IVF0005969 (gene) Melon (IVF77) v1

Overview
NameIVF0005969
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr08: 29948764 .. 29949066 (-)
RNA-Seq ExpressionIVF0005969
SyntenyIVF0005969
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGATTCGTGAAGGAAACTCTACTACTAGGCCACCATTTCTGGACGGAGGAAACTATGGATACTGGAAAGCACACATGGTTGTGTTACTTATGTCTCTGGACATGAGAAGTTGGAGAGCCATTATTTTAGAATGGGAGCATCCCACTGAAAAGGATGAAATTGGCAAAGTTACTCGAAAATCTAAATTGAAGTGGACAAGTGAAGAAGATGATGCAGCTGTTGGCAACTCACGTGCATTAAATGCATTGTTTAATGTCGTTGATCATAACATGGGATATCCTGAAGGTTGCTTATGA

mRNA sequence

ATGGACAAGATTCGTGAAGGAAACTCTACTACTAGGCCACCATTTCTGGACGGAGGAAACTATGGATACTGGAAAGCACACATGGTTGTGTTACTTATGTCTCTGGACATGAGAAGTTGGAGAGCCATTATTTTAGAATGGGAGCATCCCACTGAAAAGGATGAAATTGGCAAAGTTACTCGAAAATCTAAATTGAAGTGGACAAGTGAAGAAGATGATGCAGCTGTTGGCAACTCACGTGCATTAAATGCATTGTTTAATGTCGTTGATCATAACATGGGATATCCTGAAGGTTGCTTATGA

Coding sequence (CDS)

ATGGACAAGATTCGTGAAGGAAACTCTACTACTAGGCCACCATTTCTGGACGGAGGAAACTATGGATACTGGAAAGCACACATGGTTGTGTTACTTATGTCTCTGGACATGAGAAGTTGGAGAGCCATTATTTTAGAATGGGAGCATCCCACTGAAAAGGATGAAATTGGCAAAGTTACTCGAAAATCTAAATTGAAGTGGACAAGTGAAGAAGATGATGCAGCTGTTGGCAACTCACGTGCATTAAATGCATTGTTTAATGTCGTTGATCATAACATGGGATATCCTGAAGGTTGCTTATGA

Protein sequence

MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVTRKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPEGCL
Homology
[Close]
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match: A0A5A7TSC7 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00740 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT
Sbjct: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE 98
          RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE
Sbjct: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE 97

[Close]
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match: A0A5A7TUN3 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00890 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD IREGNSTTRPP LD GNY YWK+HMV  LMSLDMR WRAIIL WEHPTEKDEIGKVT
Sbjct: 1  MDGIREGNSTTRPPLLDRGNYRYWKSHMVAFLMSLDMRCWRAIILGWEHPTEKDEIGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 94
          RKSKLKWTSEEDDAAVGNSRALNALFNVVD N+
Sbjct: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDPNV 93

[Close]
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match: A0A5A7VGN0 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00320 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 75/93 (80.65%), Postives = 81/93 (87.10%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD IREGNSTTRPP LDGGNYGYWK+ M+  LMSLDMRSW+AII  WEHPT+KDE GKVT
Sbjct: 1  MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 94
          RKS+LKW SEEDDA VGNSRALN LFNVVD N+
Sbjct: 61 RKSELKWMSEEDDATVGNSRALNTLFNVVDQNI 93

[Close]
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match: A0A5A7T1U7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001770 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.0e-37
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD I EGNSTTRPP +DGGNYGYWK+ M V LMSLD+RSWRAII  WE+PTEKDE GKVT
Sbjct: 1  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDETGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 94
          RKS+LKWTSEEDD AVGNSRALNALFNVVD N+
Sbjct: 61 RKSELKWTSEEDDVAVGNSRALNALFNVVDQNI 93

[Close]
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match: A0A5A7VDT5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold301G00230 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.4e-36
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD IREGNSTT+PP LDGGNYGYWK  M   LMSLDMR WRAII  WEHPTEKDE GKVT
Sbjct: 1  MDGIREGNSTTKPPLLDGGNYGYWKLGMEAFLMSLDMRCWRAIISGWEHPTEKDETGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 94
          RKS+LKWTSEEDDAAVGNS ALNALFN VD N+
Sbjct: 61 RKSELKWTSEEDDAAVGNSCALNALFNTVDPNI 93

[Close]
BLAST of IVF0005969 vs. NCBI nr
Match: KAA0045046.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ96281.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (529), Expect = 7.44e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT
Sbjct: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE 97
          RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE
Sbjct: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNMGYPE 97

[Close]
BLAST of IVF0005969 vs. NCBI nr
Match: KAA0045095.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 1.19e-53
Identity = 82/93 (88.17%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD IREGNSTTRPP LD GNY YWK+HMV  LMSLDMR WRAIIL WEHPTEKDEIGKVT
Sbjct: 1  MDGIREGNSTTRPPLLDRGNYRYWKSHMVAFLMSLDMRCWRAIILGWEHPTEKDEIGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 93
          RKSKLKWTSEEDDAAVGNSRALNALFNVVD N+
Sbjct: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDPNV 93

[Close]
BLAST of IVF0005969 vs. NCBI nr
Match: KAA0035587.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30951.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (412), Expect = 2.85e-49
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD I EGNSTTRPP +DGGNYGYWK+ M V LMSLD+RSWRAII  WE+PTEKDE GKVT
Sbjct: 1  MDGIHEGNSTTRPPLIDGGNYGYWKSRMEVFLMSLDIRSWRAIISGWENPTEKDETGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 93
          RKS+LKWTSEEDD AVGNSRALNALFNVVD N+
Sbjct: 61 RKSELKWTSEEDDVAVGNSRALNALFNVVDQNI 93

[Close]
BLAST of IVF0005969 vs. NCBI nr
Match: KAA0065350.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 1.02e-48
Identity = 76/93 (81.72%), Postives = 79/93 (84.95%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD IREGNSTT+PP LDGGNYGYWK  M   LMSLDMR WRAII  WEHPTEKDE GKVT
Sbjct: 1  MDGIREGNSTTKPPLLDGGNYGYWKLGMEAFLMSLDMRCWRAIISGWEHPTEKDETGKVT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 93
          RKS+LKWTSEEDDAAVGNS ALNALFN VD N+
Sbjct: 61 RKSELKWTSEEDDAAVGNSCALNALFNTVDPNI 93

[Close]
BLAST of IVF0005969 vs. NCBI nr
Match: KAA0052057.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00672.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 1.36e-47
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 0 

Query: 1  MDKIREGNSTTRPPFLDGGNYGYWKAHMVVLLMSLDMRSWRAIILEWEHPTEKDEIGKVT 60
          MD+IREGNSTTRPP LDGGNYGYWK+ +   LMSLDMR WRAIIL WEH TE DE GK+T
Sbjct: 1  MDEIREGNSTTRPPLLDGGNYGYWKSRVEAFLMSLDMRCWRAIILGWEHLTENDETGKIT 60

Query: 61 RKSKLKWTSEEDDAAVGNSRALNALFNVVDHNM 93
          RKSKLKWTSEE+DAAVGNS ALNALFN +D N+
Sbjct: 61 RKSKLKWTSEENDAAVGNSSALNALFNAIDPNI 93

The following BLAST results are available for this feature:
BLAST of IVF0005969 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0005969 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TSC71.4e-50100.00Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7TUN36.6e-4088.17Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7VGN01.8e-3780.65Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7T1U74.0e-3781.72Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G... [more]
A0A5A7VDT53.4e-3681.72Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold301G... [more]
BLAST of IVF0005969 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045046.17.44e-67100.00gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ96281.1 gag-proteinase... [more]
KAA0045095.11.19e-5388.17Receptor-like protein 12 [Cucumis melo var. makuwa][more]
KAA0035587.12.85e-4981.72gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30951.1 gag-pol polyprotein [... [more]
KAA0065350.11.02e-4881.72gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0052057.11.36e-4778.49gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00672.1 gag-pol polyprotein [... [more]
BLAST of IVF0005969 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005969.2IVF0005969.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0022857 transmembrane transporter activity