IVF0006163 (gene) Melon (IVF77) v1

Overview
NameIVF0006163
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionChlorophyll a/b-binding family protein
Locationchr01: 9037204 .. 9038043 (-)
RNA-Seq ExpressionIVF0006163
SyntenyIVF0006163
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTTAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGGTATCCTAGTTTCAACATTCTTCTCTGTATGAAAGCTCTATGTCTATGTCAAGGTGTGCATAAA

mRNA sequence

AAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTTAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGGTATCCTAGTTTCAACATTCTTCTCTGTATGAAAGCTCTATGTCTATGTCAAGGTGTGCATAAA

Coding sequence (CDS)

ATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTTAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAAGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNGSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNVDTTLHL
Homology
BLAST of IVF0006163 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.4e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV 120
           SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV 120

Query: 121 DTTLHL 127
           DTTLHL
Sbjct: 121 DTTLHL 126

BLAST of IVF0006163 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

BLAST of IVF0006163 vs. ExPASy TrEMBL
Match: G7KEN3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L    N 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNN- 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
               R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ----RQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

BLAST of IVF0006163 vs. ExPASy TrEMBL
Match: A0A2N9FNY6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR  ++PTMV +SIALLQERFRQL+K K++RE KELL L  E+ R+     H EP    
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLKLFAETERI-MPTTHFEPSKLS 60

Query: 61  -EPNGSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P      R    +S SLGLNL   + KQ D    +A  +P+     P  + M ST RS
Sbjct: 61  FQPEMITPHRSTLQDSPSLGLNL---QTKQADF---QAMKMPTLPNLWPNGAAMASTSRS 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

BLAST of IVF0006163 vs. ExPASy TrEMBL
Match: A0A6P6A4C9 (uncharacterized protein LOC111306214 OS=Durio zibethinus OX=66656 GN=LOC111306214 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE+KELL L  ES R   + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREKKELLKLFSESGRASPT-MRYEPNRMS 60

Query: 61  -EPNGSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R     S SLGLN   +  +Q D     A ++P+ T   P ++   ST ++
Sbjct: 61  FQPEVILPYRPPHQESFSLGLN---SHSRQTDF---RAMAIPTATSLWPNSAATSSTSKN 120

Query: 121 FD-TNVDTTLHL 127
            + ++VDT+LHL
Sbjct: 121 LENSDVDTSLHL 125

BLAST of IVF0006163 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (620), Expect = 8.02e-81
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV 120
           SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNV 120

Query: 121 DTTLHL 126
           DTTLHL
Sbjct: 121 DTTLHL 126

BLAST of IVF0006163 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 172 bits (437), Expect = 3.47e-53
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHLEP  NG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEP--NG 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFM 109
           S T R LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFM
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

BLAST of IVF0006163 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (261), Expect = 5.00e-26
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVD-ASIMHLEPEPN 60
           MGRH SE TM+GTSIALLQERFRQLQK+KQ+RE+KELL+LL +SNRV+ +SIMHLE   N
Sbjct: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLES--N 60

Query: 61  GSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPS-------DTKFGPENSFMVST 113
            S   R L+ +SLSLGLN   + GKQVDI  HEAR++ S       +T+F P   F++S 
Sbjct: 61  RSSNSRDLNPDSLSLGLN-SSSAGKQVDI--HEARALKSANYPTDYETQFDP---FLISG 113

BLAST of IVF0006163 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 1.72e-23
Identity = 70/131 (53.44%), Postives = 80/131 (61.07%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           M RH SEP +VGTSIALLQERFRQLQK K +RE+KE++ LL +SN +  S          
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSLSTS---------- 62

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-- 120
               R L  NSLSLGLNL  N GKQVD   HE R +P DTK  P       T RS+DT  
Sbjct: 63  ----RDLAFNSLSLGLNLG-NAGKQVDS--HEGRLMPGDTKLIP------ITFRSYDTPD 110

Query: 121 ---NVDTTLHL 126
              +VDTTLHL
Sbjct: 123 VVVDVDTTLHL 110

BLAST of IVF0006163 vs. NCBI nr
Match: XP_003617949.1 (uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetical protein MTR_5g097300 [Medicago truncatula] >RHN58110.1 hypothetical protein MtrunA17_Chr5g0447571 [Medicago truncatula])

HSP 1 Score: 85.5 bits (210), Expect = 1.33e-18
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 0

Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L    N 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNN- 60

Query: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTN- 120
               R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT+ 
Sbjct: 61  ----RQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 126
           VDT+LHL
Sbjct: 121 VDTSLHL 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E6853.4e-62100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6173.7e-4885.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
G7KEN31.2e-1446.46Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1[more]
A0A2N9FNY67.8e-1445.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1[more]
A0A6P6A4C92.3e-1343.94uncharacterized protein LOC111306214 OS=Durio zibethinus OX=66656 GN=LOC11130621... [more]
Match NameE-valueIdentityDescription
KAA0048752.18.02e-81100.00hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAE8646145.13.47e-5386.24hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAG6589104.15.00e-2659.50hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572236.11.72e-2353.44hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_003617949.11.33e-1846.46uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetic... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 1..126
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006163.1IVF0006163.1mRNA