IVF0006342 (gene) Melon (IVF77) v1

Overview
NameIVF0006342
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 16657129 .. 16657299 (+)
RNA-Seq ExpressionIVF0006342
SyntenyIVF0006342
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAATGGTGGTCACGCGACTTGGTTAGACAGGTCTTGGTAGTCGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTAAAGACTGAGCACGATGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACAAGGTCTGGACACGATTGGTGTGGCCGCATCTATTTAA

mRNA sequence

ATGGTGCAATGGTGGTCACGCGACTTGGTTAGACAGGTCTTGGTAGTCGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTAAAGACTGAGCACGATGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACAAGGTCTGGACACGATTGGTGTGGCCGCATCTATTTAA

Coding sequence (CDS)

ATGGTGCAATGGTGGTCACGCGACTTGGTTAGACAGGTCTTGGTAGTCGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTAAAGACTGAGCACGATGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACAAGGTCTGGACACGATTGGTGTGGCCGCATCTATTTAA

Protein sequence

MVQWWSRDLVRQVLVVVVFRVGDSWMVVKTEHDGGEDCTRGRWSQGLDTIGVAASI
Homology
[Close]
BLAST of IVF0006342 vs. ExPASy TrEMBL
Match: A0A5A7V7C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00790 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1   MVQWWSRDLVRQVLVVVVFRVGDSWMVVKTEHDGGEDCTRGRWSQGLDTIGVAASI 57
           MVQWWSRDLV+ +LVVVVFRVGDSWMVVKT+H GGEDCTRG WS+GLDTIGVAAS+
Sbjct: 54  MVQWWSRDLVKHILVVVVFRVGDSWMVVKTKHGGGEDCTRGWWSRGLDTIGVAASV 109

[Close]
BLAST of IVF0006342 vs. NCBI nr
Match: KAA0063488.1 (hypothetical protein E6C27_scaffold977G00790 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 2.39e-28
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 1   MVQWWSRDLVRQVLVVVVFRVGDSWMVVKTEHDGGEDCTRGRWSQGLDTIGVAASI 56
           MVQWWSRDLV+ +LVVVVFRVGDSWMVVKT+H GGEDCTRG WS+GLDTIGVAAS+
Sbjct: 54  MVQWWSRDLVKHILVVVVFRVGDSWMVVKTKHGGGEDCTRGWWSRGLDTIGVAASV 109

The following BLAST results are available for this feature:
BLAST of IVF0006342 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006342 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V7C61.4e-2085.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0006342 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063488.12.39e-2885.71hypothetical protein E6C27_scaffold977G00790 [Cucumis melo var. makuwa][more]
BLAST of IVF0006342 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006342.1IVF0006342.1mRNA