IVF0005974 (gene) Melon (IVF77) v1

Overview
NameIVF0005974
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr10: 13215134 .. 13215340 (+)
RNA-Seq ExpressionIVF0005974
SyntenyIVF0005974
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGTGCGAGCAGTTCCACGACATCATGTTCTCAGTTGGCAACAGAAAGGGAGATTCAAATACAAGCTAAACTTGATCAAGCTTTGGAACGAATTGAATTGCAAGATAAAAATTTCCAAGCGTTAGCTTTAGAAATTGAACAAATGCGAAAGCTGATACATGACATGACTCAGGCACAACAAGGACAACCACATGATCCTTAG

mRNA sequence

ATGATGAGTGCGAGCAGTTCCACGACATCATGTTCTCAGTTGGCAACAGAAAGGGAGATTCAAATACAAGCTAAACTTGATCAAGCTTTGGAACGAATTGAATTGCAAGATAAAAATTTCCAAGCGTTAGCTTTAGAAATTGAACAAATGCGAAAGCTGATACATGACATGACTCAGGCACAACAAGGACAACCACATGATCCTTAG

Coding sequence (CDS)

ATGATGAGTGCGAGCAGTTCCACGACATCATGTTCTCAGTTGGCAACAGAAAGGGAGATTCAAATACAAGCTAAACTTGATCAAGCTTTGGAACGAATTGAATTGCAAGATAAAAATTTCCAAGCGTTAGCTTTAGAAATTGAACAAATGCGAAAGCTGATACATGACATGACTCAGGCACAACAAGGACAACCACATGATCCTTAG

Protein sequence

MMSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQQGQPHDP
Homology
BLAST of IVF0005974 vs. ExPASy TrEMBL
Match: A0A5A7VKQ4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00150 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 2   MSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQ 61
           MSASSSTTSCSQ ATEREIQIQAKLDQ LERIE QD+NFQALA E+EQMRKLIHDMT+AQ
Sbjct: 665 MSASSSTTSCSQSATEREIQIQAKLDQDLERIEFQDRNFQALASEMEQMRKLIHDMTRAQ 724

Query: 62  QGQPHDP 69
           QG PHDP
Sbjct: 725 QGPPHDP 731

BLAST of IVF0005974 vs. ExPASy TrEMBL
Match: A0A5A7TBN0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00100 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.7e-20
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0

Query: 1   MMSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQA 60
           MMSASS TTSC Q AT+REIQI AKLDQALERIELQD+NFQALALE+EQ+RKLI DMT+A
Sbjct: 222 MMSASSFTTSCFQSATKREIQILAKLDQALERIELQDRNFQALALEMEQIRKLIQDMTRA 281

Query: 61  QQGQPHDP 69
           QQGQPHDP
Sbjct: 282 QQGQPHDP 289

BLAST of IVF0005974 vs. ExPASy TrEMBL
Match: A0A5A7U1L0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5066G00120 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.4e-19
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 2   MSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQ 61
           MSASSS  SCSQ  TEREIQIQAKLDQAL++IE QD+NFQALALE+E+MRKLIHDMTQAQ
Sbjct: 144 MSASSSMMSCSQSTTEREIQIQAKLDQALKQIEFQDRNFQALALEMEEMRKLIHDMTQAQ 203

Query: 62  QGQPHD 68
           QG PHD
Sbjct: 204 QGPPHD 209

BLAST of IVF0005974 vs. ExPASy TrEMBL
Match: A0A5A7UML8 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00080 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 4   ASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQQG 63
           ASSSTTSCSQ  TEREIQIQAKLDQALE+ ELQD+N+QALALE+EQ+RKLI DMT+AQQG
Sbjct: 50  ASSSTTSCSQSTTEREIQIQAKLDQALEQNELQDRNYQALALEMEQIRKLIQDMTRAQQG 109

Query: 64  QPHDP 69
            PHDP
Sbjct: 110 PPHDP 114

BLAST of IVF0005974 vs. ExPASy TrEMBL
Match: A0A5A7TXR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00280 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 3   SASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQQ 62
           SASSSTTSCSQ ATEREIQIQ KLDQALERI+LQD+N+QAL  E+EQMRKLIHDMT+ QQ
Sbjct: 78  SASSSTTSCSQSATEREIQIQDKLDQALERIKLQDRNYQALTSEMEQMRKLIHDMTRTQQ 137

Query: 63  GQPHDP 69
           G P+DP
Sbjct: 138 GPPYDP 143

BLAST of IVF0005974 vs. NCBI nr
Match: KAA0040862.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 9.23e-26
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0

Query: 1   MMSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQA 60
           MMSASS TTSC Q AT+REIQI AKLDQALERIELQD+NFQALALE+EQ+RKLI DMT+A
Sbjct: 222 MMSASSFTTSCFQSATKREIQILAKLDQALERIELQDRNFQALALEMEQIRKLIQDMTRA 281

Query: 61  QQGQPHDP 68
           QQGQPHDP
Sbjct: 282 QQGQPHDP 289

BLAST of IVF0005974 vs. NCBI nr
Match: KAA0067016.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26252.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.24e-25
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 2   MSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQ 61
           MSASSSTTSCSQ ATEREIQIQAKLDQ LERIE QD+NFQALA E+EQMRKLIHDMT+AQ
Sbjct: 665 MSASSSTTSCSQSATEREIQIQAKLDQDLERIEFQDRNFQALASEMEQMRKLIHDMTRAQ 724

Query: 62  QGQPHDP 68
           QG PHDP
Sbjct: 725 QGPPHDP 731

BLAST of IVF0005974 vs. NCBI nr
Match: KAA0054699.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ95596.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 1.77e-25
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0

Query: 4   ASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQQG 63
           ASSSTTSCSQ  TEREIQIQAKLDQALE+ ELQD+N+QALALE+EQ+RKLI DMT+AQQG
Sbjct: 50  ASSSTTSCSQSTTEREIQIQAKLDQALEQNELQDRNYQALALEMEQIRKLIQDMTRAQQG 109

Query: 64  QPHDP 68
            PHDP
Sbjct: 110 PPHDP 114

BLAST of IVF0005974 vs. NCBI nr
Match: KAA0046746.1 (uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 3.97e-25
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 3   SASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQQ 62
           SASSSTTSCSQ ATEREIQIQ KLDQALERI+LQD+N+QAL  E+EQMRKLIHDMT+ QQ
Sbjct: 78  SASSSTTSCSQSATEREIQIQDKLDQALERIKLQDRNYQALTSEMEQMRKLIHDMTRTQQ 137

Query: 63  GQPHDP 68
           G P+DP
Sbjct: 138 GPPYDP 143

BLAST of IVF0005974 vs. NCBI nr
Match: KAA0049662.1 (uncharacterized protein E6C27_scaffold163G001370 [Cucumis melo var. makuwa] >TYK18511.1 uncharacterized protein E5676_scaffold5066G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 5.44e-25
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 2   MSASSSTTSCSQLATEREIQIQAKLDQALERIELQDKNFQALALEIEQMRKLIHDMTQAQ 61
           MSASSS  SCSQ  TEREIQIQAKLDQAL++IE QD+NFQALALE+E+MRKLIHDMTQAQ
Sbjct: 144 MSASSSMMSCSQSTTEREIQIQAKLDQALKQIEFQDRNFQALALEMEEMRKLIHDMTQAQ 203

Query: 62  QGQPHD 67
           QG PHD
Sbjct: 204 QGPPHD 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VKQ46.0e-2188.06CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TBN06.7e-2085.29CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7U1L07.4e-1983.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UML82.2e-1883.08Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TXR12.2e-1881.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0040862.19.23e-2685.29CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0067016.11.24e-2588.06CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK26252.1 CACTA en-... [more]
KAA0054699.11.77e-2583.08zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ95596.1 zin... [more]
KAA0046746.13.97e-2581.82uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa][more]
KAA0049662.15.44e-2583.33uncharacterized protein E6C27_scaffold163G001370 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005974.1IVF0005974.1mRNA