%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           M G  + F DVGSN P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R 
Sbjct: 1   MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
           G S SK+K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAS    E VRQLQ I 
Sbjct: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120

Query: 121 ELS 124
           ELS
Sbjct: 121 ELS 123

[Close]
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match: A0A5A7TSD1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006250 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 77/123 (62.60%), Postives = 78/123 (63.41%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           MGGRTKIFVDVGSNVPRGYEGFHVD ENDMEIPTMYSKGLDMS YYI+G R GHT     
Sbjct: 90  MGGRTKIFVDVGSNVPRGYEGFHVDDENDMEIPTMYSKGLDMSPYYIRGRRSGHT----- 149

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
                                              EWPNVQCQDASTT FEFVRQLQGIL
Sbjct: 150 -----------------------------------EWPNVQCQDASTTCFEFVRQLQGIL 172

Query: 121 ELS 124
           ELS
Sbjct: 210 ELS 172

[Close]
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match: A0A5D3BC43 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001510 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 2   GGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAG 61
           GGR + F D+GSN P GY+ F  D   D + P+MYS+GL+MS   + GTR    +E R  
Sbjct: 110 GGRVESFADIGSNDPAGYDAFAADAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNV 169

Query: 62  LSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILE 121
            S SK+K+ G +I++  I+R  +EY N+QL  IAEWP +Q QDAS TR E +RQL+ I E
Sbjct: 170 SSRSKRKRPGHAIDSGNIVRTAIEYENEQLNHIAEWPVLQRQDASQTRQEIIRQLEAIPE 229

Query: 122 LS 124
           L+
Sbjct: 230 LT 231

[Close]
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match: A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 2   GGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAG 61
           GGRT+ F D+G N P  Y+ F  D   D + P MYS+GL+MS   + GTR    +E R  
Sbjct: 48  GGRTECFADIGLNNPAEYDAFAADAATDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNV 107

Query: 62  LSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILE 121
           LS SK+K+ G + ++ +I+R  +EY N+Q+  IAEWP +Q QDAS TR E VRQL+ I E
Sbjct: 108 LSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRIAEWPVLQRQDASQTRQEIVRQLEAIPE 167

Query: 122 LS 124
           L+
Sbjct: 168 LT 169

[Close]
BLAST of IVF0006354 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 251 bits (642), Expect = 3.00e-83
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA
Sbjct: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
           GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL
Sbjct: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120

Query: 121 ELS 123
           ELS
Sbjct: 121 ELS 123

[Close]
BLAST of IVF0006354 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 2.41e-41
Identity = 76/123 (61.79%), Postives = 89/123 (72.36%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           M G  + F DVGSN P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R 
Sbjct: 1   MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
           G S SK+K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAS    E VRQLQ I 
Sbjct: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120

Query: 121 ELS 123
           ELS
Sbjct: 121 ELS 123

[Close]
BLAST of IVF0006354 vs. NCBI nr
Match: KAA0046050.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 8.17e-40
Identity = 77/123 (62.60%), Postives = 78/123 (63.41%), Query Frame = 0 

Query: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60
           MGGRTKIFVDVGSNVPRGYEGFHVD ENDMEIPTMYSKGLDMS YYI+G R GHT     
Sbjct: 90  MGGRTKIFVDVGSNVPRGYEGFHVDDENDMEIPTMYSKGLDMSPYYIRGRRSGHT----- 149

Query: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120
                                              EWPNVQCQDASTT FEFVRQLQGIL
Sbjct: 150 -----------------------------------EWPNVQCQDASTTCFEFVRQLQGIL 172

Query: 121 ELS 123
           ELS
Sbjct: 210 ELS 172

[Close]
BLAST of IVF0006354 vs. NCBI nr
Match: KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 5.40e-29
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0 

Query: 2   GGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAG 61
           GGR + F D+GSN P GY+ F  D   D + P+MYS+GL+MS   + GTR    +E R  
Sbjct: 110 GGRVESFADIGSNDPAGYDAFAADAAPDTDFPSMYSQGLNMSPDDLMGTRIARVSERRNV 169

Query: 62  LSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILE 121
            S SK+K+ G +I++  I+R  +EY N+QL  IAEWP +Q QDAS TR E +RQL+ I E
Sbjct: 170 SSRSKRKRPGHAIDSGNIVRTAIEYENEQLNHIAEWPVLQRQDASQTRQEIIRQLEAIPE 229

Query: 122 LS 123
           L+
Sbjct: 230 LT 231

[Close]
BLAST of IVF0006354 vs. NCBI nr
Match: KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 7.44e-29
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 2   GGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAG 61
           GGRT+ F D+G N P  Y+ F  D   D + P MYS+GL+MS   + GTR    +E R  
Sbjct: 48  GGRTECFADIGLNNPAEYDAFAADAATDTDFPPMYSQGLNMSPDDLMGTRTARVSERRNV 107

Query: 62  LSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILE 121
           LS SK+K+ G + ++ +I+R  +EY N+Q+  IAEWP +Q QDAS TR E VRQL+ I E
Sbjct: 108 LSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRIAEWPVLQRQDASQTRQEIVRQLEAIPE 167

Query: 122 LS 123
           L+
Sbjct: 168 LT 169

The following BLAST results are available for this feature:
BLAST of IVF0006354 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006354 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CL796.2e-64100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4691.1e-3161.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TSD14.0e-3162.60Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BC431.4e-2348.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7R01.5e-2247.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0006354 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11924.13.00e-83100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060529.12.41e-4161.79retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0046050.18.17e-4062.60retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036791.15.40e-2948.36retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p... [more]
KAA0050216.17.44e-2947.54retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p... [more]
BLAST of IVF0006354 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006354.2IVF0006354.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane