IVF0005943 (gene) Melon (IVF77) v1

Overview


Name	IVF0005943
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr09: 15095928 .. 15096362 (+)
RNA-Seq Expression	IVF0005943
Synteny	IVF0005943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATCGATGATATATTAGTTTACTCGGTTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGA

mRNA sequence

ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATCGATGATATATTAGTTTACTCGGTTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGA

Coding sequence (CDS)

ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATCGATGATATATTAGTTTACTCGGTTGACAGAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGA

Protein sequence

MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFE

Homology

[Close]

BLAST of IVF0005943 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-29
Identity = 58/144 (40.28%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGL NAP  F   MN I    L++  +V++DDI+V+S   + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +  PT   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           +FI +F+ +A P+T   +KN K +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKID 477

[Close]

BLAST of IVF0005943 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-28
Identity = 57/144 (39.58%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGL NAP  F   MN I    L++  +V++DDI+++S     H   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++  PT   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           +FI +++ +A P+T+  +K  K +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID 476

[Close]

BLAST of IVF0005943 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-28
Identity = 58/138 (42.03%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           +PFGL NAP +F  +++ I  +++ +   V+IDDI+V+S D + H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           L     K  F   QV FLG++V+  G+  DP+KV A+     PTS  E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRLALPLTALTR 139
           +FI+D++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of IVF0005943 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-23
Identity = 50/138 (36.23%), Postives = 83/138 (60.14%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           +PFGL NA ++F   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           +     K  F+ E V +LG +VS  G   DP+KV+A+  +  P    +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFSRLALPLTALTR 139
            FI+DF+ +A P+T + +
Sbjct: 429 VFIKDFAAIARPITDILK 446

[Close]

BLAST of IVF0005943 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-22
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 48  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTS 107
           HL +VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA 142
            TE+R FLGL GYYRRF++++ ++  PLT L +KN+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

[Close]

BLAST of IVF0005943 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.8e-73
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 744 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 803

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR
Sbjct: 804 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 863

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           RFIEDFS+LALPLTALTRKNAKFE
Sbjct: 864 RFIEDFSQLALPLTALTRKNAKFE 887

[Close]

BLAST of IVF0005943 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.8e-73
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           RFIEDFS+LALPLTALTRKNAKFE
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFE 675

[Close]

BLAST of IVF0005943 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           M FGLTNAP VFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           RFIEDFSRLALPLTALTRKNAKFE
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFE 805

[Close]

BLAST of IVF0005943 vs. ExPASy TrEMBL
Match: A0A5A7T306 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00050 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMD MNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGV VDPQKVEAVVNWERPTSATEVRSFLGLAGYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           RFIEDFSRLALPLTA+TRKNAKFE
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFE 226

[Close]

BLAST of IVF0005943 vs. ExPASy TrEMBL
Match: A0A5D3DZ50 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00500 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPF LTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 453 MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 512

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERPTSATEV SFLGLAGYYR
Sbjct: 513 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 572

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 145
           RFIEDFSRLALPLTALTRKNAKFE
Sbjct: 573 RFIEDFSRLALPLTALTRKNAKFE 596

[Close]

BLAST of IVF0005943 vs. NCBI nr
Match: TYK25908.1 (Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 1.25e-90
Identity = 137/144 (95.14%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQ
Sbjct: 198 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 257

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERP SATEVRSFLGLAGYYR
Sbjct: 258 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 317

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 144
           RFIEDFSRLALPLTALTRKN KFE
Sbjct: 318 RFIEDFSRLALPLTALTRKNVKFE 341

[Close]

BLAST of IVF0005943 vs. NCBI nr
Match: TYK23887.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 1.75e-90
Identity = 137/144 (95.14%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQ
Sbjct: 1   MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 60

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERP SATEVRSFLGLAGYYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 120

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 144
           RFIEDFSRLALPLTALTRKN KFE
Sbjct: 121 RFIEDFSRLALPLTALTRKNVKFE 144

[Close]

BLAST of IVF0005943 vs. NCBI nr
Match: KAA0061419.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 1.14e-89
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPF LTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 1   MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 60

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNWERPTSATEV SFLGLAGYYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 120

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 144
           RFIEDFSRLALPLTALTRKNAKFE
Sbjct: 121 RFIEDFSRLALPLTALTRKNAKFE 144

[Close]

BLAST of IVF0005943 vs. NCBI nr
Match: KAA0032755.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (709), Expect = 4.11e-89
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLR+KQ
Sbjct: 31  MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 90

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEA+VNWERP SATEVRSFLGLAGYYR
Sbjct: 91  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAIVNWERPISATEVRSFLGLAGYYR 150

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 144
           RFIEDFSRLALPLTALTRKN KFE
Sbjct: 151 RFIEDFSRLALPLTALTRKNVKFE 174

[Close]

BLAST of IVF0005943 vs. NCBI nr
Match: KAA0036001.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (718), Expect = 5.39e-89
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPFGLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDREAHEEHLRIVLQTLRDKQ 60
           MPFGLTNAP VFMD MNRIFHQYLDQFVIVFIDDILVYSVDRE+HEEHLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFLGHVVS KGV VDPQKVEAVVNWERPTSATEVRSFLGLAGYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFSRLALPLTALTRKNAKFE 144
           RFIEDFSRLALPLTA+TRKNAKFE
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFE 226

[Close]

BLAST of IVF0005943 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 6.1e-23
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 48  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTS 107
           HL +VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNA 142
            TE+R FLGL GYYRRF++++ ++  PLT L +KN+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of IVF0005943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	9.4e-29	40.28	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.7e-28	39.58	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	4.7e-28	42.03	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	3.5e-23	36.23	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P92523	8.5e-22	48.96	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0005943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA17	3.8e-73	97.22	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BEU1	3.8e-73	97.22	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UBV9	1.1e-72	97.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T306	1.9e-72	95.83	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DZ50	3.2e-72	97.22	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0005943 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25908.1	1.25e-90	95.14	Retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23887.1	1.75e-90	95.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0061419.1	1.14e-89	97.22	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032755.1	4.11e-89	94.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0036001.1	5.39e-89	95.83	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 D...	[more]

BLAST of IVF0005943 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.1e-23	48.96	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.7E-16 score: 60.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 11.663481
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..144 e-value: 1.0E-19 score: 72.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 8.0E-33 score: 115.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 17..140
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 17..140
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.24854E-37 score: 124.63
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005943.2	IVF0005943.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding