IVF0006006 (gene) Melon (IVF77) v1

Overview


Name	IVF0006006
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 17080993 .. 17081442 (+)
RNA-Seq Expression	IVF0006006
Synteny	IVF0006006

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

mRNA sequence

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Protein sequence

MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK

Homology

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BLAST of IVF0006006 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 122/157 (77.71%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 2   YDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYCD 61
           +D+ +    +H GRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGS MTMMPTFGAGYCD
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 62  SEFGTGYYDAG---------VDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNSTNKNQ 121
           SE GTGYYDAG         V PSNSYMHG   A+GNITNICIMKHLQMYQID STNKNQ
Sbjct: 319 SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 378

Query: 122 RIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK 150
           R KRT+NNIEFRV+VDNQL+ID+++VVEHIDFLLSIK
Sbjct: 379 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

[Close]

BLAST of IVF0006006 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 109/155 (70.32%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 1   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
           MY++ IVP PVHR RVRVEE ELDEVYHNVEEVP TTQTQSQT YGSLMTMMPTFG G+ 
Sbjct: 70  MYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLMTMMPTFGVGFV 129

Query: 61  DSEFGTGYYDAGVDPSNSYM--HGL------DVAMGNITNICIMKHLQMYQIDNSTNKNQ 120
                       +   +++M  H L      DVAMGNI NICIMKHLQMYQID STNKNQ
Sbjct: 130 ILRSVEDIMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQ 189

Query: 121 RIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLS 148
           R KRT+NNIE RVDV+NQLEIDD+RVVEHIDFLLS
Sbjct: 190 RTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

[Close]

BLAST of IVF0006006 vs. ExPASy TrEMBL
Match: A0A5A7VEC1 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001470 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 74/97 (76.29%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
           MYDLPIVP P+HRGR+RVEE ELDEVYHNVEEVPPTT+TQSQTGYGSLMTMMPTFGA YC
Sbjct: 99  MYDLPIVPLPIHRGRIRVEEAELDEVYHNVEEVPPTTKTQSQTGYGSLMTMMPTFGARYC 158

Query: 61  DSEFGTGYYDAGVD---------PSNSYMHGLDVAMG 89
           DSE G GYYDAGVD         PS SYMHG +   G
Sbjct: 159 DSEVGRGYYDAGVDLSSSYMDVGPSTSYMHGYERGYG 195

[Close]

BLAST of IVF0006006 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.8e-33
Identity = 75/91 (82.42%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
          MYDLPIVPP VHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGS M MMPTFGAGYC
Sbjct: 1  MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61 DSEFGTGYYDAG---------VDPSNSYMHG 83
          DSE  TGYYDAG         V PSNSYMHG
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHG 91

[Close]

BLAST of IVF0006006 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 79/120 (65.83%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
           MYDL IVPPPVHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGS MTMMPTFGAGY 
Sbjct: 182 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYY 241

Query: 61  DSEFGTGYYDAG---------VDPSNSYMHGLDVAMGNITN-ICIMKHLQMYQIDNSTNK 111
           DSE GTGYYDAG         V PSN YMHG     G     +C  + ++  ++   T K
Sbjct: 242 DSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRK 301

[Close]

BLAST of IVF0006006 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (623), Expect = 6.51e-77
Identity = 121/157 (77.07%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 2   YDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYCD 61
           +D+ +    +H GRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGS MTMMPTFGAGYCD
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 62  SEFGTGYYDAGVDP---------SNSYMHGLDVAMGNITNICIMKHLQMYQIDNSTNKNQ 121
           SE GTGYYDAG+ P         SNSYMHG   A+GNITNICIMKHLQMYQID STNKNQ
Sbjct: 319 SEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQ 378

Query: 122 RIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK 149
           R KRT+NNIEFRV+VDNQL+ID+++VVEHIDFLLSIK
Sbjct: 379 RTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

[Close]

BLAST of IVF0006006 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 1.22e-62
Identity = 109/155 (70.32%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 1   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
           MY++ IVP PVHR RVRVEE ELDEVYHNVEEVP TTQTQSQT YGSLMTMMPTFG G+ 
Sbjct: 70  MYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLMTMMPTFGVGFV 129

Query: 61  DSEFGTGYYDAGVDPSNSYM--HGL------DVAMGNITNICIMKHLQMYQIDNSTNKNQ 120
                       +   +++M  H L      DVAMGNI NICIMKHLQMYQID STNKNQ
Sbjct: 130 ILRSVEDIMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQ 189

Query: 121 RIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLS 147
           R KRT+NNIE RVDV+NQLEIDD+RVVEHIDFLLS
Sbjct: 190 RTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

[Close]

BLAST of IVF0006006 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 7.80e-44
Identity = 75/91 (82.42%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
          MYDLPIVPP VHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYGS M MMPTFGAGYC
Sbjct: 1  MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61 DSEFGTGYYDAG---------VDPSNSYMHG 82
          DSE  TGYYDAG         V PSNSYMHG
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHG 91

[Close]

BLAST of IVF0006006 vs. NCBI nr
Match: KAA0064245.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK18615.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (384), Expect = 2.42e-43
Identity = 74/97 (76.29%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
           MYDLPIVP P+HRGR+RVEE ELDEVYHNVEEVPPTT+TQSQTGYGSLMTMMPTFGA YC
Sbjct: 99  MYDLPIVPLPIHRGRIRVEEAELDEVYHNVEEVPPTTKTQSQTGYGSLMTMMPTFGARYC 158

Query: 61  DSEFGTGYYDAGVD---------PSNSYMHGLDVAMG 88
           DSE G GYYDAGVD         PS SYMHG +   G
Sbjct: 159 DSEVGRGYYDAGVDLSSSYMDVGPSTSYMHGYERGYG 195

[Close]

BLAST of IVF0006006 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 5.80e-43
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MYDLPIVPPPVHRGRVRVEETELDEVYHNVEEVPPTTQTQSQTGYGSLMTMMPTFGAGYC 60
          MYDLPIVP PVHRGRVRVEE ELDEVYHNVEEVPPTTQTQSQTGYG  MTMMPTFGAGYC
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGAGYC 60

Query: 61 DSEFGTGYYDAGVDPSNSYMH 81
          DSE  TGYYD GV  S+SYM+
Sbjct: 61 DSEVDTGYYDVGVGSSSSYMN 81

The following BLAST results are available for this feature:

BLAST of IVF0006006 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006006 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TDY5	2.2e-60	77.71	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3C2V9	1.3e-47	70.32	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7VEC1	3.0e-33	76.29	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	6.8e-33	82.42	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7TBF8	1.5e-32	65.83	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of IVF0006006 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041168.1	6.51e-77	77.07	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0040602.1	1.22e-62	70.32	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0049532.1	7.80e-44	82.42	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0064245.1	2.42e-43	76.29	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK16354.1	5.80e-43	86.42	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of IVF0006006 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006006.2	IVF0006006.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding