IVF0005926 (gene) Melon (IVF77) v1

Overview


Name	IVF0005926
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	E3 ubiquitin-protein ligase ATL42-like
Location	chr02: 16470881 .. 16471345 (-)
RNA-Seq Expression	IVF0005926
Synteny	IVF0005926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGAACACAGAAATGCTTGGGGCCATGTCCAGCAGTAGATTCTCTTCTTTGGAATCAGAAAGCATTCGCCGATCAGCAACAAGAGAAAGAGAGGGCAAAAGGACTTCACAAATTAAGGAAGCGATGGAAATGAAGAGATCATTTGAGAGGAGGATAAGCATAGCTGAGAAAAATAGCTTAGTTTCAATCTCAGGAATTTCATCTACCTCAGATTCTAATGCAAGTACATCAAAGACAACAAATCTTAATGAAAGATCTGTCTCAGACACCACTGCATTTTCAAGATTTGGTTATTTTAATGAGAATGCAATAAGAGACAGTTCTATGATTGAAGCTGATGCAAAAAGTTACAGAATTAGGCAGCTATGGTTGCCAATAGCTAGAAGAACAGTGCAATGGTTTGCCAATAGGGAAGAAAGGTCTCGACTCTCAAAGTACACACAGCAGCCAGATGCATAG

mRNA sequence

ATGTTCTTGAACACAGAAATGCTTGGGGCCATGTCCAGCAGTAGATTCTCTTCTTTGGAATCAGAAAGCATTCGCCGATCAGCAACAAGAGAAAGAGAGGGCAAAAGGACTTCACAAATTAAGGAAGCGATGGAAATGAAGAGATCATTTGAGAGGAGGATAAGCATAGCTGAGAAAAATAGCTTAGTTTCAATCTCAGGAATTTCATCTACCTCAGATTCTAATGCAAGTACATCAAAGACAACAAATCTTAATGAAAGATCTGTCTCAGACACCACTGCATTTTCAAGATTTGGTTATTTTAATGAGAATGCAATAAGAGACAGTTCTATGATTGAAGCTGATGCAAAAAGTTACAGAATTAGGCAGCTATGGTTGCCAATAGCTAGAAGAACAGTGCAATGGTTTGCCAATAGGGAAGAAAGGTCTCGACTCTCAAAGTACACACAGCAGCCAGATGCATAG

Coding sequence (CDS)

ATGTTCTTGAACACAGAAATGCTTGGGGCCATGTCCAGCAGTAGATTCTCTTCTTTGGAATCAGAAAGCATTCGCCGATCAGCAACAAGAGAAAGAGAGGGCAAAAGGACTTCACAAATTAAGGAAGCGATGGAAATGAAGAGATCATTTGAGAGGAGGATAAGCATAGCTGAGAAAAATAGCTTAGTTTCAATCTCAGGAATTTCATCTACCTCAGATTCTAATGCAAGTACATCAAAGACAACAAATCTTAATGAAAGATCTGTCTCAGACACCACTGCATTTTCAAGATTTGGTTATTTTAATGAGAATGCAATAAGAGACAGTTCTATGATTGAAGCTGATGCAAAAAGTTACAGAATTAGGCAGCTATGGTTGCCAATAGCTAGAAGAACAGTGCAATGGTTTGCCAATAGGGAAGAAAGGTCTCGACTCTCAAAGTACACACAGCAGCCAGATGCATAG

Protein sequence

MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLWLPIARRTVQWFANREERSRLSKYTQQPDA

Homology

[Close]

BLAST of IVF0005926 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 1   MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKN 60
           MFLN+EM+ ++SS RFSSL  + ++R    ++ G    +IKE ME KR  E +++     
Sbjct: 281 MFLNSEMVNSISSERFSSL--DHVKRGDEEDQIG--ILRIKEEMEAKRMLENKLT----- 340

Query: 61  SLVSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRF-----GYFNENAIRDSSMIE-- 120
           S+ ++    +    + S S       RSVSD TA  R      G  + +A   +S ++  
Sbjct: 341 SMTTMFSSENGDSGSKSRSVMIEPGRRSVSDITAVPRLSISIHGDCSGSAAETASALQNG 400

Query: 121 ADAKSYRIRQLWLPIARRTVQWFANREERSRLSKYTQQPD 154
            +    R R+LWLPIAR+T QWFANRE+RS+++   Q  D
Sbjct: 401 GNETEERRRRLWLPIARKTAQWFANREKRSQINTTHQHFD 431

[Close]

BLAST of IVF0005926 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 50/154 (32.47%), Postives = 67/154 (43.51%), Query Frame = 0


Query: 2   FLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNS 61
           FL +EML ++SS RFSS+  + + R   R+         KE MEMK     R+ I  K+S
Sbjct: 272 FLTSEMLNSVSSDRFSSV--DRVHRGNLRD---------KEDMEMK-----RMLIKHKDS 331

Query: 62  LVSISGISSTSDSNASTSKTTNLNERSVSDTTAFSR-----FGYFNENAIRDSSMIEADA 121
                                  + R+VS+ T  SR       Y    A    +      
Sbjct: 332 -----------------------SRRTVSEITTVSREKAVGGSYRGSTASTSQNYAVTAT 386

Query: 122 KSYRIRQLWLPIARRTVQWFANREERSRLSKYTQ 151
              R R+LWLPIARRT QWF NRE+ + L+   Q
Sbjct: 392 TEERRRRLWLPIARRTAQWFVNREKSNDLNTTRQ 386

[Close]

BLAST of IVF0005926 vs. ExPASy TrEMBL
Match: A0A5D3DZA7 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00780 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 6   EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI 65
           EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI
Sbjct: 230 EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI 289

Query: 66  SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW 125
           SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW
Sbjct: 290 SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW 349

Query: 126 LPIARRTVQWFANREERSRLSKYTQQPDA 155
           LPIARRTVQWFANREERSRLSKYTQQPDA
Sbjct: 350 LPIARRTVQWFANREERSRLSKYTQQPDA 378

[Close]

BLAST of IVF0005926 vs. ExPASy TrEMBL
Match: A0A1S3CHH4 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500996 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 3   LNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL 62
           +  EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL
Sbjct: 214 IGKEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL 273

Query: 63  VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR 122
           VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR
Sbjct: 274 VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR 333

Query: 123 QLWLPIARRTVQWFANREERSRLSKYTQQPDA 155
           QLWLPIARRTVQWFANREERSRLSKYTQQPDA
Sbjct: 334 QLWLPIARRTVQWFANREERSRLSKYTQQPDA 365

[Close]

BLAST of IVF0005926 vs. ExPASy TrEMBL
Match: A0A6J1CUV0 (E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC111014428 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 119/154 (77.27%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 1   MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKN 60
           MFLNTEMLGAMSS+RFSSL++++IRRS T E E KR S IKE MEMKRSFE RISIAEKN
Sbjct: 259 MFLNTEMLGAMSSNRFSSLDTDNIRRSETGETEDKRISNIKEEMEMKRSFETRISIAEKN 318

Query: 61  SLVSISGISSTSDSNASTSKTTNLNE-RSVSDTTAFSRFGYFNENAIRDSSMIEADAKSY 120
           +L+SI+G+ S SDSNASTS+T NLNE RSVSDTTAFSRFG FNENAIR++S+IE++A+ Y
Sbjct: 319 TLISITGMPSISDSNASTSRTINLNERRSVSDTTAFSRFGNFNENAIRETSVIESNAEDY 378

Query: 121 RIRQLWLPIARRTVQWFANREERSRLSKYTQQPD 154
           RIR++WLPIARRTVQWFANRE R++LSKYTQQPD
Sbjct: 379 RIRKIWLPIARRTVQWFANREHRAQLSKYTQQPD 412

[Close]

BLAST of IVF0005926 vs. ExPASy TrEMBL
Match: A0A6P5ZH95 (E3 ubiquitin-protein ligase ATL42-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111300346 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKN 60
           MFLN+EML  +SS+RFSSLE++ +R + TR  E ++  +IKE ME+KR FER++S   K+
Sbjct: 266 MFLNSEMLNDISSNRFSSLETDDVRFTKTRPIENEQIMKIKEEMEIKRLFERKVSSINKD 325

Query: 61  SLVSISGISSTSDSNASTSKTTNL----NERSVSDTTAFSRF-GYFNENAIRDSSMIEAD 120
           + VS  G+ STS+S A++S T+ +     +RS+S+ TA SRF      N + +SS+ E  
Sbjct: 326 NPVSAPGLPSTSNSAATSSHTSRVVNQAEKRSMSEITAVSRFRDVSTRNRMSESSLSETY 385

Query: 121 AKSYRIRQLWLPIARRTVQWFANREERSRLSKYTQQ 152
            K  RIR+LWLPIARRTVQWFANRE RS+ S+ T Q
Sbjct: 386 TKEERIRRLWLPIARRTVQWFANRERRSQQSQNTTQ 421

[Close]

BLAST of IVF0005926 vs. ExPASy TrEMBL
Match: A0A6P5ZGR3 (E3 ubiquitin-protein ligase ATL42-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111300346 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKN 60
           MFLN+EML  +SS+RFSSLE++ +R + TR  E ++  +IKE ME+KR FER++S   K+
Sbjct: 238 MFLNSEMLNDISSNRFSSLETDDVRFTKTRPIENEQIMKIKEEMEIKRLFERKVSSINKD 297

Query: 61  SLVSISGISSTSDSNASTSKTTNL----NERSVSDTTAFSRF-GYFNENAIRDSSMIEAD 120
           + VS  G+ STS+S A++S T+ +     +RS+S+ TA SRF      N + +SS+ E  
Sbjct: 298 NPVSAPGLPSTSNSAATSSHTSRVVNQAEKRSMSEITAVSRFRDVSTRNRMSESSLSETY 357

Query: 121 AKSYRIRQLWLPIARRTVQWFANREERSRLSKYTQQ 152
            K  RIR+LWLPIARRTVQWFANRE RS+ S+ T Q
Sbjct: 358 TKEERIRRLWLPIARRTVQWFANRERRSQQSQNTTQ 393

[Close]

BLAST of IVF0005926 vs. NCBI nr
Match: XP_008462696.1 (PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo])

HSP 1 Score: 265 bits (678), Expect = 9.14e-86
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 3   LNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL 62
           +  EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL
Sbjct: 214 IGKEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSL 273

Query: 63  VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR 122
           VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR
Sbjct: 274 VSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIR 333

Query: 123 QLWLPIARRTVQWFANREERSRLSKYTQQPDA 154
           QLWLPIARRTVQWFANREERSRLSKYTQQPDA
Sbjct: 334 QLWLPIARRTVQWFANREERSRLSKYTQQPDA 365

[Close]

BLAST of IVF0005926 vs. NCBI nr
Match: KAA0046520.1 (E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa] >TYK28739.1 E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 1.92e-85
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 6   EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI 65
           EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI
Sbjct: 230 EMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNSLVSI 289

Query: 66  SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW 125
           SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW
Sbjct: 290 SGISSTSDSNASTSKTTNLNERSVSDTTAFSRFGYFNENAIRDSSMIEADAKSYRIRQLW 349

Query: 126 LPIARRTVQWFANREERSRLSKYTQQPDA 154
           LPIARRTVQWFANREERSRLSKYTQQPDA
Sbjct: 350 LPIARRTVQWFANREERSRLSKYTQQPDA 378

[Close]

BLAST of IVF0005926 vs. NCBI nr
Match: XP_031738779.1 (putative RING-H2 finger protein ATL12 [Cucumis sativus] >KAE8652892.1 hypothetical protein Csa_022677 [Cucumis sativus])

HSP 1 Score: 240 bits (613), Expect = 3.10e-75
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 2   FLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNS 61
           FLNTEMLG MSS+RFSSL+SESI +SATRE+EGK+TSQIKE MEMKRSFERRISIAEKNS
Sbjct: 268 FLNTEMLGVMSSNRFSSLDSESISQSATREKEGKKTSQIKEEMEMKRSFERRISIAEKNS 327

Query: 62  LVSISGISSTS-DSNASTSKTTNLNER-SVSDTTAFSRFGYFNENAIRDSSMIEADAKSY 121
           LVSISGISSTS DSNASTS+TT LNER SVSDTTAFSRFGYFNENA RDSSMIEADAKS+
Sbjct: 328 LVSISGISSTSSDSNASTSRTTILNERRSVSDTTAFSRFGYFNENATRDSSMIEADAKSF 387

Query: 122 RIRQLWLPIARRTVQWFANREERSRLSKYTQQPDA 154
           RIRQLWLPIARRTVQWFANRE+R RLSKYTQQPDA
Sbjct: 388 RIRQLWLPIARRTVQWFANREQRFRLSKYTQQPDA 422

[Close]

BLAST of IVF0005926 vs. NCBI nr
Match: KAE8647036.1 (hypothetical protein Csa_023000 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 4.83e-75
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 2   FLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNS 61
           FLNTEMLG MSS+RFSSL+SESI +SATRE+EGK+TSQIKE MEMKRSFERRISIAEKNS
Sbjct: 222 FLNTEMLGVMSSNRFSSLDSESISQSATREKEGKKTSQIKEEMEMKRSFERRISIAEKNS 281

Query: 62  LVSISGISSTS-DSNASTSKTTNLNER-SVSDTTAFSRFGYFNENAIRDSSMIEADAKSY 121
           LVSISGISSTS D NASTS+TT LNER SVSDTTAFSRFGYFNENA RDSSMIEADAKS+
Sbjct: 282 LVSISGISSTSSDPNASTSRTTILNERRSVSDTTAFSRFGYFNENATRDSSMIEADAKSF 341

Query: 122 RIRQLWLPIARRTVQWFANREERSRLSKYTQQPDA 154
           RIRQLWLPIARRTVQWFANRE+R RLSKYTQQPDA
Sbjct: 342 RIRQLWLPIARRTVQWFANREQRFRLSKYTQQPDA 376

[Close]

BLAST of IVF0005926 vs. NCBI nr
Match: XP_031742649.1 (E3 ubiquitin-protein ligase ATL42-like, partial [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 1.26e-74
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 2   FLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNS 61
           FLNTEMLG MSS+RFSSL+SESI +SATRE+EGK+TSQIKE MEMKRSFERRISIAEKNS
Sbjct: 256 FLNTEMLGVMSSNRFSSLDSESISQSATREKEGKKTSQIKEEMEMKRSFERRISIAEKNS 315

Query: 62  LVSISGISSTS-DSNASTSKTTNLNER-SVSDTTAFSRFGYFNENAIRDSSMIEADAKSY 121
           LVSISGISSTS D NASTS+TT LNER SVSDTTAFSRFGYFNENA RDSSMIEADAKS+
Sbjct: 316 LVSISGISSTSSDPNASTSRTTILNERRSVSDTTAFSRFGYFNENATRDSSMIEADAKSF 375

Query: 122 RIRQLWLPIARRTVQWFANREERSRLSKYTQQPDA 154
           RIRQLWLPIARRTVQWFANRE+R RLSKYTQQPDA
Sbjct: 376 RIRQLWLPIARRTVQWFANREQRFRLSKYTQQPDA 410

[Close]

BLAST of IVF0005926 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-12
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 1   MFLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKN 60
           MFLN+EM+ ++SS RFSSL  + ++R    ++ G    +IKE ME KR  E +++     
Sbjct: 281 MFLNSEMVNSISSERFSSL--DHVKRGDEEDQIG--ILRIKEEMEAKRMLENKLT----- 340

Query: 61  SLVSISGISSTSDSNASTSKTTNLNERSVSDTTAFSRF-----GYFNENAIRDSSMIE-- 120
           S+ ++    +    + S S       RSVSD TA  R      G  + +A   +S ++  
Sbjct: 341 SMTTMFSSENGDSGSKSRSVMIEPGRRSVSDITAVPRLSISIHGDCSGSAAETASALQNG 400

Query: 121 ADAKSYRIRQLWLPIARRTVQWFANREERSRLSKYTQQPD 154
            +    R R+LWLPIAR+T QWFANRE+RS+++   Q  D
Sbjct: 401 GNETEERRRRLWLPIARKTAQWFANREKRSQINTTHQHFD 431

[Close]

BLAST of IVF0005926 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-06
Identity = 50/154 (32.47%), Postives = 67/154 (43.51%), Query Frame = 0


Query: 2   FLNTEMLGAMSSSRFSSLESESIRRSATREREGKRTSQIKEAMEMKRSFERRISIAEKNS 61
           FL +EML ++SS RFSS+  + + R   R+         KE MEMK     R+ I  K+S
Sbjct: 272 FLTSEMLNSVSSDRFSSV--DRVHRGNLRD---------KEDMEMK-----RMLIKHKDS 331

Query: 62  LVSISGISSTSDSNASTSKTTNLNERSVSDTTAFSR-----FGYFNENAIRDSSMIEADA 121
                                  + R+VS+ T  SR       Y    A    +      
Sbjct: 332 -----------------------SRRTVSEITTVSREKAVGGSYRGSTASTSQNYAVTAT 386

Query: 122 KSYRIRQLWLPIARRTVQWFANREERSRLSKYTQ 151
              R R+LWLPIARRT QWF NRE+ + L+   Q
Sbjct: 392 TEERRRRLWLPIARRTAQWFVNREKSNDLNTTRQ 386

The following BLAST results are available for this feature:

BLAST of IVF0005926 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XF85	1.2e-10	36.25	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q9SL78	1.0e-04	32.47	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]

BLAST of IVF0005926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZA7	1.8e-68	100.00	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CHH4	1.8e-68	98.03	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500996 P...	[more]
A0A6J1CUV0	1.8e-52	77.27	E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6P5ZH95	1.2e-24	50.64	E3 ubiquitin-protein ligase ATL42-like isoform X1 OS=Durio zibethinus OX=66656 G...	[more]
A0A6P5ZGR3	1.2e-24	50.64	E3 ubiquitin-protein ligase ATL42-like isoform X2 OS=Durio zibethinus OX=66656 G...	[more]

BLAST of IVF0005926 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462696.1	9.14e-86	98.03	PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo]	[more]
KAA0046520.1	1.92e-85	100.00	E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa] >TYK28739.1 E3...	[more]
XP_031738779.1	3.10e-75	89.68	putative RING-H2 finger protein ATL12 [Cucumis sativus] >KAE8652892.1 hypothetic...	[more]
KAE8647036.1	4.83e-75	89.03	hypothetical protein Csa_023000 [Cucumis sativus]	[more]
XP_031742649.1	1.26e-74	89.03	E3 ubiquitin-protein ligase ATL42-like, partial [Cucumis sativus]	[more]

BLAST of IVF0005926 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28890.1	8.8e-12	36.25	RING/U-box superfamily protein	[more]
AT2G20030.1	7.2e-06	32.47	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	PANTHER	PTHR46539:SF1	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 1..146
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005926.1	IVF0005926.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane