IVF0006075 (gene) Melon (IVF77) v1

Overview


Name	IVF0006075
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S2, chloroplastic
Location	tig00000662: 137891 .. 138676 (+)
RNA-Seq Expression	IVF0006075
Synteny	IVF0006075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGGAGAGATGATGGAGGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTCAAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAACTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTGCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

mRNA sequence

ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGGAGAGATGATGGAGGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTCAAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAACTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTGCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Coding sequence (CDS)

ATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTAAGAAAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGGAGAGATGATGGAGGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTCAAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAACTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGACTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTAAATATATGACGGGGTTACCCGATGTTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCCGATCTCGCAGATATTGCGATTCCAGCGAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTCGGAGGGTCGTTCTAGCTCTATACGAAATTCTTGA

Protein sequence

MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS

Homology

[Close]

BLAST of IVF0006075 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 6.3e-132
Identity = 231/236 (97.88%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLT+TARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 5.7e-125
Identity = 220/235 (93.62%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNI+L EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAA+RGKQFLIVGTKNKAADSVARAA R RCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQK G LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of IVF0006075 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.7e-124
Identity = 219/235 (93.19%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNI+L EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAA+RGKQFLIVGTKNKAADSVARAA + RCHYVNKKWLGGM TNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLVFAI EGRSS IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235

[Close]

BLAST of IVF0006075 vs. ExPASy Swiss-Prot
Match: Q0G9N0 (30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps2 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 8.2e-124
Identity = 217/235 (92.34%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAA+RGK FL+VGTKNKAADSVA AA R RCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKNFLLVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LR EQKTG LNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEY AL+EC
Sbjct: 121 LRAEQKTGKLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           +TLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLV AI EGRSSSIRN
Sbjct: 181 LTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVSAICEGRSSSIRN 235

[Close]

BLAST of IVF0006075 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 4.1e-123
Identity = 216/235 (91.91%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNI+L EMMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAA+RGKQFLIVGTKNK ADSVA AA R RCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGL+RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPD+VIIVDQ EEY ALQEC
Sbjct: 121 LRTEQKTGGLSRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRN 261
           ITLGIPTICLIDTNCDPDLADI+IPANDDAI+SIRLILNKLVFAI EGRS  IRN
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSGYIRN 235

[Close]

BLAST of IVF0006075 vs. ExPASy TrEMBL
Match: A0A6M3W1W6 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.1e-146
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60
           MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI
Sbjct: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60

Query: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120
           SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY
Sbjct: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

Query: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180
           VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI
Sbjct: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180

Query: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240
           KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR
Sbjct: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240

Query: 241 LILNKLVFAISEGRSSSIRNS 262
           LILNKLVFAISEGRSSSIRNS
Sbjct: 241 LILNKLVFAISEGRSSSIRNS 261

[Close]

BLAST of IVF0006075 vs. ExPASy TrEMBL
Match: A0A249RXU1 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rps2 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. ExPASy TrEMBL
Match: A0A249RZ38 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 GN=rps2 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. ExPASy TrEMBL
Match: A0A249RYA9 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. conomon OX=3657 GN=rps2 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. ExPASy TrEMBL
Match: A0A249RYJ8 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=rps2 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. NCBI nr
Match: QJF46372.1 (ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 527 bits (1357), Expect = 9.73e-189
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60
           MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI
Sbjct: 1   MGTIIYFYFSSSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYI 60

Query: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120
           SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY
Sbjct: 61  SAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 120

Query: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180
           VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI
Sbjct: 121 VNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGI 180

Query: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240
           KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR
Sbjct: 181 KYMTGLPDVVIIVDQQEEYRALQECITLGIPTICLIDTNCDPDLADIAIPANDDAIASIR 240

Query: 241 LILNKLVFAISEGRSSSIRNS 261
           LILNKLVFAISEGRSSSIRNS
Sbjct: 241 LILNKLVFAISEGRSSSIRNS 261

[Close]

BLAST of IVF0006075 vs. NCBI nr
Match: YP_004841772.1 (ribosomal protein S2 [Cucumis melo subsp. melo] >YP_009860062.1 ribosomal protein S2 [Cucumis melo subsp. agrestis] >ASY96627.1 ribosomal protein S2 [Cucumis melo var. conomon] >ASY96715.1 ribosomal protein S2 [Cucumis melo var. makuwa] >ASY96889.1 ribosomal protein S2 [Cucumis melo var. dudaim] >ASY97150.1 ribosomal protein S2 [Cucumis melo var. inodorus] >QRW36544.1 ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 479 bits (1233), Expect = 3.13e-170
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 261
           ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. NCBI nr
Match: ASY96801.1 (ribosomal protein S2 [Cucumis melo var. momordica] >ASY96975.1 ribosomal protein S2 [Cucumis melo var. cantalupo] >ASY97323.1 ribosomal protein S2 [Cucumis melo var. flexuosus] >ASY97062.1 ribosomal protein S2 [Cucumis melo var. cantalupo] >ASY97236.1 ribosomal protein S2 [Cucumis melo var. cantalupo])

HSP 1 Score: 478 bits (1229), Expect = 1.27e-169
Identity = 234/236 (99.15%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 261
           ITLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. NCBI nr
Match: ASY96366.1 (ribosomal protein S2 [Cucumis melo subsp. agrestis])

HSP 1 Score: 477 bits (1228), Expect = 1.81e-169
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL
Sbjct: 1   MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 261
           ITLGIPTICLIDTNCDPDLADI IPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADIPIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. NCBI nr
Match: YP_009004033.1 (ribosomal protein S2 [Cucumis hystrix] >YP_009346474.1 ribosomal protein S2 [Cucumis x hytivus] >YP_247588.1 ribosomal protein S2 [Cucumis sativus] >Q4VZP4.1 RecName: Full=30S ribosomal protein S2, chloroplastic [Cucumis sativus] >ALF03290.1 ribosomal protein S2 [Cucumis sativus var. hardwickii] >AVE15320.1 ribosomal protein S2 [Cucumis sativus var. sativus] >AAZ94640.1 ribosomal protein S2 [Cucumis sativus] >ABI97406.1 ribosomal protein S2 [Cucumis sativus] >ABI98734.1 ribosomal protein S2 [Cucumis sativus])

HSP 1 Score: 471 bits (1213), Expect = 3.50e-167
Identity = 231/236 (97.88%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLT+TARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKTGGLNRLPKRDAAM KRQLSHLQTYLGGIKYMTGLPD+VIIVDQQEEYRALQEC
Sbjct: 121 LRTEQKTGGLNRLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQEC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 261
           ITLGIPTICLIDTNCDPDLADI+IPANDDAIASIRLILNKLVFAISEGRSSSIRNS
Sbjct: 181 ITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 236

[Close]

BLAST of IVF0006075 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 426.4 bits (1095), Expect = 1.7e-119
Identity = 209/236 (88.56%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 26  MTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDL 85
           MT+RYWNI L EMM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLT+TARFLSEACDL
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 86  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 145
           VFDAA+RGKQFLIVGTKNKAAD V+RAA R RCHYVNKKWLGGMLTNWSTTE RLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 120

Query: 146 LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDVVIIVDQQEEYRALQEC 205
           LRTEQKT G NRLPKRDAA+LKRQLS L+TYLGGIKYMTGLPD+VII+DQQEEY AL+EC
Sbjct: 121 LRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALREC 180

Query: 206 ITLGIPTICLIDTNCDPDLADIAIPANDDAIASIRLILNKLVFAISEGRSSSIRNS 262
           ITLGIPTI LIDTNC+PDLADI+IPANDDAIASIR ILNKLVFAI EGRSS I+NS
Sbjct: 181 ITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 236

The following BLAST results are available for this feature:

BLAST of IVF0006075 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	6.3e-132	97.88	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
Q49L09	5.7e-125	93.62	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
Q0ZJ31	1.7e-124	93.19	30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ...	[more]
Q0G9N0	8.2e-124	92.34	30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp...	[more]
Q1KXW9	4.1e-123	91.91	30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=...	[more]

BLAST of IVF0006075 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3W1W6	2.1e-146	100.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=...	[more]
A0A249RXU1	1.1e-131	100.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo subsp. agrestis OX=21761...	[more]
A0A249RZ38	1.1e-131	100.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 G...	[more]
A0A249RYA9	1.1e-131	100.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. conomon OX=3657 GN=...	[more]
A0A249RYJ8	1.1e-131	100.00	30S ribosomal protein S2, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0006075 vs. NCBI nr


Match Name	E-value	Identity	Description
QJF46372.1	9.73e-189	100.00	ribosomal protein S2 [Cucumis melo]	[more]
YP_004841772.1	3.13e-170	100.00	ribosomal protein S2 [Cucumis melo subsp. melo] >YP_009860062.1 ribosomal protei...	[more]
ASY96801.1	1.27e-169	99.15	ribosomal protein S2 [Cucumis melo var. momordica] >ASY96975.1 ribosomal protein...	[more]
ASY96366.1	1.81e-169	99.58	ribosomal protein S2 [Cucumis melo subsp. agrestis]	[more]
YP_009004033.1	3.50e-167	97.88	ribosomal protein S2 [Cucumis hystrix] >YP_009346474.1 ribosomal protein S2 [Cuc...	[more]

BLAST of IVF0006075 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	1.7e-119	88.56	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 66..75 score: 62.46 coord: 116..133 score: 48.38 coord: 225..239 score: 56.41 coord: 35..53 score: 45.75 coord: 204..215 score: 50.51 coord: 187..204 score: 39.66
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 38..253 e-value: 2.0E-80 score: 269.1
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 38..252 e-value: 1.93495E-93 score: 271.378
None	No IPR available	GENE3D	1.10.287.610	Helix hairpin bin	coord: 131..181 e-value: 1.8E-25 score: 90.9
None	No IPR available	GENE3D	3.40.50.10490		coord: 35..261 e-value: 1.0E-77 score: 261.8
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAM	TIGR01011	TIGR01011	coord: 33..255 e-value: 2.5E-80 score: 266.9
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 25..255
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 24..254 score: 37.706757
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 187..211
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 35..46
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 36..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006075.2	IVF0006075.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome