IVF0006296 (gene) Melon (IVF77) v1

Overview
NameIVF0006296
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr12: 10482122 .. 10482412 (+)
RNA-Seq ExpressionIVF0006296
SyntenyIVF0006296
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

mRNA sequence

ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

Coding sequence (CDS)

ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

Protein sequence

MSVGSTPRSMSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP
Homology
BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 97
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 97
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7VJF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00010 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.6e-13
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 37 TRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP 96
          TRKLS G +R+ FLGT+T  PRAQ VSFAASAFP+V+DT RAF TRWK  P F PFW+ P
Sbjct: 15 TRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVAP 74

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7TUM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00010 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 20  QYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLV 73
           Q  SKG+  RETAFYP  RKL  G +R+ FLGT+T  PRA+ VSFAASAF +V
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

BLAST of IVF0006296 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.81e-30
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 96
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.69e-30
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 96
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0065855.1 (hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.32e-17
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 37 TRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP 96
          TRKLS G +R+ FLGT+T  PRAQ VSFAASAFP+V+DT RAF TRWK  P F PFW+ P
Sbjct: 15 TRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVAP 74

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0046850.1 (hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 7.39e-09
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 20  QYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLV 72
           Q  SKG+  RETAFYP  RKL  G +R+ FLGT+T  PRA+ VSFAASAF +V
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BQ752.2e-2466.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5Z62.2e-2466.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VJF78.6e-1368.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TUM92.0e-0662.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK01208.12.81e-3066.67uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa][more]
KAA0062674.14.69e-3066.67uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa][more]
KAA0065855.19.32e-1768.33hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa][more]
KAA0046850.17.39e-0962.26hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006296.1IVF0006296.1mRNA