IVF0006309 (gene) Melon (IVF77) v1

Overview
NameIVF0006309
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-dependent RNA polymerase
Locationchr02: 1309099 .. 1322863 (+)
RNA-Seq ExpressionIVF0006309
SyntenyIVF0006309
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGGATTGTCGTATTCTATTGATGAACATACCGAACAGTGTCCGCGGGAGGATAAAAGCAACTGTTTTTCAAAATGGGTTTTACTAAAGTAAACTGATTTGCACTTGGGGAGAAGAAATTTGCATTGTTTTGCTTTAGCTTTCACAATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTCTTAGTAGCGGCCAAGGTTCTTTGTTTTCCCTTTCTAGTGCTTCTGTTTTCGCTCTTCTGAAATAAGCATGTTTTAGCATGATTTTATTTGTTTGGTCCCCAGATATTGGAATATTGTGCCAGTTGTTTATATTGATTACTTTTTGTAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGGTACATAATTTCTTTCAGTTAAATTTGTTGTTGTGCTATTTTATATTGCTCTATGATGTAAATGACAATTTCACCCCTTAATTCCTGTAGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAATGGTAAATTTGATCATCATTTCTACTGCTGTATGATTATTTTCTTTTATGCCACAACAGCATGAGGAGATAAAAGTACAAACTGCCTTTCTTTCTAAAAGAGGTGCTTCTAGCTTTCAAATGAAGTTGTGGCTTTTAATTGATCAATGAACCAACTACTAAAATGAAGTCAGAAGGTTCTGGCTTTTAATTGACTGCATGAAATTCCACTTTTAAAAATCAATGTTGTGTGTGTGTCTTGTTTGAGGGATTCCAAAATTTCATTGATAAATGTAATGAATAGATCACCTATGATAAATTACAAGGATTGCGAATTGCGTGATAAATGTTGTGGAAGTCTTGAATGTCAGACAAATCAAAGGCCATGGTCTTGCTTTCCTTCTATCTCTAAATTTTTCAAAATTTCAATTGGTTAAGGCATGGATCCCCCATGTCATTTTTCCCTCTGTTACCTTTCTTAGAACTTTGGAGTCCCCACTTCTGTGGGCCTTGGCCTCCCTCCTTATACTTCGTTTTCAATTTTAATTGTGCATTCTGAAAGAGAAGTTTCACATTTTCGTTGATCTTTATTTGTCACTACTTTCATTTTTCCTACATGATTGGAGTTATTGAGCTTGAGCTCATCCTTCATCGGAGAATCTTAGATGCAAACCAAGCACAAATCCTCAGCCAAACATTAGAGTTGATGATTTTATAAGGCTATTTTGAATAATAAACCAGCTTCCATTTCATTAAATGAACGTTTGAACGAATGGTTGGGTCTATAAAATAAAAAAAAGAAAAGCCTGAATACAACCTACTCTGAGATGTTGTGATTTTATTGGTAGATTGCATTGTTGAATAAGAGACCATGGCTACTTTATGGGAACCAGGTTGAACGGTATTGATTTTGTAATTATCAGAACCTAATTTTGATGAACGTTTTGTTTTGTGAGTCGTTAGTTGGTTAGGCTGGGAACTTGTTTCTGTGACTCATTCTGAGGAGACACTTTTCTTTTTTATGTACTCTCTAGCTCTCTTAGTCTCTCCCTCCCTATGTTGTGCAGTATGTTGACTGGGATCGTAGGAAAACACACATTTACCACTGTTATGTTGCTTTGGATGGGAGTTACAGGTTCAAGGTCAGTGTACTTCAGTAAATAATCATGGATAACATTGCTCGTATGGCACAACTACAATTTTTAACTCATTGATATCCACCTAGATAATATTCTGAAATGATAAACTATGAATCTTCGTTTTTCTATTCAGATTTTTGCAGCACAAAGCTATAATTTTTACAGTATTGATCAGAAATTAAATTTACTGCAACATGGGCTTAAGTTTCTGAGTTCAGTAGGTATACGACATGGTATCGGAACAGGTCTTGTATTCAAACATCTGTTTTCTCCCCAATTAATTTTTTTATAACTATTTGTTGGGTCTCATGTAAACTTTTAAGCCCACAAGTAATGGGTTTTATAATATTGTTAGAAGATTAAATTTACTATCAAGTTAAGCATTGGTCTTTGGTTCAATGGTGATTTTACAATGCCGACAACTACACCATGTGGATAAAAATTGAGACTTGAGAGCTCTTTTTATCATGGGGCTTTTTTGGTTTCTGCCAAAAAGCACCTAAAACTGGTAGTTTCAAGGTGCAAAGGTTGAACTTTGTCGCAAAACTGGAGGTGTGTTTAGTAGAAATAATATAGACAAATTAACCACATGGGTTGGCCTAGTAGTTAGGAGACATAGTGTCAATAAAATGGCTGAGGTTAAGAATCCATGATGGTCAACTACTTAGGAATTAATTACTTACGAGTTTCCTTGATGCCAAAATGTTATAAGGTTAGGTACGTTTCTTTGTGAGATTAGTCGAGATGTGCGTAAGCTGGCCAGACACTCACGGATATAAAAGAAAAAGTAACAATATAGATTAATTATATAGAGCTACATCATATATATATATATATCTAAAAAGGAAGGTTTCATGTAGGGTAAATATGATGTTTGATATCATTTCTTTGGCATGCAGTACATCTTCTTGCTTTATTAAGCTTAAGCTTTAACTTAACTGGTATGGAGTTTTGGCTGACACTAAATCGATGCTAATTCTTCTATAAAGGTGTTCTTTTATCTTCCTCTTTTCTCCTTTAGCATTGCCGATTGAGATGAATGGACTACATTGAAATTGATAGCCAACTTACTCAGCGCACCAACCCAAAATTCAGGAATCTTAGACATTCTCAATGCGTACAACTCATTTTTCTCCAGAGGAATGGCTTTATACCAACCCTCTATATTTTTACGTGCTATATACAACAAAAATTATTTCCAATTGTGTGAGTTGAATCTTGTCGGCAATGTCATTCACTGTTGAAGTTTTGAGTTGCAGTTTCACTATATGGTATCTTTGTCAGGGTCCATTTTTGAACAATACAAAAACTCATCTACAAAGGGTTTTAGGCGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGATAAATCTGATACGCATTTGCCAAACCATACTGGTGGTTCCTTTTATGCGTATAACAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCGTTTTTTTGGTAAGTCTTTTTGATGCTTACTAATGAATTCTTTTGTTGTGCTTGTTTCTACAGTCACGATTAAAAGTAAAAACGCATTCCAGAAAACTTTTTTCAAATTGTCATTGTTTGTTGCATCATGCATTGCGGCTTTTCTTCACGAATAATCAGATTGGGTTCAATGGTTAATTACATACATGAAAAACCAATGTGCATTACTTGGCTAGTTAAATCTATTATCAAAGACTTGGTTGTTTGTCAATATCTTTTTGTCATTGCACATGCATTAATATTACCTACTCGTGCTCTCCCTGACAATATACTGTTGTCTACAATTCAATACACATGCAATGACATCAATACATTAGTAGAATGGGCCAAGGTCTTTGAGACAAATTGCCCTTTAGCCTTTCTATGTTCGCAGTTTATGCAGTATTTTTGCTACAGTCTGCATGTCAAACTCTCATCAGACAAATGATTGAGTTTCAACATTTAACATCACTTTTTCTGCTATCACTGACTTTTTAATCATTTTCTTATGTTTTTGTATATGCACAATGGGCTATTCTTTTAATTACTATATTTGTGTTTATGGAATAGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCGACCACATCAGCTGTGAAGTGCTATTTTGTCAGAATGGAGTCAGATGCATATGTTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTATGCTGGCGATATTTCTTATATTTTTCCTAGCAACTTCTATGTTATTGTCCTGAACGTTTTTAATTAATACTTATATTTTTATTTTGTAGGTTTTCACTCATTCTGTCAAAGACCATAAAACTGAAAATTGATTTGTCTACAGTAAAAGTTCAAAGAATCGGGGATATACCTTGCAAGGTATGTTATTCTACCACTATTCCTTCTGCCTTCTGGTGGAGAGGAAGGGGTACAATTGAAAATTGTTAATCCCTCTTATACTCCATCTTTCTCATCGTTATGATTATGGACTTTCTCGCTGCAAATTCTAATTATAGCTTCTTATTTTGGTTTTTACCTTGCTGTAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACAGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGGTTTGTGATTTCATGTTAACTTATAATTAGAGAAAAAGGATAAATTTTTTGTTCCATACTTGATTTAATGTTTCAAAATTTCAATTAAATCAACCTGAATCTATAAATTAACAAGGACTTGTTTGGGTGGGAATCTAAAAACAAAAATTTGAAAACAAGGGATTCAATGAACAAAAAGTTGTTTTTTCATGTATTCATGTATGTATTTGAAAGTAGATTAAAAAATTGGATTCTAATTTGAACAATAGTTTAGAACGTGCTTGATTTGTTCACCAAAAATTGGTTGACAATAAACTATTTACTAATTTATTTATCAAATGTTATATGTTTAAAAAATTGTACAATTATTACTTTATAATATTATATCATTTATAATACATATTTTAAATTAAGAAAATGAAATAGGTTTAATTTCTAAATTTCTTTATCTTTTTTAATGTAATTTTTCCTTTTAAAGTTTAAATTTTGAAATCTTGATACAAAGAAAACATACACCGCTTGGATCACAAAATCTAAAAACACGTTTTAGAGGTAGAATCTAGGTTGGTCTGCCGAATTGATATTTGCTCAACTTAGTGAATCCGAAAACATAAAACAAAATCTGGATTAGCAATTTTTGCCGACCATTAATTTCTCTTACTGTTTTTGTTTTTGAAAAAAAAAATCAAGTAATAATCTATAAAAACAATAAATCTTATTTCAAGTGTTATGTTATTGAAACTCAGAAAGATCTCAACAATGGCAAAATAGAGTACTCTAATTATATTGTGATATCAACTCAAGTTCAACAAACCAAAATAGACTCAAAGGAAGAATACAAATGGAAAACACAGTACAGAGCTACTAAGCAATAAACCAGCTCCTTCGAGGAGGCTGGAAACCTTTCCCTAAAAGCTTCCAGCAGCTCCTTACCAAAATTAAACCTAATTCATCAATCCAAAACATTCCTTATTTATACGAAACACCAAGCCGGGTCCTCAGGTATTTCCGTCCTCTCCAACGACTACTCTCATTGTAATATTAATATCATGTGCATTTCCTTTCTTGCTCCTCCTTTTATACGTACGAAGGATTGGAGGTCTAACAGTTTGGTAATGTGCAATGCCAACCACTGAAAAAATCTCTACAAATTTATAAATTTCAACAAAGTTCAAGCTCTATGGTTCCTTTGGAATCTCCATTGTCAAGTTTTGGGCACATTGACTGTTTGAAGATTCGAATTATAATACTCTATGTGCTAGAATGCCACTGCTGATCATTAGCCTTTTTGCTTTCTCCACCACTCGTATAAGATGATCAATATAGTTGTGGATACATTGAATGTATGAAGAAGTTGAATCATAAAACTGTAAATGCTTAGAATGATGTTGCTGACTAATAGCCTCTTTGCTTTCATCTCTTGTTTAAGATCATCAATGTAGCCGTGGGTACACTGACTGTATGAAGAAGTGGAAGTGATCGTAAAACAATCAATGCCACAGCAGATAAAACACCTGTTGTATAAGAAGTAATCATAAAACCATATAAGCTGTGTAACATCTCTGAATTAATAACTCATGGTAGAGAACCCCTAATCTTATACGTCTGAGGAGGGAGGGTGAGGTGTGTCTACTAGATATCATTAAGACAACAAATAGAGCTACATCATATATATGTCTAAAGAGGTACATTGTATATATGGTGCCTTTGTGTTAGATCATCAATGTAGTAGTAGGTACAGTACTTTTGATCATTATGGGGTCGTTTGGAGCACAAAAACTATCCAAATATTGTAATACCCACCTCTTGCTACAGTAAATATTATTTAAAACTCCCCAATTAGCTACAAGAAACTATTTCAAAACCTTCATTTGCTATAGTATTTATGTATTATTTGCTACAGTTTTTACTATTTCACATTCATAATTCTTTTATTATTTTCTACGATATTTACTATTTCATTCTAAAACTAAAATAATTTACACCTCAGACATGTGTCATCATGATACAAACTAAAATAATCTACAATACCAAACACAAACTATTGTACTTCGACTATAATAACTTCGATTTATAATAACTAACTTTTTGGTTCAAACACGTCGAGTTATAAATGCCAGACTTGTATAGTATCTAGAGGTACACTTTATGTAATAGTTAGCTCCAAGGAGTTATGAAGTATAGGTTGTGAATTCTCGGGATCCACATAGTAAGGAGCTGATGAGGAGTTATAAAATTGATGATTTTAGTATTAGGACCCTCAAACTTCTTGGGTCAAACAAAGAATGGAATTTACAACTCTTTCTTCCCAACTCCTAACTCTCAACTCCTCGGGGCAAACACATTGGAAAAAATTGATTTTTGGAAATGACGCTTCCATGCTCACATAAAATCCTTTTTTCCGAAGATTAGGAGATCTCTATCCTTTTTGGCTAGAGCATAGCCTAAAAGAATATTTTTCATAGCCACAAGCTCTCACATAATAATCTAGTTTTGACCGAAACACACTGCAAATAGGCACACATCTCCATGTGTATCTTTGCAAACGTGTTACACTGCATTGTTTCAACCTTTGGACGTGAATCTAAAACAATCCATATTGTTTATTTGTCCTGGGATTTGATGTCTATTTGTTTCTTGGAATTTGTCATCTCCTTCTACGTTGTTTTCTTTGCATAATGGAGTTTTTTTTTTCCTGCTCACATTTTTTAGTGGTTATATATTTCCAAAGATGTTTATATTACATGCTATCACACCACTGTATGGCAGAGAATTCCTGCTTTTGAAGGATTTCAGAATAAGACTTTGCCACTAACACTTCCAGGACTTGAATTGCGAGAACCAGTATGTCTATCTTGATTTTCTGTTTAGTTTCTATTGAATGTGTGGAGTTTATTTTTATGTGGTCACTTACCTTTATGATTTTCTGTTTCTGTTGGAAGCCCTTGCTAATTCAGTTCCGACTTTTTTACAATGGCCTTGCTGTTAAGGGAACATTTCTAGTGAATAAACAGGTATAGTTTTCTAGTTCAAGAGCATGAATTTTATGTTTTTTCTGACATCCATCTTTCTCATGAGTTTTGTTGTAATGATTTTACTCCACGATCACTTCTGGCTTCGTGAATATGATATTGTTCTTTCAGCTTGTATGATTATCCATTTCAGTACCCAGAAGAAGTGATCATGATGCTTTGCATTCCAATATCATGTTCACGGTTACTTTTGTACTGTTCCAGAATATCCCCATGGGGTAAAAAGTCGTTTTACATAAAAATATGATCACTGGGGTTCTAAATATGTCGATAAATAATTGGTGTTTCCATTTAGAAAGCCTACTTTGGCGCTCTATCATTATTCATTCCTAGTAATTTGGGCGGAGAAAAGATTGCCATTCTTTTCTTTGTGTGGAGGATATTCATTTTTGTTTTATCTTTATTTCTTGAGAAATTGTGGTGGCAACGTCTGCAACCTGAATATCTATATTTCATTCGAAAGTGTGTTGAGTTACAGCTGCAGTATGCAACAGTGAAGTTATGTGTTGGTCATGCGGCTTATGCCAATCAGTTTTTGTATAGCTGTTTATCAATGGGTATGGCGTTTCCTGATGTCTTCCTGTTTTTTTCTAACTGTCGAATGCTGCACCATCAGTATCTTCTGTTTAGTCTGACAAATAAAGAGATAAAGAGAAGGGTCTTCATGTTTCATAACGTGAAATCGGATGATTTTATTAGTCTAATGCAATTAGAAAACTTCCCTCCTATTTGTATCAATGTGATTTTCTTATGGAATAAATGTCTCTGCTATCTTTAATTCTACTGTTTCTTGTTACTCATTGTTGGTTCACTTTAAAATTTCAGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGGTATCCAACATTTTATTTTCTTTTTCCCTATTTTGCTTTTGGCATGCTATTGGAGTTAAATGCCAATTTCCTTCTAATTTGCATTACGTACATACCAAGGGAAAAATGGAATGCTCAACTCTTGTTTCTGATGAAAGTATCTTAACTTGAGGGGGTATGGAATCTTTGGTATAGGGACCAATTATAGTGTATTAATTACTAGAGAGTTGAAATTTCTTTATATTAGTTCTAGGGACCTGATCTTCTTATGAGAGAAGATGATAATTTTGTTATTATTTTGTATTAGAAGTTATAATAGTTACTGCATCTGCAGATTTAACCATTGGAAAAGGAAATTTATGTTTTTGAGGATCCTTAAAAGAAATAAAAAAGAAAAAGGAATTTGATTCTACTTGCAAAGGATTACTATTATTGTTGTCATAATTAATTATTTGATTTTATTTTCTTTAACAAAATGCTTCTTGGGCTTTTATGTTGGTCATATCAACCAATGGTGGTTTCTAGTCTCTTTGAGGTCTTCTTGCAAGTTTCCCTGCAACGGCCTTTTACTTGTATTTACCTTCAAAGAGTTTCTGTTAATGTGGCATTTTTCTTTCTCTAATCATCTGTCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGGTATTAATCGTATTGAGCTGGTTTTTTTTCATCTCTTTCAAAATACTCTCACTTATTTATTGTTGATGCTCTCTCTCGGCCTCGGTTGATCTCTTGCAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGGCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACATGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTGTATGTATTACATGCATGATATTTCAATTAGTCTTACTTAATTCCATGGAAGCATTGAGTGCAAACGTTATAATTTGTTCACAATTCAGTTTCGTAGCTACTGGATGAGAAGTGGAATGAGGATAAATATACAAGTACAGGAGGAGAACTGATTGTCATGGTTCTCACAATAGTTAGACGTAGACCCATTCCACTTTCTTACGATGTTCAAAAGATTTAAAAAATATTATTAAAGTTCATATAAATCATAATATCTTAATGCTATTCAATCTACTGAGAAACAAACATCTGATAAGACTCATGGTAATTTACTTGTGTTACTTAAAATCCCTAGTTTTGTTTTGTTTTGTTCCCCCCCCCCCCCCCCCCCCTCGCACATGTAAATTGGTATTAACGTGTTCTATTTTCTCCCTCCAACTAGTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGGTTATTTCACATTCAAAATTCTGGCCTCAAAGTTCTATTACCTGAGTTTGGTTTCCTCAACTTACAAATGTCTATTGGCTATTAGTTCAATGGTTTCATGGATGTTCTATTTATTGGGTATGTTTTGTCATATTTTCTGCTCAGACTTTGGTTAAAAACTGTTCTGCCTTCACTTATTATGGAGTGAATGTACACATTTTAGCTTGATGTTCACGCAATCACGCATGCCTTTTAAGCTTATGAGCTATGCTTAATTAGTTCTATGGTTTTTTTGTCAGTATTTTCTATTCATGTCTTTGTTCAAACTATAATTTCTAGAAAAAAATTTATTTTCACATTCATTATAATTATTGAGTCCCTGCCTACCCATATACTGATTTCTTTATTTTCTATTTCTTCTTTGAGTTTTTTCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGGTATGTGATGTTGTATTTGTCCATTTTTTTGGTCTGTCAAAATTTTTTTGTTATTTTTTTAAGCGGGGTGGTGTGTTATTTCATACTTTGACTAAGATGGAGTTTTCCAATAATTTTTCTCTGGTATGCTCAGTTATGCAAAGAGCGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGGTCAGTTCTACCTACATAGGGTTTGCTGTCTCTTCTTTATAATAATGTGAATTGTGTGTAATACTATTTATGTTCTCCAAAGATTTCCTAGGAAACAATACACGATTCGGAATTAGTTATTAAGCAAGTCATTAACTAGGAGCCTGGGGGGTTCATCATGGTTGGTTGGCACTTATTTCTTGAAGTACCCAACATGGAACTTGTTCTAATCTGCCTTGGTAGTCACAACTGATCTGATTTCTTTTGTTCTAATACTATATTCTGATTTTTATTTTTATAAGGGAAACAAGGTGATAAAAATGGGACAGTGAGATTGAAATTCATAAATACAAATAGAAACACAAATGTATTGTTTTTTCAAAGAAATTTATAGAAGGTTGCTCATGCAGACGCTTCATCCTCTTCCAAGACTGTGTTAGGATCCCGTATATTAGAACACAGCAAAACACCTAGATAACTAGTAGGAGCCTAGGGCACTCTTCTAACCTTCAAAAAGGGGCATAATGTAAGGTACTAGATAAGAATATATTAGTATGATATTAGTAGTAAGGAGTATTAGGTTAATTAGATAGGAAGTTAGTTACATACCTAATCTTCTTGTAAATAGGGGGGTGAGTGAGGGAGGCATATGTTGAGTGGTTTAAGGCTTGGGTTCACTCAAGAGGGAGGTTCTAAGTACCTTGAACTTGATTTATCTTGTATTTCTTCATAGTTATATTTCAATATATCCAAATCTTATTTGAGTTGGGAAGAATCCTAGCACATCTCTTCAAGCATGGAACAAACACTTCCCACTCCATTAGAGAGAGCTTTCTTGTCATCTCTCTATGAAATGAGAGAAAACCATTGGTTCATCGGTAAAGAAAGTGTTTTTCCACCTGAAATGTACCTCCCTCTCCCGTGTTCTTCTTGCAACATCCCTAGATTCAAGGCTTTGTTTTGTATTGGTGTATATATATAGCATAAGGCACATTGCTCTTTGTTCTATGGTTGTTGATGTGTTTGAACGAATTAAGGGTTTTCATGTGTATTAGTTACTGAATAATTCCTTCTGTCGAGTAACATTATTTTTCTTCCCACCTGATGATAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGGTCAGTGATTTAATATCCTATAATTACCATGTTAAAGTTCACTTAACAACAAGGGAACAGATTCTCTTTCAAGGCTCCTAATGCATCTGTATTACGTTGATAATTCAGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGGTAACTTCGTAATCCAGTGATCAACAATTTCTACAAACTGATTAATTGTTGTGGTGCTTACCGGTTAAAATACCTATCTTTGTTTAATTTTAGTTCTTATATTTTCAATTGTCTAATTTTAGGCACCGTACTTTTCATAAATTTTAAATTTAGTTCATGAGAGTTATTTTTATCGAAATTGATTAAGTAATAACAAAAATTTTCAGTAAGGAAATGCACTTTGAATATATTTTCAAATTTTATAGTAAAACCACCCTACACAACAATTCCTTTTTTTTTAAAAAAAGAACAATAAACCATCATTAGAAACTAAATTTGGACTAAAATTGAACAAAGTAGAATCTACTGCATCATAAGTAAATGAGGTTGAAAAAGAAAGGGTTTGGAGATATTGGAATACTGTCATATCTTGGCTTTCTAGATCAGTAACTTAATAAAAAACATCTGTTGGTGTATCCTGATTGTTCTTTATTTTTGGGATATAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAAATTATGTAATATAATATTATAAGCACAAGTGTATATCAAGATGTAAATAATCTAATGTAAAATCTTATCAGGGAGTTCTCATATAAACGTATAATCTAACCTAAATATTTAATATGTTCTATC

mRNA sequence

ATGAGTTTGGATTGTCGTATTCTATTGATGAACATACCGAACAGTGTCCGCGGGAGGATAAAAGCAACTGTTTTTCAAAATGGAAGAAATTTGCATTGTTTTGCTTTAGCTTTCACAATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTCTTAGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAATGTATGTTGACTGGGATCGTAGGAAAACACACATTTACCACTGTTATGTTGCTTTGGATGGGAGTTACAGGTTCAAGGGTCCATTTTTGAACAATACAAAAACTCATCTACAAAGGGTTTTAGGCGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGATAAATCTGATACGCATTTGCCAAACCATACTGGTGGTTCCTTTTATGCGTATAACAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCGTTTTTTTGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCGACCACATCAGCTGTGAAGTGCTATTTTGTCAGAATGGAGTCAGATGCATATGTTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTTTTCACTCATTCTGTCAAAGACCATAAAACTGAAAATTGATTTGTCTACAGTAAAAGTTCAAAGAATCGGGGATATACCTTGCAAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACAGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGAGAATTCCTGCTTTTGAAGGATTTCAGAATAAGACTTTGCCACTAACACTTCCAGGACTTGAATTGCGAGAACCACCCTTGCTAATTCAGTTCCGACTTTTTTACAATGGCCTTGCTGTTAAGGGAACATTTCTAGTGAATAAACAGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGGCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACATGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGTTATGCAAAGAGCGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAAATTATGTAATATAATATTATAAGCACAAGTGTATATCAAGATGTAAATAATCTAATGTAAAATCTTATCAGGGAGTTCTCATATAAACGTATAATCTAACCTAAATATTTAATATGTTCTATC

Coding sequence (CDS)

ATGAGTTTGGATTGTCGTATTCTATTGATGAACATACCGAACAGTGTCCGCGGGAGGATAAAAGCAACTGTTTTTCAAAATGGAAGAAATTTGCATTGTTTTGCTTTAGCTTTCACAATGGCTGATCATTTCTTGGAAGTCTCTCTTCCACCTTCGGTTGAGCATTTTCTTCTTCAGATATGTGAGCTACATGATCAGCCACTGCCGGATGCTGAAGTGCGATGGGCGTTAGCTTCAGTGGGGGAAGTAGCTGCTCTTGATGCTCTCCATAAGATCTCCTGTAGCTCCCCTGTAAGGAACCTTAGCGGTTTTATTCTGCATATGGTTCGTAAGGATTCTTGTGCTTCTCCTCAGAACAAGATGGTTCGTGTTTCTCCTCATCAGAGTCCTTCTTCCTGTTGCCGTGTTTCTCAGCTTCAGAGTCCTTCGACTTGCTCTGTTTCTTTGCATCAAAGTCTTTCAACTTTCTCTCTTAGTAGCGGCCAAGGGCTAGGAACTGCTGAGAATGCAAGCTTTCAGCCGCCAACTCCAGAAAAGTCCGGAAGCTTTTCATCTTCGGTTTCGGACAGAGCAAGGATTTCGCAATTTGTGGCTTTGGGAGAACTTGAGTTTAGGAAGGCATTTTTATTATTGAGTTACATTGGGGGAGAAAGCCTTGAAAGGGTCACAACAGCAGAGCAAATTCAAAGTCTAAGCCAATTAGCGATGGAAAAATTTGAGGACGAAGTTTGGAAAATATTTGGTAAAAAATACATTACTAATGAAGAACGACGAATGTATGTTGACTGGGATCGTAGGAAAACACACATTTACCACTGTTATGTTGCTTTGGATGGGAGTTACAGGTTCAAGGGTCCATTTTTGAACAATACAAAAACTCATCTACAAAGGGTTTTAGGCGATGACAATGTTTTGATGGTCAAGTTTGCTGAAGATAAATCTGATACGCATTTGCCAAACCATACTGGTGGTTCCTTTTATGCGTATAACAAGATTGCTAGAGATGGCATTCTTCTTGGATTGCGTCGATACCGTTTTTTTGTTTTCAAAGATGGTGGGAAGGAGGAAAAAAAGAAGAATCCGACCACATCAGCTGTGAAGTGCTATTTTGTCAGAATGGAGTCAGATGCATATGTTGATAAGATTGAACCTTATAAATTATCAAATAGAACAGTTTTTGAAGCAAGGAGTCTTTTCATGCATGCACACATGGTGTCTAGTATAGCAAGCTACATGGCTAGGTTTTCACTCATTCTGTCAAAGACCATAAAACTGAAAATTGATTTGTCTACAGTAAAAGTTCAAAGAATCGGGGATATACCTTGCAAGGATATCTATGGCAATGTCATATATAGAGATGGAAAACCTCTTATACATACAGACGGAACAGGATTTATATCAGAGGACTTGGCTTTGGAGTGCCCTATGAATGTATTTAAAGGGCAGGCAAAGCATGATGCTGATCTTAAGAGAATTCCTGCTTTTGAAGGATTTCAGAATAAGACTTTGCCACTAACACTTCCAGGACTTGAATTGCGAGAACCACCCTTGCTAATTCAGTTCCGACTTTTTTACAATGGCCTTGCTGTTAAGGGAACATTTCTAGTGAATAAACAGCTTCCTCCTAGAACAATTCAAATCCGCGATTCTATGATCAAAGTTGAAATAGATCCAGATCTTGTAAATTTTGAAACAGAGAATTCACTGGAGTTAGTAGGGACCAGTAATCCCCCGAAGAGGACATTTCTTTCAAGAAATTTAATAGCACTCTTGAACTATGGAGGTGTTCCAAGAGAGTACTTCATGACTATCCTTGTGGATGCTTTAAAAGATGTTCAGGGTGTTTTCTCCAGTAAGCGTGCAGCTTTAAGAGTTTCCATTAACAATGGTGAAATGGATGACTTTCTGGTTGCAAGAATGATTTTAGCTGGCATTCCTCTTGATGAATCATATTTGCAATATCGGCTATCTGTGCTATTGAAGGAGGAGAAAAAGAGCTTGAAAAGTGGAAGACTTCACATGCCTGAATGTTATTATTTAATGGGGACAGTCGATCCCACCTGTACACTTGAAAGCGGCGAAGTCTGTGTTATCCTTGAAAATGGACAAATCAACGGGAAGGTTCTTGTTTATCGCAATCCTGGTCTACATTTTGGTGATATCCATGTTTTAACAGCTAAATATGTGGAGGAGTTGGTTCCTGTTGTTGGAAATGCGAAATATGCTATATTCTTTTCCAGTAAGGGTCCCCGTTCAGTAGCTGATGAAATAGCGGGTGGTGATTTTGACGGCGATATGTACTGGGTTTCCAGAAATTCGCAGTTGTTAGAGTATTTCAGACCATGTGAACCATGGAGGCCAAGTCCTTCAACGGAAGTAGTTACAAATAGAAAGCCGAAAGAATTTTCTGTCGAGGAATTGGAGAATGAGCTATTTAAACTATTCTTGTCTACTAGGTTTCAGCCAAGTTATGCAAAGAGCGTTGCAGCTGATAACTGGTTGGCATTGATGGATCAGTTTCTAATGTTGGGTGAAGAGCGTAAAGAAGAAAGAAATCGTATAAGGGCAAAGATTCTGCAGTTGATCAATATATATTATGATGCTTTAGATGCACCTAAAAAAGGTGGGAAGAAGATTGAAGTTCCAAAACACCTAAAGGCAGGAACTTTACCTCATTTCATGGAAAGGGGAAAAAATTCATATGTTTCAACTTCAATTCTTGGACAAATTTTTGACACCGTTAACATGTATCAAGAAGAAGTGCCAAACATTGAGGTTCAGAAACTTCCTTGCTTTGAAGAGGAAGTGCCCGAATATATCTTCATGAAGTGGAAGTTTCTCTATGAGTTGTACAGAAAAGACATGGTGGACGCCATGCAGCTTGATCCCGATGCCAAAAACATAGCTGCTGAAGCCACAATTAAGAAGTACAAGGAGATATTGTATGGTGCTGAAGAACTCGAGGGGAGCCCGAGGTCGAATGATGATGTATACCAGGAGGCTCTTGCAATTTATCAAGTTACATATGACCATGCCATGAGCCACAGTGTGCGCAATTGCGTCTTTGCATGGAAAGTTGCAGGTTCGGCTCTCTTCAAGCTCTATGCTATAAAACATTCTGAAAGAAGCTTTCTTTGTCTTCCTTCAGTTATGCGTGAGATTTTTAGTTAA

Protein sequence

MSLDCRILLMNIPNSVRGRIKATVFQNGRNLHCFALAFTMADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVRNLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS
Homology
[Close]
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match: O82188 (Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana OX=3702 GN=RDR5 PE=2 SV=2)

HSP 1 Score: 875.5 bits (2261), Expect = 5.9e-253
Identity = 458/902 (50.78%), Postives = 615/902 (68.18%), Query Frame = 0 

Query: 168  ENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQ 227
            E  S     P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA++
Sbjct: 103  EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADE 162

Query: 228  IQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRFK--- 287
            I+    L M ++E  VW   G+ Y   ++RRM + WD  KTH Y C VA +GSY FK   
Sbjct: 163  IRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRM-LQWDSGKTHYYQCNVAPNGSYTFKVLS 222

Query: 288  ---GPFLNNTKTHLQRVLGDDNVLMVKFA--EDKSDTHLPNHTGGSFYAYNKIARDGILL 347
               GP L +T THL +VLGDDNVL VKFA  +  S T+  +H    ++ Y  IA++GI++
Sbjct: 223  ALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMI 282

Query: 348  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 407
            GLRRY+FFVFKDGGKEEKKK+ +T  VKCYF+R +S A+ D   PY L+ ++++EAR  F
Sbjct: 283  GLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHF 342

Query: 408  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYG-NVIYRDGKPLI 467
            MH H   ++A+YMARFSLILSKT  L++D++ +   +I DI C D  G +V+ ++ KP I
Sbjct: 343  MHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCI 402

Query: 468  HTDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLL 527
            H+DGTG+ISEDLA  CP+N+FKG+      ++                      ++PPLL
Sbjct: 403  HSDGTGYISEDLARMCPLNIFKGKCLRSESIQEAC------------------YQDPPLL 462

Query: 528  IQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPP 587
            IQFR+FY+G AVKGTFL+NK+L PRT+Q+R SMIKV  DP L NF T N+LE+V TSNPP
Sbjct: 463  IQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPP 522

Query: 588  KRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVA 647
            KRT LS+NL+ALL+YGG+P E+F+ IL++ L++ + +F +KRAAL  ++N GEMDD   A
Sbjct: 523  KRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA 582

Query: 648  RMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVI 707
            +MIL GIPLDE +L+  LS+LLK EK  LK+G+L + E YYLMGTVDPT  L+  EVCVI
Sbjct: 583  QMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVI 642

Query: 708  LENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIA 767
            LE+GQI+G+VLVYRNPGLHFGDIH+L A YV+ L   VGN+K+A+FF  KGPRS+ DEIA
Sbjct: 643  LESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIA 702

Query: 768  GGDFDGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLS 827
            GGDFDGDMY++SRN +LLE F+P EPW   +P ++  + R P + S EELE ELF++FL+
Sbjct: 703  GGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLT 762

Query: 828  TRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGK 887
              F  S    +AAD+WL +MD+FL+LG++R EE+  ++ K+L+LI+IYYDALDAPKK G 
Sbjct: 763  AGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GD 822

Query: 888  KIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMY--QEEVPNIEVQKLPCFEEE 947
            K+ +P  LK    PH+MER K  + STSILG IFD V     +E  P+ E+ KLPCFE+E
Sbjct: 823  KVYLPNKLKPDIFPHYMERDK-KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDE 882

Query: 948  -VPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN 1007
             V E+   K +  Y+ YR +M  AM+ D D    +A   I++YK+  YGA   E S +S 
Sbjct: 883  PVSEFHMQKCRLWYDNYRTEMTQAMKTDKDE---SANEVIQRYKQEFYGAAGFEDSKKSL 942

Query: 1008 DDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKH-SERSFLCLPSVMRE 1056
            +++Y +ALA+Y++ YD+A+   V  C F WKVAG  L + Y  K   E+  +C PSV++E
Sbjct: 943  EELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKE 976

[Close]
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match: O82190 (Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=RDR3 PE=3 SV=2)

HSP 1 Score: 873.2 bits (2255), Expect = 2.9e-252
Identity = 491/1017 (48.28%), Postives = 654/1017 (64.31%), Query Frame = 0 

Query: 46   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 105
            E++L  SVE  L +I E H+  LP   E R  L+S+ E  AL+ L K+     ++ L G 
Sbjct: 14   EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 106  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGL 165
            I++ V+        +   R+SP +SP        +QSP T               + +  
Sbjct: 74   IMYFVKGTVTV---DGSPRLSPGESP--------VQSPRT--------------PAKKSC 133

Query: 166  GTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL-ERVT 225
              +++ S    TP               I   +ALGELEF+KAFLLLSYIGGESL E V 
Sbjct: 134  RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 193

Query: 226  TAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRF 285
            + +QI+    L M  +E  VW   G++Y + +ERR  ++ D   TH Y C+VA DGSY+F
Sbjct: 194  SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 253

Query: 286  KGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRR 345
            KG  L NT THL +VLGDDNVL VKF  DK    +  +    +  Y  IA++GI++GLRR
Sbjct: 254  KGHLLENTGTHLHKVLGDDNVLTVKF--DKV-LGVETYCNDLYSTYKGIAKNGIMVGLRR 313

Query: 346  YRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAH 405
            YRFFVFKDGGKEEKKK+ +T  VKCYF+R +S A +D   PY  + +++ EAR  FMH +
Sbjct: 314  YRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVN 373

Query: 406  MVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYG-NVIYRDGKPLIHTDG 465
             +SS+ +YM+RFSLILSKT  L++D++ +  ++I DI C D    +V+ ++GKP IH+DG
Sbjct: 374  TLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDG 433

Query: 466  TGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQFR 525
            TG+ISEDLA  CP+N+FKG++    ++         Q+K L     G   +EPPLLIQFR
Sbjct: 434  TGYISEDLARMCPVNIFKGKSMRSNNI---------QSKNLNFEGQGPCGQEPPLLIQFR 493

Query: 526  LFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTF 585
            +FYNG AVKGTFL NK+LPPRT+Q+R SMIKV  D  L N  T NSLE+V TSNPP++  
Sbjct: 494  IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 553

Query: 586  LSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMIL 645
            LSRNL+ALL+YGGVP ++F+ IL + L++ + +F S+RAA + +IN G  DD   A MIL
Sbjct: 554  LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMIL 613

Query: 646  AGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENG 705
             GIPLDE YL+ RLS LLK E+ +LK+GR  + E YY+MGTVDPT  L+  E+CVIL +G
Sbjct: 614  VGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSG 673

Query: 706  QINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDF 765
            QI+G VLVYRNPGLHFGDIHVL A YV+ L   VGNAK+A+FF  KGPRS+ DEIAGGDF
Sbjct: 674  QISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDF 733

Query: 766  DGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQ 825
            DGDMY++SRN +LLE+F+P EPW   S  +++   RKP E S EELE ELFK+FL  RF 
Sbjct: 734  DGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFC 793

Query: 826  PSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEV 885
                  +AAD WL +MD FL LG+E  +E+   +  IL+LI+IYYDALDAPKKG  K+++
Sbjct: 794  KRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGA-KVDL 853

Query: 886  PKHLKAGTLPHFMERG-KNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPE 945
            P  L+    PH+MER  K  + STSILG IFDTV+ +  EE P  E+ KL  FE+E VP+
Sbjct: 854  PPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPK 913

Query: 946  YIFMKWKFLYELYRKDMVDA-MQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDV 1005
                K+   YE YR +M  A M+ D   +N      I++YK+  YGA   E S +S +++
Sbjct: 914  SHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEEL 973

Query: 1006 YQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREI 1055
            Y +ALA+Y V YD+A+   V  C FAW VAG  L K Y  K  ++S +   SV++++
Sbjct: 974  YPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990

[Close]
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match: O82189 (Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=RDR4 PE=3 SV=2)

HSP 1 Score: 785.0 bits (2026), Expect = 1.0e-225
Identity = 450/971 (46.34%), Postives = 608/971 (62.62%), Query Frame = 0 

Query: 46   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 105
            E++L  SVE  L ++   H+   P   E R  L+S+ E  AL+ L K+     V+ L G 
Sbjct: 19   EIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGI 78

Query: 106  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGL 165
            I++ +              V+   SP      S +Q P T                G+  
Sbjct: 79   IIYFLND-----------AVTVDGSPRLWSGESPVQFPRT---------------PGKKS 138

Query: 166  GTAENASFQPPTPEKSGSF--SSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERV 225
              A  A       + S  F       +   IS  +ALGELEF+KAFLLL+Y+GG+SL  V
Sbjct: 139  CRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEV 198

Query: 226  TTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYR 285
             + ++I+    L M  +E  VW   G+      E RM ++ D  KTH Y C+VA DGSYR
Sbjct: 199  ISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESDSGKTHYYQCHVAPDGSYR 258

Query: 286  FKGPFLNNTKTHLQRVLGDDNVLMVKFAE-DKSDTHLPNHTGGSFYAYNKIARDGILLGL 345
             KG FL NT THL +VLGDDNVL V+F +  K  T+  N     +  Y +IA++GI++GL
Sbjct: 259  LKGYFLENTGTHLHKVLGDDNVLTVRFDQLPKESTYCDN----PYSKYKEIAKNGIMVGL 318

Query: 346  RRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMH 405
            RRY+FFVFKDGGK EKKK  +T  VKCYF+R  S A  D   PY LS  ++ EAR  FMH
Sbjct: 319  RRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMH 378

Query: 406  AHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGN-VIYRDGKPLIHT 465
             H + S A+YMARFSLILSKT KL++D++ + V +I DI C D   N V+ ++GKP IH+
Sbjct: 379  VHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHS 438

Query: 466  DGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQ 525
            DGTG+ISEDLA  CP+N+FKG++    +++                  G  ++EPPLLIQ
Sbjct: 439  DGTGYISEDLARMCPLNIFKGKSMRSNNIQ------------------GTCVQEPPLLIQ 498

Query: 526  FRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKR 585
             R+F +G AVKG FL+NK LPP+T+Q+R SMIKV  D +L NF T NSLE+V TSNPPKR
Sbjct: 499  IRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKR 558

Query: 586  TFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARM 645
              LS+NL+ALL+YGGVP ++F+ IL++ L+  + +F   RAA + +++ G MDD    +M
Sbjct: 559  AKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQM 618

Query: 646  ILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILE 705
            I+AGIPLDE YL++ LS LLK EK  LK+G+L + E YYLMGTVDPT  L+  EV  + +
Sbjct: 619  IMAGIPLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAK 678

Query: 706  NGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGG 765
            +      VLVYRNPGLHFGDIH+L A YV+ L   VGN+KY +FF  KGPRS+ DEIAGG
Sbjct: 679  SQD----VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGG 738

Query: 766  DFDGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 825
            DFDGDMY++SRN +LLE+++P EPW   SP +++ T R+P E S E+LE ELFK+FL T 
Sbjct: 739  DFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTG 798

Query: 826  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 885
            F PS     AAD+WLA+MD+FL LG+E  +E+  ++ K+L+L +IYYDA+DAPK  G ++
Sbjct: 799  FSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKT-GTEV 858

Query: 886  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VP 945
             +P  +K    PH+MER K ++ STSILG IFDTV+ +  E+     + KL CFE+E V 
Sbjct: 859  NLPLDVKVDLFPHYMERNK-TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVS 918

Query: 946  EYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDV 1005
            E+   K K  ++ YRK+M  AM  D D    +    I+KYK+  Y A   + S +  +++
Sbjct: 919  EFDMEKCKLWHKDYRKEMCQAMNSDDDD---SCNEVIQKYKQEFYSAAGFKESKKILEEL 927

Query: 1006 YQEALAIYQVT 1009
            Y +ALA+Y VT
Sbjct: 979  YPKALALYNVT 927

[Close]
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match: Q5QMN5 (Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR3 PE=2 SV=2)

HSP 1 Score: 761.1 bits (1964), Expect = 1.6e-218
Identity = 452/1032 (43.80%), Postives = 600/1032 (58.14%), Query Frame = 0 

Query: 73   VRWALASVGEVAALDALHKISCSSPVRNLSGFILHMVRKDSCASPQNKMVRVSPHQSPSS 132
            VR     V ++A L        +S V    G I       +  SP    + +     PS 
Sbjct: 159  VRQIARLVPQLAQLTVESPCGHTSSVSQNQGCIEVGTPTQAMVSPGLNQMALPCRCMPSG 218

Query: 133  CCRVSQLQSPSTCSVSLHQSLSTFSL----------SSGQGLGTAENASFQPPTPEKSGS 192
                 ++ SP    +S  + +ST S            +G  +      +  P  P  +  
Sbjct: 219  LQNYIEIDSPIQPMISTPRRVSTPSSVQDISRLIENMAGPSVSPPSPITAMPQNPTTTCH 278

Query: 193  FSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQSLSQLAMEKFEDE 252
             + +    A   Q +AL EL FRK F++ +Y+  E +E V + + I+SL  L+M +FE +
Sbjct: 279  TTDNALREAASPQMLALEELGFRKIFMVFAYLASEKIENVLSVDYIRSLKFLSMAQFESQ 338

Query: 253  VWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGS---YRFKGPFLNNTKTHLQRVL 312
            +W+ FG KYI   +R   +D D   T +YHC VA+ G      FKGP++ NT+THLQ+V+
Sbjct: 339  IWRTFGHKYIAASDRAKNLDSDPGMTKVYHCNVAIRGDTVVKIFKGPYIENTRTHLQKVV 398

Query: 313  GDDNVLMVKFAEDKSDTHLPNHTGGSFYA--YNKIARDGILLGLRRYRFFVFKDGGKEEK 372
            GDDNVL+VKF    SDT     T  S Y   Y+K+A DGI+LGLRRYRFFV+KDGGKEEK
Sbjct: 399  GDDNVLVVKFMGKLSDT----KTDFSTYCEHYHKVAEDGIVLGLRRYRFFVYKDGGKEEK 458

Query: 373  -------KKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIAS 432
                    KN  TS V CYFVR ES   +D  EPY LS RTV +AR LFMH     ++A 
Sbjct: 459  LKQEKIEDKNKCTSPVMCYFVRTESGWNMD--EPYILSGRTVGQARELFMHISSAPTLAK 518

Query: 433  YMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDL 492
            YMARF+LILSKTI    DLS V V+RI D PC D +GNV+++D +PLIHTDGTG +S DL
Sbjct: 519  YMARFALILSKTITWDADLSAVYVRRIKDEPCMDRHGNVVHKDQEPLIHTDGTGLVSVDL 578

Query: 493  ALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAV 552
            AL CP ++FKG+                             L+  PLL+QFRLFYNG AV
Sbjct: 579  ALNCPTSIFKGKF----------------------------LKPQPLLMQFRLFYNGSAV 638

Query: 553  KGTFLVNKQLPPRTIQIRDSMIKVEIDPDL-----VN----------------FETENSL 612
            KGT LV+++LPP TI IR SM+K+E  P+L     VN                 ++ NS 
Sbjct: 639  KGTVLVDRRLPPATILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSF 698

Query: 613  ELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINN 672
            E+V TSN P+RT  SR LI LL YGGVP EYF+ +L  A++  +        ALR++ + 
Sbjct: 699  EIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYDYEDALRIAFSY 758

Query: 673  GEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCT 732
             +M+D + ARMIL+GIPL+ESYLQ+RL  + ++E+K +K G++ + ECYYLM T DPT T
Sbjct: 759  ADMEDSMSARMILSGIPLEESYLQHRLDFMAQQERKGIKQGKIPIDECYYLMDTTDPTGT 818

Query: 733  LESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEEL-VPVVGNAKYAIFFSSK 792
            L   EVCVILENGQ +G VLVY++PGLHFGDIHVL A Y+ +L    VG AKYAI F   
Sbjct: 819  LRPNEVCVILENGQFSGDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPIS 878

Query: 793  GPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELE 852
            GPRS+ADE+A  DFDGD+YWVS+N +LLE+F+P EPW  +   +    +KP++ +  +LE
Sbjct: 879  GPRSLADEMANSDFDGDIYWVSKNPKLLEHFKPSEPWVQAIKPKKTKQKKPQDCNESKLE 938

Query: 853  NELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDA 912
              LF  FL TRF PS+A   AAD+WLA MD+ L+     + E+  I  K+L+L+++YY A
Sbjct: 939  RLLFHEFLKTRFTPSFALGTAADSWLAYMDR-LLTDSLDEIEKKLIEEKMLKLVDLYYLA 998

Query: 913  LDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQE----EVPNI 972
            LDAPK  G K+ +P  L     PHFM R   SY S+SILGQI+D     +      V  I
Sbjct: 999  LDAPKT-GNKVNIPSDLMVKQYPHFMGR-SFSYHSSSILGQIYDKAEDVESLRSCNVQPI 1058

Query: 973  EVQKLPCF-EEEVPEYIFMKWKFLYELYRKD--MVDAMQLDPDAKNIAAEATIKKYKEIL 1032
             V  LPCF E E P      W+  YE Y  D  M+    +D + +N+  +   +KYK +L
Sbjct: 1059 GVSLLPCFMEREAPPAARHLWQHRYEEYLTDSTMLYRAMVDKEERNMKFQELYEKYKHML 1118

Query: 1033 YGAEELEGSPRSNDDVYQEALAIYQVTYDHA-MSHSVRNCVFAWKVAGSALFKLYAIKHS 1053
            Y A E E + R  DDV+ EA  IYQ+ Y+ A  S+    C FAWKVAG AL   YA+K+ 
Sbjct: 1119 YDASEFEQTQRDPDDVFSEACVIYQIVYEKARWSNDASRCGFAWKVAGRALCHFYALKNE 1153

[Close]
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match: Q5QMN4 (Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR4 PE=2 SV=2)

HSP 1 Score: 744.6 bits (1921), Expect = 1.6e-213
Identity = 444/1048 (42.37%), Postives = 605/1048 (57.73%), Query Frame = 0 

Query: 79   SVGEVA-ALDALHKISCSSPVRNLSGFILH-------MVRKDSCASPQNKMVRVSPHQSP 138
            SVG +A  +  L   +  SP   +S  +L                SP +  V    H+ P
Sbjct: 144  SVGHIARVVPDLANPAVGSPYGRISSVLLQNQNCVEGYTPSRGMVSPASNQVGSPGHRMP 203

Query: 139  SSCCRVSQLQSPSTCSVSLHQSLSTFS--LSSGQGLGTAENASFQPP--------TPEKS 198
            S   R  ++ SP    VS  + +ST S      + +      S  PP         P   
Sbjct: 204  SGLQRHMEIDSPIQPIVSTPERVSTPSPVRDLSRCVENMAGPSGSPPCPIWVMPQIPPAI 263

Query: 199  GSFSSSVSDRARISQFVALGELEFRKAFLLLSYIG--------------GESLERVTTAE 258
               +++V       Q +ALGELEFRK F++ +Y+                  +E V + +
Sbjct: 264  CPDTTNVLREVVSPQMLALGELEFRKIFMIFAYLSWNKKGVKPPLSTPKSSKIEDVLSVD 323

Query: 259  QIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGS---YRF 318
             I+SL  ++M +FE  +W  FG   I++ +R   +D     + +YHC V + G      F
Sbjct: 324  SIRSLKSMSMAQFESRIWSTFGHDNISSSDRAKNLDSGPGMSKVYHCNVEIRGGTVVKIF 383

Query: 319  KGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRR 378
            KGP++ N +THLQ+VLGDDNVL+VKF E  SDT     T      Y+K+A +GI+LGLR 
Sbjct: 384  KGPYIENRRTHLQKVLGDDNVLVVKFMEISSDTETDLST--YLEHYHKVAEEGIVLGLRC 443

Query: 379  YRFFVFKDGGKEEKKKNPT--------TSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEA 438
            YRFF++KDGGKE K K           TS+V+CYFVR ES   +D  EPY LS RT+ +A
Sbjct: 444  YRFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTESGWNMD--EPYILSGRTIGQA 503

Query: 439  RSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGK 498
            R LFMH   V ++A YM RF+LI+SKTI L +DLS V V+ I D PC D +G  ++RDG+
Sbjct: 504  RDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRDGE 563

Query: 499  PLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFE--GFQNKTLPLTLPGLELR 558
             LIHTDGTG ISEDLA +C  +  KG+     D+    A +  G  N T           
Sbjct: 564  RLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVDCAASKLMGSNNTT----------- 623

Query: 559  EPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSL---- 618
            E PLLIQ RLFYNG AVKGT LV+K+LPPRTI IR SM+K++  P+L   ++ NSL    
Sbjct: 624  EYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVS 683

Query: 619  -----------------ELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDV 678
                             E+V TSN   RTF S NLIALL+YGGVP E+FM +L  A+++ 
Sbjct: 684  ARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEA 743

Query: 679  QGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRL 738
                     AL ++ N  +M+D + ARMIL+GIPL+ESYLQ RL  L   E+K +K+G++
Sbjct: 744  DNARFDYAGALNIAFNYADMEDSMPARMILSGIPLEESYLQSRLDFLSLLERKGIKNGKI 803

Query: 739  HMPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEEL 798
             + +CYYLMGT DPT  L   EVCVIL+ GQ++G VLVY+ PGLH GDIHVL A Y  ++
Sbjct: 804  PIDDCYYLMGTADPTGKLGPNEVCVILDYGQVSGDVLVYKYPGLHPGDIHVLKATYSSDI 863

Query: 799  VPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTE 858
              VVGN+K+AI F + G RS+ADE+A  DFDGD+YWVS N +LLE+F+P +PW P+ +  
Sbjct: 864  EKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPN 923

Query: 859  VVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERN 918
                + P++F+  ELE  LF  FL TRF PSYA++ AA NWL  MD+ L +  + + E+ 
Sbjct: 924  GTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLD-ESEKK 983

Query: 919  RIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFD 978
             I  K+L+L+++YY ALDAPK  G K+ +P+ L     PHFM+R   SY S+SILG+I+D
Sbjct: 984  LIEKKMLKLVDLYYLALDAPKM-GNKVNIPRDLMVKQYPHFMDRSP-SYHSSSILGKIYD 1043

Query: 979  TVN----MYQEEVPNIEVQKLPCF-EEEVPEYIFMKWKFLYELYRKD--MVDAMQLDPDA 1038
                   +  + V    +  LPCF E +VP  I   W+  Y  Y  D  ++ A + D + 
Sbjct: 1044 KAGDPKPLRSDNVQPTSISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEE 1103

Query: 1039 KNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMS-HSVRNCVFAW 1053
            K I  +   +KYK +LYGA E E +PR  DDV+ EA AIYQ+ Y+ A S ++V  C FAW
Sbjct: 1104 KKIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAW 1163

[Close]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match: A0A5D3CF42 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003000 PE=3 SV=1)

HSP 1 Score: 2038.1 bits (5279), Expect = 0.0e+00
Identity = 1017/1017 (100.00%), Postives = 1017/1017 (100.00%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 519
            TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 520  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 579
            QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 580  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 640  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 699
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 700  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 759
            ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 760  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 819
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

Query: 820  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 879
            FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI
Sbjct: 781  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 840

Query: 880  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 939
            EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY
Sbjct: 841  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 900

Query: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 999
            IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ
Sbjct: 901  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 960

Query: 1000 EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1057
            EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS
Sbjct: 961  EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1017

[Close]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match: A0A1S3BPE5 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1)

HSP 1 Score: 2030.0 bits (5258), Expect = 0.0e+00
Identity = 1012/1017 (99.51%), Postives = 1015/1017 (99.80%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+YVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFY YNKIARDGILL
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 519
            TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 520  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 579
            QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 580  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 640  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 699
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 700  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 759
            ENGQINGKVLVYRNPGLH GDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHLGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 760  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 819
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

Query: 820  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 879
            FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI
Sbjct: 781  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 840

Query: 880  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 939
            EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY
Sbjct: 841  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 900

Query: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 999
            IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ
Sbjct: 901  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 960

Query: 1000 EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1057
            EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS
Sbjct: 961  EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1017

[Close]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match: A0A1S4DYX6 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1)

HSP 1 Score: 2015.0 bits (5219), Expect = 0.0e+00
Identity = 1012/1045 (96.84%), Postives = 1015/1045 (97.13%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+YVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFK----------------------------GPFLNNTKTHLQRVLGDDNVLMVKFAE 339
            SYRFK                            GPFLNNTKTHLQRVLGDDNVLMVKFAE
Sbjct: 241  SYRFKIFAAQSYNFYSVDQKLNLLQHGLKFLSSGPFLNNTKTHLQRVLGDDNVLMVKFAE 300

Query: 340  DKSDTHLPNHTGGSFYAYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 399
            DKSDTHLPNHTGGSFY YNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV
Sbjct: 301  DKSDTHLPNHTGGSFYVYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 360

Query: 400  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 459
            RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST
Sbjct: 361  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 420

Query: 460  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 519
            VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR
Sbjct: 421  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 480

Query: 520  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 579
            IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM
Sbjct: 481  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 540

Query: 580  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 639
            IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD
Sbjct: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600

Query: 640  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 699
            VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR
Sbjct: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660

Query: 700  LHMPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEE 759
            LH+PECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLH GDIHVLTAKYVEE
Sbjct: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHLGDIHVLTAKYVEE 720

Query: 760  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 819
            LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST
Sbjct: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 780

Query: 820  EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER 879
            EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER
Sbjct: 781  EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER 840

Query: 880  NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF 939
            NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF
Sbjct: 841  NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF 900

Query: 940  DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE 999
            DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE
Sbjct: 901  DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE 960

Query: 1000 ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL 1057
            ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL
Sbjct: 961  ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL 1020

[Close]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match: A0A0A0LYP8 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G574860 PE=3 SV=1)

HSP 1 Score: 1977.6 bits (5122), Expect = 0.0e+00
Identity = 1000/1070 (93.46%), Postives = 1019/1070 (95.23%), Query Frame = 0 

Query: 1    MSLDCRILLMNIPNSVRGRIKATVFQNG-----------RNLHCFALAFTMADHFLEVSL 60
            M L CRILLMNI NSVRGRIK TVFQNG           RNLHC A AF MADHFLEVSL
Sbjct: 1    MRLHCRILLMNIRNSVRGRIKGTVFQNGFYRYADLLLRRRNLHCSASAFAMADHFLEVSL 60

Query: 61   PPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVRNLSGFILHMV 120
            PPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VRNLSGFILH+V
Sbjct: 61   PPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VRNLSGFILHLV 120

Query: 121  RKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGLGTAEN 180
            RKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFS+ SGQGLGTAEN
Sbjct: 121  RKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGTAEN 180

Query: 181  ASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQ 240
            AS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESLERVTTA+QIQ
Sbjct: 181  ASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTADQIQ 240

Query: 241  SLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRFKGPFLN 300
            SLSQL MEKFEDEVWKIFGKKY+TNEERR+YVDWDRRKTHIYHC+VALDGS RFKGPFLN
Sbjct: 241  SLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDGSCRFKGPFLN 300

Query: 301  NTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRRYRFFVF 360
            NTKTHLQRVLGDDNVLMVKFAEDKSDT L NH+GGSFYAY+KIARDGILLGLRRY FFVF
Sbjct: 301  NTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVF 360

Query: 361  KDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIA 420
            KDGGKEEKKKNPTTSAVKCYFVRMESDAY+DKIEPYKLSNRTVFEARSLFMHAHMVSSIA
Sbjct: 361  KDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIA 420

Query: 421  SYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED 480
            SYMARFSLILSKTI LKIDLSTV VQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED
Sbjct: 421  SYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED 480

Query: 481  LALECPMNVFKGQAKHDADLK----RIPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFY 540
            LALECPMNVFKGQAKHDADLK    RIPAFEGFQNKTL LTLPGLELREPPLLIQFRLFY
Sbjct: 481  LALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFY 540

Query: 541  NGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSR 600
            NGLAVKGTFL+NKQLPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTSNPPKRTFLSR
Sbjct: 541  NGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSR 600

Query: 601  NLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI 660
            NLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI
Sbjct: 601  NLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI 660

Query: 661  PLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENGQIN 720
            PLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPT TLESGEVCVILENGQIN
Sbjct: 661  PLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILENGQIN 720

Query: 721  GKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD 780
            GKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD
Sbjct: 721  GKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD 780

Query: 781  MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYA 840
            MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLFLSTRFQPSYA
Sbjct: 781  MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYA 840

Query: 841  KSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHL 900
            KSVAADNWLALMDQFLMLGEERKEERN IRAKILQLINIYYDALDAPKKGGKKIEVPKHL
Sbjct: 841  KSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHL 900

Query: 901  KAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWK 960
            KAGTLPHFMERGKNSYVSTSILGQIFDT NMYQEEVPNIEVQKLPCFEEE+PEYIFMKWK
Sbjct: 901  KAGTLPHFMERGKNSYVSTSILGQIFDTANMYQEEVPNIEVQKLPCFEEELPEYIFMKWK 960

Query: 961  FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIY 1020
            FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN++VYQEALAIY
Sbjct: 961  FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIY 1020

Query: 1021 QVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIF 1056
            QVTYDHAMS SVRNC FAWKVAGSALFKLYAIKHSERSF CLPSVMREIF
Sbjct: 1021 QVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREIF 1069

[Close]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match: A0A6J1CU26 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111014566 PE=3 SV=1)

HSP 1 Score: 1711.0 bits (4430), Expect = 0.0e+00
Identity = 867/1017 (85.25%), Postives = 922/1017 (90.66%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MAD F EV LPPSVE  LL+IC   +QP PDA+VR ALAS+GE AALD LHKIS S  VR
Sbjct: 1    MADQFQEVPLPPSVEQLLLEICMQQNQPPPDAKVRLALASLGEEAALDTLHKIS-SRAVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            +L GFILHMVR D C +PQ KMV VSPHQSPSS   VS  QSPSTCSVS HQS ST  + 
Sbjct: 61   SLGGFILHMVRNDPC-TPQKKMVWVSPHQSPSS-SGVSPFQSPSTCSVSPHQSPSTCRVY 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            S QGLGT E  SFQPPT EKSGSFSSSVSDRA I QFVALGELEFRKAFL+LSYIGGESL
Sbjct: 121  SPQGLGTTERTSFQPPTLEKSGSFSSSVSDRANIPQFVALGELEFRKAFLILSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            E V TA+QI+SLSQL MEKFE EVWK FG+K ++ E+RR+ VDWDRRKTHIYHCYVALDG
Sbjct: 181  EMVATADQIRSLSQLPMEKFELEVWKTFGEKCVSKEDRRVNVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            SY+FKGPFLNNTKTHLQRVLGDDNVLMVKFA+D SD    NH GGSFYAYNKIARDGILL
Sbjct: 241  SYKFKGPFLNNTKTHLQRVLGDDNVLMVKFAKDTSDRCSTNHLGGSFYAYNKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLR+Y FFVFKDGGKEEKKKNPT SAVKCYFVRMESDAY+DKI PYKLSN+T+FEARSLF
Sbjct: 301  GLRQYCFFVFKDGGKEEKKKNPTASAVKCYFVRMESDAYLDKIRPYKLSNKTLFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSS+ASYMARFSLILSK+I LKIDLSTV VQRIGDIPCKD+YGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSVASYMARFSLILSKSINLKIDLSTVNVQRIGDIPCKDVYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 519
            TDGTGFISEDLALECPMNVFKGQAKHD +LKR  AFE FQNKTL LTLPGLELREPPLLI
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDTNLKRFSAFEEFQNKTLQLTLPGLELREPPLLI 480

Query: 520  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 579
            QFRLFYNG AVKGTFL+NKQLP RTIQIR+SMIKVEIDP+L N +TENS+E+VGTSN PK
Sbjct: 481  QFRLFYNGRAVKGTFLINKQLPSRTIQIRNSMIKVEIDPNLENAKTENSMEVVGTSNHPK 540

Query: 580  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639
            +TFLSRNLIALLNYGGVPREYFM ILVDAL DVQGVFSSKRAALRVSINNG++DDFLVAR
Sbjct: 541  KTFLSRNLIALLNYGGVPREYFMNILVDALSDVQGVFSSKRAALRVSINNGDLDDFLVAR 600

Query: 640  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 699
            MIL+GIPLDESYLQYRLS+LL+EEKKSLKSGRLH+P CYYLMGT DPTCTLES EVCVIL
Sbjct: 601  MILSGIPLDESYLQYRLSMLLREEKKSLKSGRLHVPGCYYLMGTADPTCTLESDEVCVIL 660

Query: 700  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 759
            ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFS KGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSCKGPRSVADEIAG 720

Query: 760  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 819
            GDFDGDMYWVSRNSQLLEYFRP EPWRPSPS E +TN+KP EFS E+LE+ELFKLFL+TR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPGEPWRPSPSMEGITNKKPNEFSAEDLEDELFKLFLTTR 780

Query: 820  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 879
            FQPSYAKSVAADNWLALMDQ LMLGE+RKEERNR+RAKILQLINIYYDALDAPKKGGKKI
Sbjct: 781  FQPSYAKSVAADNWLALMDQLLMLGEDRKEERNRVRAKILQLINIYYDALDAPKKGGKKI 840

Query: 880  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 939
            EVPKHLKAGTLPHFMERGKNSY STSILGQIFDTVNMYQEEVPNIEVQKLPCFE++VP+ 
Sbjct: 841  EVPKHLKAGTLPHFMERGKNSYTSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEDQVPDD 900

Query: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 999
            I MKWKF YE+YR +M DAMQLDPDAKN+AAEATIKKYKEILYGAEELEGSPR  ++V +
Sbjct: 901  ILMKWKFHYEMYRAEMKDAMQLDPDAKNVAAEATIKKYKEILYGAEELEGSPRWLEEVCK 960

Query: 1000 EALAIYQVTYDHAMSH-SVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIF 1056
            EALAIY VTYDHAMSH SVR C FAW+VAGSALFKL A K SERSFLCLPSVMREIF
Sbjct: 961  EALAIYHVTYDHAMSHGSVRYCSFAWRVAGSALFKLCARKQSERSFLCLPSVMREIF 1014

[Close]
BLAST of IVF0006309 vs. NCBI nr
Match: TYK10155.1 (putative RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 2033 bits (5267), Expect = 0.0
Identity = 1017/1017 (100.00%), Postives = 1017/1017 (100.00%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 519
            TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 520  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 579
            QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 580  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 640  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 699
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 700  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 759
            ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 760  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 819
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

Query: 820  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 879
            FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI
Sbjct: 781  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 840

Query: 880  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 939
            EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY
Sbjct: 841  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 900

Query: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 999
            IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ
Sbjct: 901  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 960

Query: 1000 EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1056
            EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS
Sbjct: 961  EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1017

[Close]
BLAST of IVF0006309 vs. NCBI nr
Match: XP_008450775.1 (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 2025 bits (5246), Expect = 0.0
Identity = 1012/1017 (99.51%), Postives = 1015/1017 (99.80%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+YVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFY YNKIARDGILL
Sbjct: 241  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYVYNKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF
Sbjct: 301  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 519
            TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLI 480

Query: 520  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 579
            QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK
Sbjct: 481  QFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPK 540

Query: 580  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639
            RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR
Sbjct: 541  RTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 600

Query: 640  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVIL 699
            MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPTCTLESGEVCVIL
Sbjct: 601  MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTCTLESGEVCVIL 660

Query: 700  ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 759
            ENGQINGKVLVYRNPGLH GDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG
Sbjct: 661  ENGQINGKVLVYRNPGLHLGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAG 720

Query: 760  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 819
            GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR
Sbjct: 721  GDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 780

Query: 820  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 879
            FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI
Sbjct: 781  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 840

Query: 880  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 939
            EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY
Sbjct: 841  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEY 900

Query: 940  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 999
            IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ
Sbjct: 901  IFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQ 960

Query: 1000 EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1056
            EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS
Sbjct: 961  EALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIFS 1017

[Close]
BLAST of IVF0006309 vs. NCBI nr
Match: XP_016900924.1 (PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo] >XP_016900925.1 PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo])

HSP 1 Score: 2010 bits (5207), Expect = 0.0
Identity = 1012/1045 (96.84%), Postives = 1015/1045 (97.13%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR
Sbjct: 1    MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFS+S
Sbjct: 61   NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSVS 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERR+YVDWDRRKTHIYHCYVALDG
Sbjct: 181  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRVYVDWDRRKTHIYHCYVALDG 240

Query: 280  SYRFK----------------------------GPFLNNTKTHLQRVLGDDNVLMVKFAE 339
            SYRFK                            GPFLNNTKTHLQRVLGDDNVLMVKFAE
Sbjct: 241  SYRFKIFAAQSYNFYSVDQKLNLLQHGLKFLSSGPFLNNTKTHLQRVLGDDNVLMVKFAE 300

Query: 340  DKSDTHLPNHTGGSFYAYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 399
            DKSDTHLPNHTGGSFY YNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV
Sbjct: 301  DKSDTHLPNHTGGSFYVYNKIARDGILLGLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFV 360

Query: 400  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 459
            RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST
Sbjct: 361  RMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTIKLKIDLST 420

Query: 460  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 519
            VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR
Sbjct: 421  VKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKR 480

Query: 520  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 579
            IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM
Sbjct: 481  IPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSM 540

Query: 580  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 639
            IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD
Sbjct: 541  IKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKD 600

Query: 640  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 699
            VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR
Sbjct: 601  VQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGR 660

Query: 700  LHMPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEE 759
            LH+PECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLH GDIHVLTAKYVEE
Sbjct: 661  LHVPECYYLMGTVDPTCTLESGEVCVILENGQINGKVLVYRNPGLHLGDIHVLTAKYVEE 720

Query: 760  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 819
            LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST
Sbjct: 721  LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPST 780

Query: 820  EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER 879
            EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER
Sbjct: 781  EVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEER 840

Query: 880  NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF 939
            NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF
Sbjct: 841  NRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIF 900

Query: 940  DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE 999
            DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE
Sbjct: 901  DTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAE 960

Query: 1000 ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL 1056
            ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL
Sbjct: 961  ATIKKYKEILYGAEELEGSPRSNDDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSAL 1020

[Close]
BLAST of IVF0006309 vs. NCBI nr
Match: XP_011659949.1 (probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 1972 bits (5110), Expect = 0.0
Identity = 1000/1070 (93.46%), Postives = 1019/1070 (95.23%), Query Frame = 0 

Query: 1    MSLDCRILLMNIPNSVRGRIKATVFQNG-----------RNLHCFALAFTMADHFLEVSL 60
            M L CRILLMNI NSVRGRIK TVFQNG           RNLHC A AF MADHFLEVSL
Sbjct: 1    MRLHCRILLMNIRNSVRGRIKGTVFQNGFYRYADLLLRRRNLHCSASAFAMADHFLEVSL 60

Query: 61   PPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVRNLSGFILHMV 120
            PPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VRNLSGFILH+V
Sbjct: 61   PPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VRNLSGFILHLV 120

Query: 121  RKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGLGTAEN 180
            RKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFS+ SGQGLGTAEN
Sbjct: 121  RKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLGTAEN 180

Query: 181  ASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQIQ 240
            AS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESLERVTTA+QIQ
Sbjct: 181  ASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTADQIQ 240

Query: 241  SLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRFKGPFLN 300
            SLSQL MEKFEDEVWKIFGKKY+TNEERR+YVDWDRRKTHIYHC+VALDGS RFKGPFLN
Sbjct: 241  SLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDGSCRFKGPFLN 300

Query: 301  NTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRRYRFFVF 360
            NTKTHLQRVLGDDNVLMVKFAEDKSDT L NH+GGSFYAY+KIARDGILLGLRRY FFVF
Sbjct: 301  NTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVF 360

Query: 361  KDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAHMVSSIA 420
            KDGGKEEKKKNPTTSAVKCYFVRMESDAY+DKIEPYKLSNRTVFEARSLFMHAHMVSSIA
Sbjct: 361  KDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIA 420

Query: 421  SYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED 480
            SYMARFSLILSKTI LKIDLSTV VQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED
Sbjct: 421  SYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIHTDGTGFISED 480

Query: 481  LALECPMNVFKGQAKHDADLK----RIPAFEGFQNKTLPLTLPGLELREPPLLIQFRLFY 540
            LALECPMNVFKGQAKHDADLK    RIPAFEGFQNKTL LTLPGLELREPPLLIQFRLFY
Sbjct: 481  LALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFY 540

Query: 541  NGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSR 600
            NGLAVKGTFL+NKQLPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTSNPPKRTFLSR
Sbjct: 541  NGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSR 600

Query: 601  NLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI 660
            NLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI
Sbjct: 601  NLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGI 660

Query: 661  PLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENGQIN 720
            PLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPT TLESGEVCVILENGQIN
Sbjct: 661  PLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILENGQIN 720

Query: 721  GKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD 780
            GKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD
Sbjct: 721  GKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGD 780

Query: 781  MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYA 840
            MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLFLSTRFQPSYA
Sbjct: 781  MYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYA 840

Query: 841  KSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHL 900
            KSVAADNWLALMDQFLMLGEERKEERN IRAKILQLINIYYDALDAPKKGGKKIEVPKHL
Sbjct: 841  KSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHL 900

Query: 901  KAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEEVPEYIFMKWK 960
            KAGTLPHFMERGKNSYVSTSILGQIFDT NMYQEEVPNIEVQKLPCFEEE+PEYIFMKWK
Sbjct: 901  KAGTLPHFMERGKNSYVSTSILGQIFDTANMYQEEVPNIEVQKLPCFEEELPEYIFMKWK 960

Query: 961  FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDVYQEALAIY 1020
            FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN++VYQEALAIY
Sbjct: 961  FLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIY 1020

Query: 1021 QVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIF 1055
            QVTYDHAMS SVRNC FAWKVAGSALFKLYAIKHSERSF CLPSVMREIF
Sbjct: 1021 QVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREIF 1069

[Close]
BLAST of IVF0006309 vs. NCBI nr
Match: XP_011659951.1 (probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 1919 bits (4972), Expect = 0.0
Identity = 968/1020 (94.90%), Postives = 987/1020 (96.76%), Query Frame = 0 

Query: 40   MADHFLEVSLPPSVEHFLLQICELHDQPLPDAEVRWALASVGEVAALDALHKISCSSPVR 99
            MADHFLEVSLPPSVE FLL IC+LHDQPLPD EV  ALASVGEVAALDALHKISCS+ VR
Sbjct: 1    MADHFLEVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVGEVAALDALHKISCST-VR 60

Query: 100  NLSGFILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLS 159
            NLSGFILH+VRKDSCASPQNKMVRVSPHQSPSS C VSQLQSPSTCSVSLHQS STFS+ 
Sbjct: 61   NLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSPSTCSVSLHQSPSTFSVC 120

Query: 160  SGQGLGTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL 219
            SGQGLGTAENAS QPPTPEKSGSFSSSV DRARISQFVALGELEFRKAFLLLSYIGGESL
Sbjct: 121  SGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGELEFRKAFLLLSYIGGESL 180

Query: 220  ERVTTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDG 279
            ERVTTA+QIQSLSQL MEKFEDEVWKIFGKKY+TNEERR+YVDWDRRKTHIYHC+VALDG
Sbjct: 181  ERVTTADQIQSLSQLTMEKFEDEVWKIFGKKYVTNEERRVYVDWDRRKTHIYHCHVALDG 240

Query: 280  SYRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILL 339
            S RFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDT L NH+GGSFYAY+KIARDGILL
Sbjct: 241  SCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILL 300

Query: 340  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 399
            GLRRY FFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAY+DKIEPYKLSNRTVFEARSLF
Sbjct: 301  GLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLF 360

Query: 400  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGNVIYRDGKPLIH 459
            MHAHMVSSIASYMARFSLILSKTI LKIDLSTV VQRIGDIPCKDIYGNVIYRDGKPLIH
Sbjct: 361  MHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIYRDGKPLIH 420

Query: 460  TDGTGFISEDLALECPMNVFKGQAKHDADLK----RIPAFEGFQNKTLPLTLPGLELREP 519
            TDGTGFISEDLALECPMNVFKGQAKHDADLK    RIPAFEGFQNKTL LTLPGLELREP
Sbjct: 421  TDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREP 480

Query: 520  PLLIQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTS 579
            PLLIQFRLFYNGLAVKGTFL+NKQLPPRTIQIRDSMIKVEIDPDL NFETENSLELVGTS
Sbjct: 481  PLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTS 540

Query: 580  NPPKRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDF 639
            NPPKRTFLSRNLIALLNYGGVPREYFM ILVDALKDVQGVFSSKRAALRVSINNGEMDDF
Sbjct: 541  NPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDF 600

Query: 640  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEV 699
            LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLH+PECYYLMGTVDPT TLESGEV
Sbjct: 601  LVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEV 660

Query: 700  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVAD 759
            CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVE+LVPVVGNAKYAIFFSSKGPRSVAD
Sbjct: 661  CVILENGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVAD 720

Query: 760  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLF 819
            EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTN+KPKEFS +ELENELFKLF
Sbjct: 721  EIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLF 780

Query: 820  LSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKG 879
            LSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERN IRAKILQLINIYYDALDAPKKG
Sbjct: 781  LSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKG 840

Query: 880  GKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQEEVPNIEVQKLPCFEEE 939
            GKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDT NMYQEEVPNIEVQKLPCFEEE
Sbjct: 841  GKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTANMYQEEVPNIEVQKLPCFEEE 900

Query: 940  VPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSND 999
            +PEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN+
Sbjct: 901  LPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNE 960

Query: 1000 DVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREIF 1055
            +VYQEALAIYQVTYDHAMS SVRNC FAWKVAGSALFKLYAIKHSERSF CLPSVMREIF
Sbjct: 961  EVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVMREIF 1019

[Close]
BLAST of IVF0006309 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 875.5 bits (2261), Expect = 4.2e-254
Identity = 458/902 (50.78%), Postives = 615/902 (68.18%), Query Frame = 0 

Query: 168  ENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERVTTAEQ 227
            E  S     P      S        I Q VALGELEF+K FLLLSYI G+ + +V TA++
Sbjct: 103  EEMSVDSDAPSPKSLKSEDKGGSLHIPQLVALGELEFKKVFLLLSYIPGQHVGQVITADE 162

Query: 228  IQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRFK--- 287
            I+    L M ++E  VW   G+ Y   ++RRM + WD  KTH Y C VA +GSY FK   
Sbjct: 163  IRLWKDLPMVEYEAAVWDRLGRHYCPQKDRRM-LQWDSGKTHYYQCNVAPNGSYTFKVLS 222

Query: 288  ---GPFLNNTKTHLQRVLGDDNVLMVKFA--EDKSDTHLPNHTGGSFYAYNKIARDGILL 347
               GP L +T THL +VLGDDNVL VKFA  +  S T+  +H    ++ Y  IA++GI++
Sbjct: 223  ALQGPLLEHTGTHLHKVLGDDNVLTVKFADVQKSSSTYSIDH----YFTYKGIAKNGIMI 282

Query: 348  GLRRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLF 407
            GLRRY+FFVFKDGGKEEKKK+ +T  VKCYF+R +S A+ D   PY L+ ++++EAR  F
Sbjct: 283  GLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHF 342

Query: 408  MHAHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYG-NVIYRDGKPLI 467
            MH H   ++A+YMARFSLILSKT  L++D++ +   +I DI C D  G +V+ ++ KP I
Sbjct: 343  MHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCI 402

Query: 468  HTDGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLL 527
            H+DGTG+ISEDLA  CP+N+FKG+      ++                      ++PPLL
Sbjct: 403  HSDGTGYISEDLARMCPLNIFKGKCLRSESIQEAC------------------YQDPPLL 462

Query: 528  IQFRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPP 587
            IQFR+FY+G AVKGTFL+NK+L PRT+Q+R SMIKV  DP L NF T N+LE+V TSNPP
Sbjct: 463  IQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPP 522

Query: 588  KRTFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVA 647
            KRT LS+NL+ALL+YGG+P E+F+ IL++ L++ + +F +KRAAL  ++N GEMDD   A
Sbjct: 523  KRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA 582

Query: 648  RMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVI 707
            +MIL GIPLDE +L+  LS+LLK EK  LK+G+L + E YYLMGTVDPT  L+  EVCVI
Sbjct: 583  QMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVI 642

Query: 708  LENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIA 767
            LE+GQI+G+VLVYRNPGLHFGDIH+L A YV+ L   VGN+K+A+FF  KGPRS+ DEIA
Sbjct: 643  LESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIA 702

Query: 768  GGDFDGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLS 827
            GGDFDGDMY++SRN +LLE F+P EPW   +P ++  + R P + S EELE ELF++FL+
Sbjct: 703  GGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLT 762

Query: 828  TRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGK 887
              F  S    +AAD+WL +MD+FL+LG++R EE+  ++ K+L+LI+IYYDALDAPKK G 
Sbjct: 763  AGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK-GD 822

Query: 888  KIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMY--QEEVPNIEVQKLPCFEEE 947
            K+ +P  LK    PH+MER K  + STSILG IFD V     +E  P+ E+ KLPCFE+E
Sbjct: 823  KVYLPNKLKPDIFPHYMERDK-KFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDE 882

Query: 948  -VPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN 1007
             V E+   K +  Y+ YR +M  AM+ D D    +A   I++YK+  YGA   E S +S 
Sbjct: 883  PVSEFHMQKCRLWYDNYRTEMTQAMKTDKDE---SANEVIQRYKQEFYGAAGFEDSKKSL 942

Query: 1008 DDVYQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKH-SERSFLCLPSVMRE 1056
            +++Y +ALA+Y++ YD+A+   V  C F WKVAG  L + Y  K   E+  +C PSV++E
Sbjct: 943  EELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVLKE 976

[Close]
BLAST of IVF0006309 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 873.2 bits (2255), Expect = 2.1e-253
Identity = 491/1017 (48.28%), Postives = 654/1017 (64.31%), Query Frame = 0 

Query: 46   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 105
            E++L  SVE  L +I E H+  LP   E R  L+S+ E  AL+ L K+     ++ L G 
Sbjct: 14   EIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDGL 73

Query: 106  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGL 165
            I++ V+        +   R+SP +SP        +QSP T               + +  
Sbjct: 74   IMYFVKGTVTV---DGSPRLSPGESP--------VQSPRT--------------PAKKSC 133

Query: 166  GTAENASFQPPTPEKSGSFSSSVSDRARISQFVALGELEFRKAFLLLSYIGGESL-ERVT 225
              +++ S    TP               I   +ALGELEF+KAFLLLSYIGGESL E V 
Sbjct: 134  RASQDVSLDLETPSPKFMKREENGGSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVI 193

Query: 226  TAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYRF 285
            + +QI+    L M  +E  VW   G++Y + +ERR  ++ D   TH Y C+VA DGSY+F
Sbjct: 194  SGDQIRKWKDLPMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKF 253

Query: 286  KGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTHLPNHTGGSFYAYNKIARDGILLGLRR 345
            KG  L NT THL +VLGDDNVL VKF  DK    +  +    +  Y  IA++GI++GLRR
Sbjct: 254  KGHLLENTGTHLHKVLGDDNVLTVKF--DKV-LGVETYCNDLYSTYKGIAKNGIMVGLRR 313

Query: 346  YRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMHAH 405
            YRFFVFKDGGKEEKKK+ +T  VKCYF+R +S A +D   PY  + +++ EAR  FMH +
Sbjct: 314  YRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVN 373

Query: 406  MVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYG-NVIYRDGKPLIHTDG 465
             +SS+ +YM+RFSLILSKT  L++D++ +  ++I DI C D    +V+ ++GKP IH+DG
Sbjct: 374  TLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDG 433

Query: 466  TGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQFR 525
            TG+ISEDLA  CP+N+FKG++    ++         Q+K L     G   +EPPLLIQFR
Sbjct: 434  TGYISEDLARMCPVNIFKGKSMRSNNI---------QSKNLNFEGQGPCGQEPPLLIQFR 493

Query: 526  LFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKRTF 585
            +FYNG AVKGTFL NK+LPPRT+Q+R SMIKV  D  L N  T NSLE+V TSNPP++  
Sbjct: 494  IFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKAR 553

Query: 586  LSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMIL 645
            LSRNL+ALL+YGGVP ++F+ IL + L++ + +F S+RAA + +IN G  DD   A MIL
Sbjct: 554  LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTADMIL 613

Query: 646  AGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENG 705
             GIPLDE YL+ RLS LLK E+ +LK+GR  + E YY+MGTVDPT  L+  E+CVIL +G
Sbjct: 614  VGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSG 673

Query: 706  QINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDF 765
            QI+G VLVYRNPGLHFGDIHVL A YV+ L   VGNAK+A+FF  KGPRS+ DEIAGGDF
Sbjct: 674  QISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDF 733

Query: 766  DGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQ 825
            DGDMY++SRN +LLE+F+P EPW   S  +++   RKP E S EELE ELFK+FL  RF 
Sbjct: 734  DGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFC 793

Query: 826  PSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEV 885
                  +AAD WL +MD FL LG+E  +E+   +  IL+LI+IYYDALDAPKKG  K+++
Sbjct: 794  KRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGA-KVDL 853

Query: 886  PKHLKAGTLPHFMERG-KNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VPE 945
            P  L+    PH+MER  K  + STSILG IFDTV+ +  EE P  E+ KL  FE+E VP+
Sbjct: 854  PPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPK 913

Query: 946  YIFMKWKFLYELYRKDMVDA-MQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDV 1005
                K+   YE YR +M  A M+ D   +N      I++YK+  YGA   E S +S +++
Sbjct: 914  SHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEEL 973

Query: 1006 YQEALAIYQVTYDHAMSHSVRNCVFAWKVAGSALFKLYAIKHSERSFLCLPSVMREI 1055
            Y +ALA+Y V YD+A+   V  C FAW VAG  L K Y  K  ++S +   SV++++
Sbjct: 974  YPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKKL 990

[Close]
BLAST of IVF0006309 vs. TAIR 10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 785.0 bits (2026), Expect = 7.4e-227
Identity = 450/971 (46.34%), Postives = 608/971 (62.62%), Query Frame = 0 

Query: 46   EVSLPPSVEHFLLQICELHDQPLP-DAEVRWALASVGEVAALDALHKISCSSPVRNLSGF 105
            E++L  SVE  L ++   H+   P   E R  L+S+ E  AL+ L K+     V+ L G 
Sbjct: 19   EIALLGSVETMLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGI 78

Query: 106  ILHMVRKDSCASPQNKMVRVSPHQSPSSCCRVSQLQSPSTCSVSLHQSLSTFSLSSGQGL 165
            I++ +              V+   SP      S +Q P T                G+  
Sbjct: 79   IIYFLND-----------AVTVDGSPRLWSGESPVQFPRT---------------PGKKS 138

Query: 166  GTAENASFQPPTPEKSGSF--SSSVSDRARISQFVALGELEFRKAFLLLSYIGGESLERV 225
              A  A       + S  F       +   IS  +ALGELEF+KAFLLL+Y+GG+SL  V
Sbjct: 139  CRASQAEVSLDREDPSPKFLRGDENGESKHISLLLALGELEFKKAFLLLTYLGGKSLGEV 198

Query: 226  TTAEQIQSLSQLAMEKFEDEVWKIFGKKYITNEERRMYVDWDRRKTHIYHCYVALDGSYR 285
             + ++I+    L M  +E  VW   G+      E RM ++ D  KTH Y C+VA DGSYR
Sbjct: 199  ISGDEIRQWKDLPMVAYERAVWFKLGQ-----NEERMQLESDSGKTHYYQCHVAPDGSYR 258

Query: 286  FKGPFLNNTKTHLQRVLGDDNVLMVKFAE-DKSDTHLPNHTGGSFYAYNKIARDGILLGL 345
             KG FL NT THL +VLGDDNVL V+F +  K  T+  N     +  Y +IA++GI++GL
Sbjct: 259  LKGYFLENTGTHLHKVLGDDNVLTVRFDQLPKESTYCDN----PYSKYKEIAKNGIMVGL 318

Query: 346  RRYRFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYVDKIEPYKLSNRTVFEARSLFMH 405
            RRY+FFVFKDGGK EKKK  +T  VKCYF+R  S A  D   PY LS  ++ EAR  FMH
Sbjct: 319  RRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPYILSGMSIHEARMHFMH 378

Query: 406  AHMVSSIASYMARFSLILSKTIKLKIDLSTVKVQRIGDIPCKDIYGN-VIYRDGKPLIHT 465
             H + S A+YMARFSLILSKT KL++D++ + V +I DI C D   N V+ ++GKP IH+
Sbjct: 379  VHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHS 438

Query: 466  DGTGFISEDLALECPMNVFKGQAKHDADLKRIPAFEGFQNKTLPLTLPGLELREPPLLIQ 525
            DGTG+ISEDLA  CP+N+FKG++    +++                  G  ++EPPLLIQ
Sbjct: 439  DGTGYISEDLARMCPLNIFKGKSMRSNNIQ------------------GTCVQEPPLLIQ 498

Query: 526  FRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKR 585
             R+F +G AVKG FL+NK LPP+T+Q+R SMIKV  D +L NF T NSLE+V TSNPPKR
Sbjct: 499  IRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKR 558

Query: 586  TFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVARM 645
              LS+NL+ALL+YGGVP ++F+ IL++ L+  + +F   RAA + +++ G MDD    +M
Sbjct: 559  AKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQM 618

Query: 646  ILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILE 705
            I+AGIPLDE YL++ LS LLK EK  LK+G+L + E YYLMGTVDPT  L+  EV  + +
Sbjct: 619  IMAGIPLDEPYLKHYLSKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEVSGLAK 678

Query: 706  NGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGG 765
            +      VLVYRNPGLHFGDIH+L A YV+ L   VGN+KY +FF  KGPRS+ DEIAGG
Sbjct: 679  SQD----VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGG 738

Query: 766  DFDGDMYWVSRNSQLLEYFRPCEPW-RPSPSTEVVTNRKPKEFSVEELENELFKLFLSTR 825
            DFDGDMY++SRN +LLE+++P EPW   SP +++ T R+P E S E+LE ELFK+FL T 
Sbjct: 739  DFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTG 798

Query: 826  FQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKI 885
            F PS     AAD+WLA+MD+FL LG+E  +E+  ++ K+L+L +IYYDA+DAPK  G ++
Sbjct: 799  FSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKT-GTEV 858

Query: 886  EVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTVNMYQ-EEVPNIEVQKLPCFEEE-VP 945
             +P  +K    PH+MER K ++ STSILG IFDTV+ +  E+     + KL CFE+E V 
Sbjct: 859  NLPLDVKVDLFPHYMERNK-TFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCFEDEPVS 918

Query: 946  EYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNDDV 1005
            E+   K K  ++ YRK+M  AM  D D    +    I+KYK+  Y A   + S +  +++
Sbjct: 919  EFDMEKCKLWHKDYRKEMCQAMNSDDDD---SCNEVIQKYKQEFYSAAGFKESKKILEEL 927

Query: 1006 YQEALAIYQVT 1009
            Y +ALA+Y VT
Sbjct: 979  YPKALALYNVT 927

[Close]
BLAST of IVF0006309 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 117/418 (27.99%), Postives = 186/418 (44.50%), Query Frame = 0 

Query: 521 FRLFYNGLAVKGTFLVNKQLPPRTIQIRDSMIKVEIDPDLVNFETENSLELVGTSNPPKR 580
           F++ Y G   KG   V++    R + +RDSM+K         F++ N +  V        
Sbjct: 581 FQIRYGG--YKGVIAVDRS-SFRKLSLRDSMLK---------FDSNNRMLNVTRWTESMP 640

Query: 581 TFLSRNLIALLNYGGVPREYFMTILVDALKDVQGVFSSKRAALRVSIN-NGEMDDFLVAR 640
            FL+R +I LL+  G+    F  +    L  +  +   + AAL V    +GE    L+ +
Sbjct: 641 CFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVK 700

Query: 641 MILAG-IPLDESYLQYRLSVLLKEEKKSLKSG-RLHMPECYYLMGTVDPTCTLESGEVCV 700
           M+L G  P  E YL   L V  + +   LKS  R+ +P+   L+G +D    LE G+V V
Sbjct: 701 MLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYV 760

Query: 701 IL--------------------ENGQINGKVLVYRNPGLHFGDIHVLTAKYVEELVPVVG 760
            +                    E   + GKV+V +NP LH GDI VL A Y  E+     
Sbjct: 761 RVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIY--EVHFEEK 820

Query: 761 NAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNR 820
                I F  KG R   +E +GGD DGD ++VS + +++       P    P  +   +R
Sbjct: 821 GYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKII-------PSEMDPPMDYAGSR 880

Query: 821 KPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNRIRAK 880
            P+    +    E+ K F+      +          L ++    ++  +R  E+ R + K
Sbjct: 881 -PRLMDHDVTLEEIHKFFVDYMISDT----------LGVISTAHLVHADRDPEKARSQ-K 940

Query: 881 ILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYVSTSILGQIFDTV 915
            L+L N++  A+D  K G    E+P  LK    P F+ER  K +Y+S S+ G+++  V
Sbjct: 941 CLELANLHSRAVDFAKTGA-PAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAV 964

[Close]
BLAST of IVF0006309 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-19
Identity = 113/433 (26.10%), Postives = 188/433 (43.42%), Query Frame = 0 

Query: 549 DSMIKVEIDPDLVNFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYF---MTIL 608
           +S  K+ +   +  FE+EN+   V   +  +  +++R LI LL+  GV    F      +
Sbjct: 579 NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREV 638

Query: 609 VDALKDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYL-----QYRLSVLL 668
           VD L  +         AL + +  GE  + L A ++    P  E +L      +R S LL
Sbjct: 639 VDRLDAILTHPLEAHEALGL-MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLL 698

Query: 669 KEEKKSLKSGRLHMPECYYLMGTVDPTCTLESGEVCVILENGQ-------INGKVLVYRN 728
           +   K+    R+ +     +MG +D T TLE G+V V   +         I G V+V +N
Sbjct: 699 ELRTKT----RIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRPGRRFIITGPVVVAKN 758

Query: 729 PGLHFGDIHVLTAKYVEELVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNS 788
           P LH GD+ VL A      VP + +    + F  KG R   +E +G D DGD+Y+V  + 
Sbjct: 759 PCLHPGDVRVLQAVN----VPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQ 818

Query: 789 QLLEYFRPCEPWRPSPSTEVVTNRKPKEFSVEELENELFKLFLSTRFQPSYAKSVAADNW 848
           +L+    P     P   T   T     + ++EE+E E F  ++      + +  + A+  
Sbjct: 819 ELV----PPRTSEPMDYTPEPTQILDHDVTIEEVE-EYFANYI-----VNDSLGIIANAH 878

Query: 849 LALMDQFLMLGEERKEERNRIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHF 908
            A  D         KE         ++L   +  A+D PK G   + +P+HL     P F
Sbjct: 879 TAFAD---------KEPLKAFSDPCIELAKKFSTAVDFPKTGVAAV-IPQHLYVKEYPDF 938

Query: 909 MER-GKNSYVSTSILGQIFDTVNMYQEEVPNIEVQ---------------KLPCFEEEVP 951
           ME+  K +Y S +++G++F  V   +   P I ++               ++  FEE V 
Sbjct: 939 MEKPDKPTYESKNVIGKLFREVK--ERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVD 980

The following BLAST results are available for this feature:
BLAST of IVF0006309 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O821885.9e-25350.78Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana OX=3702 GN=RDR5 ... [more]
O821902.9e-25248.28Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=RDR3 ... [more]
O821891.0e-22546.34Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=RDR4 ... [more]
Q5QMN51.6e-21843.80Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp. japonica OX=39947... [more]
Q5QMN41.6e-21342.37Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp. japonica OX=39947... [more]
BLAST of IVF0006309 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CF420.0e+00100.00RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BPE50.0e+0099.51RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1[more]
A0A1S4DYX60.0e+0096.84RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103492255 PE=3 SV=1[more]
A0A0A0LYP80.0e+0093.46RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G574860 PE=3 SV=... [more]
A0A6J1CU260.0e+0085.25RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111014566 PE=3... [more]
BLAST of IVF0006309 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10155.10.0100.00putative RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo var. makuwa][more]
XP_008450775.10.099.51PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2 [Cucumis melo][more]
XP_016900924.10.096.84PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis melo] >XP... [more]
XP_011659949.10.093.46probable RNA-dependent RNA polymerase 5 isoform X1 [Cucumis sativus][more]
XP_011659951.10.094.90probable RNA-dependent RNA polymerase 5 isoform X3 [Cucumis sativus][more]
BLAST of IVF0006309 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19930.14.2e-25450.78RNA-dependent RNA polymerase family protein [more]
AT2G19910.12.1e-25348.28RNA-dependent RNA polymerase family protein [more]
AT2G19920.17.4e-22746.34RNA-dependent RNA polymerase family protein [more]
AT4G11130.11.9e-2527.99RNA-dependent RNA polymerase 2 [more]
AT1G14790.16.0e-1926.10RNA-dependent RNA polymerase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 281..914
e-value: 1.3E-107
score: 360.9
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 46..1055
NoneNo IPR availablePANTHERPTHR23079:SF13RNA-DEPENDENT RNA POLYMERASE 3-RELATEDcoord: 46..1055

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006309.5IVF0006309.5mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070919 production of siRNA involved in gene silencing by small RNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0031380 nuclear RNA-directed RNA polymerase complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity