IVF0006323 (gene) Melon (IVF77) v1

Overview


Name	IVF0006323
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr07: 22805022 .. 22806408 (+)
RNA-Seq Expression	IVF0006323
Synteny	IVF0006323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTACTCTAATGGGTCGTCTTCAACTCCATTTTCCTGAATTGGGTCTTCGCCAAAACCTCACAAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGTTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATGTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAATTGGAATTATCGCTTCAGGTATTGCTTACAGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATACTTTTATGCCTTCAACTCTCTAATGGCTGGCTTTGTTATAATAATTGCATATTGAAAGTTCAACTCTATACCAATACTCGTTAGAGTTCAGTTTTATAGGGTTCGATTACAACAATGAGTAAAAAGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTTTTCCTTTACAATCACTACAATCATTTGGCATTCTAAGCAACCATTGTTATTGAGTAAAATTTCAACTTTCATTTTATCCAATTATTATAGCAATGAGTAAAAGCTTGATGGTGTTATTGTAGCTGTATTTTTGCATTCTCTTTCGTTATCAAAAGGAAAAACCTTTTGTATACCATATGAATTGGTTCCTTTGTACTCTTCGATATCTTCAGATATTTCATTTATCAAAGAAATTGAAATTGTCTTTTATATATATAAAAAAATCATTTATTTTGTTTTAGCTTTTTCCTTTACAAGAACTACAATAATTAGAAATTCTGATCTAAAAAGTTTACTGGAATGATACATCTGGATTCTCTTCTACAGCCTTTAGTATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTTAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCGGCTGATACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAAGGAAGAATTTGCTATAGTGGTGAAGAAAGACTGTTATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGACGAAGGGCAGAAACTGACGACGAAAGGTTGA

mRNA sequence

ATGAAATCTACTCTAATGGGTCGTCTTCAACTCCATTTTCCTGAATTGGGTCTTCGCCAAAACCTCACAAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGTTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATGTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAATTGGAATTATCGCTTCAGGTCTTTAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCGGCTGATACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAAGGAAGAATTTGCTATAGTGGTGAAGAAAGACTGTTATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGACGAAGGGCAGAAACTGACGACGAAAGGTTGA

Coding sequence (CDS)

ATGAAATCTACTCTAATGGGTCGTCTTCAACTCCATTTTCCTGAATTGGGTCTTCGCCAAAACCTCACAAACCGAAGCCTCCATTGTTGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGTTTGAAGAAGCCCTTAGGGAGGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATGTACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCAGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGACTGAATTACAGAGGCAAAATGAATTGGAATTATCGCTTCAGGTCTTTAAATTTATGCAAAATGAAGAATGGTACGAGCCAGATTTAAGGTTATACCATGGAATGATTATGATGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTCTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGACACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCGGCTGATACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATAAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAAGGAAGAATTTGCTATAGTGGTGAAGAAAGACTGTTATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGACGAAGGGCAGAAACTGACGACGAAAGGTTGA

Protein sequence

MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTTKG

Homology

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BLAST of IVF0006323 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 59/193 (30.57%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 49  PLGR-SRVPSNEAIQAVQSLK-LAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELE 108
           PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E  
Sbjct: 65  PLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETA 124

Query: 109 LSLQVFKFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEM 168
           L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K++K+ L PD++ + E+
Sbjct: 125 LAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEV 184

Query: 169 MGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EKFKEEF-AIVVKK 228
           +  +L+      A + Y  M+ S   P++L F++L+K L        K K++F  +  +K
Sbjct: 185 IRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEK 244

Query: 229 DCYEYLDNPQKFF 232
             Y   D P++ F
Sbjct: 245 HAY---DPPEEIF 254

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BLAST of IVF0006323 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 51/164 (31.10%), Postives = 93/164 (56.71%), Query Frame = 0


Query: 57  SNEAIQAVQSLKLAKCTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  +  S +++  I + +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E WY PD+  Y  M+MM+ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAADTYRLMIASGCTPDKLTFKILIKNL-------EKFKEEF 213
              A   Y  M  S   P  L F++++K L       EK K++F
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDF 165

[Close]

BLAST of IVF0006323 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09
Identity = 49/182 (26.92%), Postives = 87/182 (47.80%), Query Frame = 0


Query: 59  EAIQAVQSL--KLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQ 118
           EA + V+SL  + A    ++  V++  +  +     F    EL R++     L VF++MQ
Sbjct: 56  EAAELVRSLLRRTAGGKERLVPVLDRHVRVVRTEHCFLLFEELGRRDAWLQCLDVFRWMQ 115

Query: 119 NEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYL----Q 178
            + WY  D  +Y  +I +MG+   I MA  +F ++R  G +PDT  +N ++GA+L    +
Sbjct: 116 KQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDK 175

Query: 179 VDMIERAADTY-RLMIASGCTPDKLTFKILIKNLEK----------FKEEFAIVVKKDCY 224
              + +A   + ++     C P  +T+ IL++   +          FK+    VV  D Y
Sbjct: 176 TKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVY 235

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BLAST of IVF0006323 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.2e-09
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 0


Query: 37  NIICGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDAL 96
           +I CG R   + PL + R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDG 156
            EL RQ+   L++ V   ++ E  Y P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASG-----CTPDKLTFKILIKNLEKFKE 211
              D +A  +++ A +  +  E     Y LM  SG        D+   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of IVF0006323 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 40/153 (26.14%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 53  SRVPSNEAIQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  K   + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQ 172
           + ++ + WY+P++ +Y  +I+M+GK K  E A E+F ++  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VDMIERAADTYRLMIAS-GCTPDKLTFKILIKN 205
               + A      M +S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

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BLAST of IVF0006323 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.9e-133
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 1.9e-133
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.6e-132
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLHFP+LGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDC+EYLDNPQKFFNDEGQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 243
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. ExPASy TrEMBL
Match: A0A0A0KU23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.7e-119
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of IVF0006323 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.7e-108
Identity = 198/238 (83.19%), Postives = 215/238 (90.34%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLH P+LG RQNLTN +LHCCTA PPPNIICGLRKG +KPLG+SRVPS E+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDAL ELQRQNELELSLQVFKFM+NEEW
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDL LYH MI MMGKNKMIEMAEEVFH  ++DGLEPDTRAFNEMMGAYLQVDM+ERA 
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKL 239
           +TY LM ASGCTPDKLTFKILIKNLE+F+EEFA VVKK+C E+LD+P+KF  D  QKL
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKL 238

[Close]

BLAST of IVF0006323 vs. NCBI nr
Match: XP_008454079.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo] >TYK17047.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 488 bits (1257), Expect = 3.95e-174
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 242
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. NCBI nr
Match: KAA0044536.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 485 bits (1249), Expect = 6.56e-173
Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMGRLQLHFP+LGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDC+EYLDNPQKFFNDEGQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 KG 242
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. NCBI nr
Match: KGN53003.1 (hypothetical protein Csa_015115 [Cucumis sativus])

HSP 1 Score: 440 bits (1131), Expect = 7.12e-155
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

[Close]

BLAST of IVF0006323 vs. NCBI nr
Match: XP_004152311.2 (pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus])

HSP 1 Score: 440 bits (1131), Expect = 9.17e-155
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 8   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 67

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 68  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 127

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 128 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 187

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 188 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 247

[Close]

BLAST of IVF0006323 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida])

HSP 1 Score: 426 bits (1094), Expect = 3.10e-149
Identity = 210/242 (86.78%), Postives = 224/242 (92.56%), Query Frame = 0


Query: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60
           MKSTLMG LQ HFP+LGLRQ+LTN SLHCCTAAPPPNIICGLRKGL+KPLGRSRVPS EA
Sbjct: 1   MKSTLMGSLQFHFPQLGLRQDLTNPSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSIEA 60

Query: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVIN+KLSRLLKADLFDALTELQRQNELELSLQVFKF+QNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFIQNEEW 120

Query: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180
           YEPDLRLYHGMI+M GKNKMIEMAEE+FHKL+KDGLEPD RAFNEMMGAYLQVDM+ERA 
Sbjct: 121 YEPDLRLYHGMILMTGKNKMIEMAEEIFHKLKKDGLEPDIRAFNEMMGAYLQVDMVERAV 180

Query: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240
           +TY LM ASGCTPDKLTFKILIKNLEKF+EEFA VVKK+C  YLD+P+KF ND  QK T 
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLEKFREEFAAVVKKECNVYLDSPEKFLNDVEQKSTA 240

Query: 241 KG 242
           KG
Sbjct: 241 KG 242

[Close]

BLAST of IVF0006323 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-23
Identity = 67/206 (32.52%), Postives = 111/206 (53.88%), Query Frame = 0


Query: 47  KKPLGRSRVPSNEAIQAVQSLKLA----------------KCTSKMEDVINTKLSRLLKA 106
           +KPL R R+ S EAIQAVQ+LK A                  ++ ++ VI +K  RLLK 
Sbjct: 496 RKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLKF 555

Query: 107 DLFDALTELQRQNELELSLQVFKFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHK 166
           D+   L EL RQNE  L+L+VF+ ++ E WY+P +R+Y  MI +M  N ++E    ++  
Sbjct: 556 DMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSA 615

Query: 167 LRKD-GLEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNLEKFK 226
           ++ + GL  +   FN ++   L   + +   D Y  M + G  PD+ +F++L+  LE   
Sbjct: 616 MKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESNG 675

Query: 227 E-EFAIVVKKDCYEYLDNPQKFFNDE 235
           E   + +V++D +EY     +F  ++
Sbjct: 676 EMGLSAIVRQDAHEYYGESLEFIEED 701

[Close]

BLAST of IVF0006323 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-20
Identity = 59/193 (30.57%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 49  PLGR-SRVPSNEAIQAVQSLK-LAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELE 108
           PL R  ++   EA+  +  LK L +   K++  I T + RLLK D+   + EL+RQ E  
Sbjct: 65  PLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETA 124

Query: 109 LSLQVFKFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEM 168
           L++++F+ +Q +EWY+PD+ +Y  +I+ + K+K ++ A  ++ K++K+ L PD++ + E+
Sbjct: 125 LAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEV 184

Query: 169 MGAYLQVDMIERAADTYRLMIASGCTPDKLTFKILIKNL-------EKFKEEF-AIVVKK 228
           +  +L+      A + Y  M+ S   P++L F++L+K L        K K++F  +  +K
Sbjct: 185 IRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEK 244

Query: 229 DCYEYLDNPQKFF 232
             Y   D P++ F
Sbjct: 245 HAY---DPPEEIF 254

[Close]

BLAST of IVF0006323 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 51/164 (31.10%), Postives = 93/164 (56.71%), Query Frame = 0


Query: 57  SNEAIQAVQSLKLAKCTS-KMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFM 116
           S E + A + LK  +  S +++  I + +SRLLK+DL   L E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E WY PD+  Y  M+MM+ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAADTYRLMIASGCTPDKLTFKILIKNL-------EKFKEEF 213
              A   Y  M  S   P  L F++++K L       EK K++F
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDF 165

[Close]

BLAST of IVF0006323 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 0


Query: 37  NIICGLRKGLKKPLGRSRVPSNEAIQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDAL 96
           +I CG R   + PL + R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPRDN-RGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  TELQRQNELELSLQVFKFMQNEEWYEP-DLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDG 156
            EL RQ+   L++ V   ++ E  Y P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAADTYRLMIASG-----CTPDKLTFKILIKNLEKFKE 211
              D +A  +++ A +  +  E     Y LM  SG        D+   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of IVF0006323 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 40/153 (26.14%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 53  SRVPSNEAIQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVF 112
           +++ S +AI  +   +  K   + +      L R +   L + +T L+     E ++QVF
Sbjct: 82  TKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALR----WESAIQVF 141

Query: 113 KFMQNEEWYEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQ 172
           + ++ + WY+P++ +Y  +I+M+GK K  E A E+F ++  +G   +   +  ++ AY +
Sbjct: 142 ELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSR 201

Query: 173 VDMIERAADTYRLMIAS-GCTPDKLTFKILIKN 205
               + A      M +S  C PD  T+ ILIK+
Sbjct: 202 SGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

The following BLAST results are available for this feature:

BLAST of IVF0006323 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	1.1e-18	30.57	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	2.4e-16	31.10	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
A7LN87	2.8e-09	26.92	Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4...	[more]
Q9LVW6	8.2e-09	30.00	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9FKC3	1.8e-08	26.14	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]

BLAST of IVF0006323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ95	1.9e-133	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BX97	1.9e-133	100.00	pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=36...	[more]
A0A5A7TQZ8	1.6e-132	99.17	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KU23	7.7e-119	90.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1	[more]
A0A6J1IY98	2.7e-108	83.19	pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima O...	[more]

BLAST of IVF0006323 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454079.1	3.95e-174	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m...	[more]
KAA0044536.1	6.56e-173	99.17	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KGN53003.1	7.12e-155	90.87	hypothetical protein Csa_015115 [Cucumis sativus]	[more]
XP_004152311.2	9.17e-155	90.87	pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]	[more]
XP_038878176.1	3.10e-149	86.78	pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >...	[more]

BLAST of IVF0006323 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	3.5e-23	32.52	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	8.1e-20	30.57	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.7e-17	31.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	5.8e-10	30.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G48730.1	1.3e-09	26.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 127..160 e-value: 2.2E-6 score: 25.5 coord: 162..194 e-value: 9.6E-6 score: 23.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 158..205 e-value: 1.8E-8 score: 34.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 128..156 e-value: 0.0021 score: 18.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 124..158 score: 10.161182
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 159..193 score: 10.040608
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 56..223 e-value: 4.3E-43 score: 149.1
None	No IPR available	PANTHER	PTHR47594:SF5	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 2..235
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 2..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006323.1	IVF0006323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding