IVF0006233 (gene) Melon (IVF77) v1

Overview
NameIVF0006233
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr10: 15902554 .. 15902832 (+)
RNA-Seq ExpressionIVF0006233
SyntenyIVF0006233
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGAAAATGGTTTTAACAATTCCTAATGCCATTAGTGATTCATCAGGAATGGCGTCAGGAACAGAGGGATCTCTTGATATTTTCGTGCTGCTTCGAGAGTTCCCACATAAAAAAGATGTTTCAGTTCTGTGAGACAGAATTGAAACCAAAAAAGAGAGAGGGAGATCATTCAGCGAAATGAAGAGAGGAGAAAGAGAGATCATTGTCGTTGTCGTTGTTCCCCTCGCCATCATGAGCCTGCCGTCTGTTACCGTTCATCTCTATTTGAGGTAA

mRNA sequence

ATGGCGGTGAAAATGGTTTTAACAATTCCTAATGCCATTAGTGATTCATCAGGAATGGCGTCAGGAACAGAGGGATCTCTTGATATTTTCGTGCTGCTTCGAGAGTTCCCACATAAAAAAGATGTTTCAGTTCTAGGGAGATCATTCAGCGAAATGAAGAGAGGAGAAAGAGAGATCATTGTCGTTGTCGTTGTTCCCCTCGCCATCATGAGCCTGCCGTCTGTTACCGTTCATCTCTATTTGAGGTAA

Coding sequence (CDS)

ATGGCGGTGAAAATGGTTTTAACAATTCCTAATGCCATTAGTGATTCATCAGGAATGGCGTCAGGAACAGAGGGATCTCTTGATATTTTCGTGCTGCTTCGAGAGTTCCCACATAAAAAAGATGTTTCAGTTCTAGGGAGATCATTCAGCGAAATGAAGAGAGGAGAAAGAGAGATCATTGTCGTTGTCGTTGTTCCCCTCGCCATCATGAGCCTGCCGTCTGTTACCGTTCATCTCTATTTGAGGTAA

Protein sequence

MAVKMVLTIPNAISDSSGMASGTEGSLDIFVLLREFPHKKDVSVLGRSFSEMKRGEREIIVVVVVPLAIMSLPSVTVHLYLR
Homology
[Close]
BLAST of IVF0006233 vs. ExPASy TrEMBL
Match: A0A5D3D6C1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00530 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 52 MKRGEREIIVVVVVPLAIMSLPSVTVHLYL 82
          MKRGEREIIVVVVVPLAIMSLPSVTVHLYL
Sbjct: 1  MKRGEREIIVVVVVPLAIMSLPSVTVHLYL 30

[Close]
BLAST of IVF0006233 vs. NCBI nr
Match: KAA0035932.1 (uncharacterized protein E6C27_scaffold56G001130 [Cucumis melo var. makuwa] >TYK19082.1 uncharacterized protein E5676_scaffold529G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 1.40e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 52 MKRGEREIIVVVVVPLAIMSLPSVTVHLYL 81
          MKRGEREIIVVVVVPLAIMSLPSVTVHLYL
Sbjct: 1  MKRGEREIIVVVVVPLAIMSLPSVTVHLYL 30

The following BLAST results are available for this feature:
BLAST of IVF0006233 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006233 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D6C19.6e-05100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0006233 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035932.11.40e-06100.00uncharacterized protein E6C27_scaffold56G001130 [Cucumis melo var. makuwa] >TYK1... [more]
BLAST of IVF0006233 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006233.1IVF0006233.1mRNA