IVF0006207 (gene) Melon (IVF77) v1

Overview
NameIVF0006207
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationchr07: 21789726 .. 21789967 (-)
RNA-Seq ExpressionIVF0006207
SyntenyIVF0006207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGACACCGCTCAAGCATGTCTAGAAAAAGCATCGAGACGGATGGAGAAGAGGGCGGATAAGAAGCGGTGCCCCTTTGAGTTTCGAAAAGGGGGATCAGGTTCTCGTCAAGGAACGCAACCATGGCGTACAGTCATCTATTGACCTGCAACAGAAAGAAGATTGTGCAGTTGAAAAAATCCTTCCTGACAGAGCAAGGAAGAGTGGAGGACCCACGGAAAGAATACATAAATTCCTAG

mRNA sequence

ATGACTGACACCGCTCAAGCATGTCTAGAAAAAGCATCGAGACGGATGGAGAAGAGGGCGGATAAGAAGCGGTGCCCCTTTGAGAACGCAACCATGGCGTACAGTCATCTATTGACCTGCAACAGAAAGAAGATTGTGCAGTTGAAAAAATCCTTCCTGACAGAGCAAGGAAGAGTGGAGGACCCACGGAAAGAATACATAAATTCCTAG

Coding sequence (CDS)

ATGACTGACACCGCTCAAGCATGTCTAGAAAAAGCATCGAGACGGATGGAGAAGAGGGCGGATAAGAAGCGGTGCCCCTTTGAGAACGCAACCATGGCGTACAGTCATCTATTGACCTGCAACAGAAAGAAGATTGTGCAGTTGAAAAAATCCTTCCTGACAGAGCAAGGAAGAGTGGAGGACCCACGGAAAGAATACATAAATTCCTAG

Protein sequence

MTDTAQACLEKASRRMEKRADKKRCPFENATMAYSHLLTCNRKKIVQLKKSFLTEQGRVEDPRKEYINS
Homology
BLAST of IVF0006207 vs. ExPASy TrEMBL
Match: A0A5D3DXN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00980 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 62
           D  +ACLEKASR+M+KR D+KRCP E          NATMA +HLL  NRKKIV+ KKS 
Sbjct: 80  DITRACLEKASRQMKKREDQKRCPPEFERRIRFLTSNATMANAHLLIYNRKKIVKSKKSL 139

Query: 63  LTEQGRVEDPRKEYINS 70
           LTEQ RVEDP++EY+NS
Sbjct: 140 LTEQERVEDPQEEYMNS 156

BLAST of IVF0006207 vs. ExPASy TrEMBL
Match: A0A5A7TZC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001020 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 62
           D  +ACLEKASR+M+KR D+KRCP E          NATMA +HLL  NRKKIV+ KKS 
Sbjct: 80  DITRACLEKASRQMKKREDQKRCPPEFERRIRFLTSNATMANAHLLIYNRKKIVKSKKSL 139

Query: 63  LTEQGRVEDPRKEYINS 70
           LTEQ RVEDP++EY+NS
Sbjct: 140 LTEQERVEDPQEEYMNS 156

BLAST of IVF0006207 vs. ExPASy TrEMBL
Match: A0A5D3C7V0 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00260 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 1   MTDTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKK 56
           M D A+ CLEKASR ME+R D+K+CPFE           ATM YS+L T  RKKI + +K
Sbjct: 318 MADIARVCLEKASRPMEERVDQKQCPFEFEWSTKFLINGATMPYSYLSTWKRKKIEKSRK 377

BLAST of IVF0006207 vs. ExPASy TrEMBL
Match: A0A5A7V4J8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00940 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 1   MTDTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKK 60
           M D A+ CLE+A+R ME+R D+KRCP E           AT  Y +LLT NRKKI +  K
Sbjct: 66  MVDIARVCLEEATRPMEERVDQKRCPLEFEWMTKLPINGATTPYDYLLTWNRKKIEKSMK 125

Query: 61  SFLTEQGRVED 62
             LTE+ RVED
Sbjct: 126 PLLTEE-RVED 135

BLAST of IVF0006207 vs. ExPASy TrEMBL
Match: A0A5A7UNG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001490 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 56
           D A+ACLEKASR  E+R D+K+CPFE           ATM YS+L T  RKKI + +KS 
Sbjct: 59  DIARACLEKASRPREERVDQKQCPFEFEWSTKFLINGATMPYSYLSTWKRKKIEKSRKSL 118

BLAST of IVF0006207 vs. NCBI nr
Match: KAA0048490.1 (hypothetical protein E6C27_scaffold61G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.32e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 62
           D  +ACLEKASR+M+KR D+KRCP E          NATMA +HLL  NRKKIV+ KKS 
Sbjct: 80  DITRACLEKASRQMKKREDQKRCPPEFERRIRFLTSNATMANAHLLIYNRKKIVKSKKSL 139

Query: 63  LTEQGRVEDPRKEYINS 69
           LTEQ RVEDP++EY+NS
Sbjct: 140 LTEQERVEDPQEEYMNS 156

BLAST of IVF0006207 vs. NCBI nr
Match: TYK28282.1 (hypothetical protein E5676_scaffold600G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.32e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 62
           D  +ACLEKASR+M+KR D+KRCP E          NATMA +HLL  NRKKIV+ KKS 
Sbjct: 80  DITRACLEKASRQMKKREDQKRCPPEFERRIRFLTSNATMANAHLLIYNRKKIVKSKKSL 139

Query: 63  LTEQGRVEDPRKEYINS 69
           LTEQ RVEDP++EY+NS
Sbjct: 140 LTEQERVEDPQEEYMNS 156

BLAST of IVF0006207 vs. NCBI nr
Match: KAA0062498.1 (hypothetical protein E6C27_scaffold130G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 5.23e-09
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 1   MTDTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKK 60
           M D A+ CLE+A+R ME+R D+KRCP E           AT  Y +LLT NRKKI +  K
Sbjct: 66  MVDIARVCLEEATRPMEERVDQKRCPLEFEWMTKLPINGATTPYDYLLTWNRKKIEKSMK 125

BLAST of IVF0006207 vs. NCBI nr
Match: TYK07555.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.42e-08
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 1   MTDTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKK 55
           M D A+ CLEKASR ME+R D+K+CPFE           ATM YS+L T  RKKI + +K
Sbjct: 318 MADIARVCLEKASRPMEERVDQKQCPFEFEWSTKFLINGATMPYSYLSTWKRKKIEKSRK 377

BLAST of IVF0006207 vs. NCBI nr
Match: KAA0056628.1 (uncharacterized protein E6C27_scaffold288G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.44e-08
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 3   DTAQACLEKASRRMEKRADKKRCPFE----------NATMAYSHLLTCNRKKIVQLKKSF 55
           D A+ACLEKASR  E+R D+K+CPFE           ATM YS+L T  RKKI + +KS 
Sbjct: 59  DIARACLEKASRPREERVDQKQCPFEFEWSTKFLINGATMPYSYLSTWKRKKIEKSRKSL 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DXN21.9e-1462.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZC91.9e-1462.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7V02.5e-0652.31RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V4J84.3e-0650.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UNG01.6e-0552.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0048490.18.32e-2062.34hypothetical protein E6C27_scaffold61G001020 [Cucumis melo var. makuwa][more]
TYK28282.18.32e-2062.34hypothetical protein E5676_scaffold600G00980 [Cucumis melo var. makuwa][more]
KAA0062498.15.23e-0950.70hypothetical protein E6C27_scaffold130G00940 [Cucumis melo var. makuwa][more]
TYK07555.11.42e-0852.31RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa][more]
KAA0056628.11.44e-0852.38uncharacterized protein E6C27_scaffold288G001490 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006207.2IVF0006207.2mRNA