IVF0006095 (gene) Melon (IVF77) v1

Overview


Name	IVF0006095
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase, catalytic core
Location	chr05: 15275822 .. 15276611 (-)
RNA-Seq Expression	IVF0006095
Synteny	IVF0006095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCGGCCAAAATGTTATATTCTCGGAAAAAGCTGCAGAATCCAAAGGTCACTCCACTTCAGACAATTAAGAAAGCTCTTTCAGCCCTTCAAACTTTGCCAAGTGTCCAGATAATTGGGGTCTCCTTTAGTGCAAATTCTCCAGGGTTCTGGTATGCTGATGGGACTGATGAAGAGACAGAAAATTCCTTCAAGCCAGGTGGGTTCCGAATCTCCTAGTACTGAAGCCCATTCCAGCAAGAGGTCACCAATTAGCATCAAATCACAGAGTGCCCCATCCAATAAATCTTCCTTCACATCAATTAAGAAAGTCCCTCAGTGATTCAACGTCTTCCCCGAACTTTTTAGAAAAGGGTGCACTTTGTTCCAAAATGCTTGGACAGCCTTGGCAAACTCAGACCTATTGGAAGAAAGCTGTGTGAAAATCCTTAGTCCTGGATTTACTTGCACCAGGTCAGTTAGCCCTTCCCATTCTTCTCCCCAAATTCATTTTTCCCCATTCAGAATACCTGGCTCAAACTGCGATTTTATCCGAGGTTTCCCCTCCTCCACAATCCCACAATCAGTAGATGACGTATCAGACAATGAAGATTCCATAATCAGTGTTAGTAGCGAAGATCTATCCCCAGAAGAAGTGGAAGGAGCCAAGGGCGCTGAGAGGCAAAAAGAAGAGGAAGAGAATATAGATGCAAGTGGGGCTGAATTTGCAAATTTATTTCTCACCAGGAAAAAAGAAATAGTCACGACAGAAGCTAGCAACATTCCCTCACATCTGGTTCAAATGTGA

mRNA sequence

ATGTTAGCGGCCAAAATGTTATATTCTCGGAAAAAGCTGCAGAATCCAAAGGTCACTCCACTTCAGACAATTAAGAAAGCTCTTTCAGCCCTTCAAACTTTGCCAAGTGTCCAGATAATTGGGGTCTCCTTTAGTGCAAATTCTCCAGGGTTCTGGTATGCTGATGGGACTGATGAAGAGACAGAAAATTCCTTCAAGCCAGCCTTGGCAAACTCAGACCTATTGGAAGAAAGCTGTGTGAAAATCCTTAGTCCTGGATTTACTTGCACCAGGTCAGTTAGCCCTTCCCATTCTTCTCCCCAAATTCATTTTTCCCCATTCAGAATACCTGGCTCAAACTGCGATTTTATCCGAGGTTTCCCCTCCTCCACAATCCCACAATCAGTAGATGACGTATCAGACAATGAAGATTCCATAATCAGTGTTAGTAGCGAAGATCTATCCCCAGAAGAAGTGGAAGGAGCCAAGGGCGCTGAGAGGCAAAAAGAAGAGGAAGAGAATATAGATGCAAGTGGGGCTGAATTTGCAAATTTATTTCTCACCAGGAAAAAAGAAATAGTCACGACAGAAGCTAGCAACATTCCCTCACATCTGGTTCAAATGTGA

Coding sequence (CDS)

ATGTTAGCGGCCAAAATGTTATATTCTCGGAAAAAGCTGCAGAATCCAAAGGTCACTCCACTTCAGACAATTAAGAAAGCTCTTTCAGCCCTTCAAACTTTGCCAAGTGTCCAGATAATTGGGGTCTCCTTTAGTGCAAATTCTCCAGGGTTCTGGTATGCTGATGGGACTGATGAAGAGACAGAAAATTCCTTCAAGCCAGCCTTGGCAAACTCAGACCTATTGGAAGAAAGCTGTGTGAAAATCCTTAGTCCTGGATTTACTTGCACCAGGTCAGTTAGCCCTTCCCATTCTTCTCCCCAAATTCATTTTTCCCCATTCAGAATACCTGGCTCAAACTGCGATTTTATCCGAGGTTTCCCCTCCTCCACAATCCCACAATCAGTAGATGACGTATCAGACAATGAAGATTCCATAATCAGTGTTAGTAGCGAAGATCTATCCCCAGAAGAAGTGGAAGGAGCCAAGGGCGCTGAGAGGCAAAAAGAAGAGGAAGAGAATATAGATGCAAGTGGGGCTGAATTTGCAAATTTATTTCTCACCAGGAAAAAAGAAATAGTCACGACAGAAGCTAGCAACATTCCCTCACATCTGGTTCAAATGTGA

Protein sequence

MLAAKMLYSRKKLQNPKVTPLQTIKKALSALQTLPSVQIIGVSFSANSPGFWYADGTDEETENSFKPALANSDLLEESCVKILSPGFTCTRSVSPSHSSPQIHFSPFRIPGSNCDFIRGFPSSTIPQSVDDVSDNEDSIISVSSEDLSPEEVEGAKGAERQKEEEENIDASGAEFANLFLTRKKEIVTTEASNIPSHLVQM

Homology

[Close]

BLAST of IVF0006095 vs. ExPASy TrEMBL
Match: A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 54  ADGTDEETENSFKPALANSDLLEESCVKILSPGF-TCTRSVSPSHSSPQIHFSPFRIPGS 113
           ADGT   T+  FK   A S  + + C    S GF +   S S S SS  +HFSPF+IPG 
Sbjct: 402 ADGTTRPTK--FK---APSGWIVK-CAAQNSLGFQSFVHSASSSPSSSNVHFSPFKIPGL 461

Query: 114 NCDFIRGFPSSTIPQSVDDVSDNEDSIISVSSEDLSPEEVEGAKGAERQKEEEENIDASG 173
           NCDF RG PSSTI  +VD+ S++EDS+ISVSSE+L PEE    +  E    E ++ID+ G
Sbjct: 462 NCDFERGVPSSTISSAVDEGSEDEDSVISVSSEELIPEEDLCTEETETPSGEADDIDSFG 521

Query: 174 AEFANLFLTRKKEIVTTEASNIPS 197
            EFAN     +++ V  +    PS
Sbjct: 522 PEFANSSFLPEQKGVRQDRGTCPS 539

[Close]

BLAST of IVF0006095 vs. NCBI nr
Match: KAA0051398.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.26e-17
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 54  ADGTDEETENSFKPALANSDLLEESCVKILSPGF-TCTRSVSPSHSSPQIHFSPFRIPGS 113
           ADGT   T+  FK   A S  + + C    S GF +   S S S SS  +HFSPF+IPG 
Sbjct: 402 ADGTTRPTK--FK---APSGWIVK-CAAQNSLGFQSFVHSASSSPSSSNVHFSPFKIPGL 461

Query: 114 NCDFIRGFPSSTIPQSVDDVSDNEDSIISVSSEDLSPEEVEGAKGAERQKEEEENIDASG 173
           NCDF RG PSSTI  +VD+ S++EDS+ISVSSE+L PEE    +  E    E ++ID+ G
Sbjct: 462 NCDFERGVPSSTISSAVDEGSEDEDSVISVSSEELIPEEDLCTEETETPSGEADDIDSFG 521

Query: 174 AEFANLFLTRKKEIVTTEASNIPS 196
            EFAN     +++ V  +    PS
Sbjct: 522 PEFANSSFLPEQKGVRQDRGTCPS 539

The following BLAST results are available for this feature:

BLAST of IVF0006095 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U808	6.6e-15	45.14	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of IVF0006095 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051398.1	1.26e-17	45.14	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006095 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006095.1	IVF0006095.1	mRNA