Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGGCCCGCCCTACAGTGGTTTTGGCTACAACGATGAATTGAAGTGCATCATTGTCGAAAAGGATGTATTCGATAATTGGATGAAAGTACGCTATTTCTTGTCTTTTGCATTACTCTTTTATAATCAAAGATAAACTAACTCCATCCACTTTAACACTTCAACAGAGTCATCCTGCTATGAAGGACCTACTAAACAGATCCTTTCTCCATTACGACGACCTTTCCTATGTCTTTGGGAGAGACCGTGTGACGGGAGGGCGCTTAGAGATATTTACGGATGTGGGGTAGAATGTCCATTTCAGGTACGAGGGATTTGCCATTGGCGATGGCAATGATATGGAGATCCCTATTATGTTTAGTCAAGGACTAAACATGTTGCTTGGTGAATTTATGGGCAGTCGACCTGAGCGGTCAGGTGACAGTAGGAATGCTTCAAGTGGGTCAAAGAGGAAGAGACCGTGACTAGCCTGTAGAGACCGCAGACATAATTTCAAATGCCATAGAGTGTGCCAATGACCAGCTCAACTGCATTGCAGAATGGTCGATCTTAAGGAATCAAGATGCAAGCGCGACACGACAGGAGGTTGTTCAACAATTATAGGTCGTCCCCAAACTTACTAAAATCGACAGGTGTCGCTGTATGCATGTCTTGATGCATAATATTGATGACATGAAAGCATTCCTTGTTGTACCTGATGAGCTGAAGTTTGACTACTGTATGATGATTCTCCAAGAAAATCCATGA
mRNA sequence
ATGCGCGGCCCGCCCTACAGTGGTTTTGGCTACAACGATGAATTGAAGTGCATCATTGTCGAAAAGGATGTATTCGATAATTGGATGAAAAGTCATCCTGCTATGAAGGACCTACTAAACAGATCCTTTCTCCATTACGACGACCTTTCCTATGTCTTTGGGAGAGACCGTAATGTCCATTTCAGGTACGAGGGATTTGCCATTGGCGATGGCAATGATATGGAGATCCCTATTATGTTTAGTCAAGGACTAAACATCGGTCAGGTGACAGTAGGAATGCTTCAAGTCGTCCCCAAACTTACTAAAATCGACAGGTGTCGCTGTATGCATGTCTTGATGCATAATATTGATGACATGAAAGCATTCCTTGTTGTACCTGATGAGCTGAAGTTTGACTACTGTATGATGATTCTCCAAGAAAATCCATGA
Coding sequence (CDS)
ATGCGCGGCCCGCCCTACAGTGGTTTTGGCTACAACGATGAATTGAAGTGCATCATTGTCGAAAAGGATGTATTCGATAATTGGATGAAAAGTCATCCTGCTATGAAGGACCTACTAAACAGATCCTTTCTCCATTACGACGACCTTTCCTATGTCTTTGGGAGAGACCGTAATGTCCATTTCAGGTACGAGGGATTTGCCATTGGCGATGGCAATGATATGGAGATCCCTATTATGTTTAGTCAAGGACTAAACATCGGTCAGGTGACAGTAGGAATGCTTCAAGTCGTCCCCAAACTTACTAAAATCGACAGGTGTCGCTGTATGCATGTCTTGATGCATAATATTGATGACATGAAAGCATTCCTTGTTGTACCTGATGAGCTGAAGTTTGACTACTGTATGATGATTCTCCAAGAAAATCCATGA
Protein sequence
MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVHFRYEGFAIGDGNDMEIPIMFSQGLNIGQVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDELKFDYCMMILQENP
Homology
BLAST of IVF0005888 vs. ExPASy TrEMBL
Match:
A0A5D3D7X4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00510 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 8.7e-38
Identity = 87/174 (50.00%), Postives = 107/174 (61.49%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
M GP SGFG NDE KCI+ EK+VFD+W+KSHPAMK LLN+SFLHYD LSYVFG+DR
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGKDRATG 283
Query: 61 FRYEGFA-IGDGN-------------DMEIPIMFSQGLNI-------------------G 120
R E FA +G + D + P M+SQGLN+
Sbjct: 284 GRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDASQTR 343
Query: 121 QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDELKFDYCMMILQEN 142
Q V L+ +P+LT +DRCR M +LM N+DDMKAFL VPD +K+ YC +I QEN
Sbjct: 344 QEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSIIFQEN 397
BLAST of IVF0005888 vs. ExPASy TrEMBL
Match:
A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)
HSP 1 Score: 164.5 bits (415), Expect = 3.3e-37
Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDR--- 60
MRGP SGFG+NDE KCI+VEK+VFD+W+KSHP K LLN+SF HYD+LSY+FG+DR
Sbjct: 83 MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGKDRAMG 142
Query: 61 -----------NVHFRYEGFAIGDGNDMEIPIMFSQGLNIG------------------- 120
N RYE F +D M+SQGL++
Sbjct: 143 GRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEDASQT 202
Query: 121 -QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDELKFDYCMMILQEN 142
Q V L+V+P+LT +DRC M +LM N+DDMKAFL VPD +K+ YC ILQEN
Sbjct: 203 RQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257
BLAST of IVF0005888 vs. ExPASy TrEMBL
Match:
A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 79/193 (40.93%), Postives = 103/193 (53.37%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MRGP GFG+NDE KCI+ EK+VFD+W+KSHP K LLN+ F HYD+L YVFG+DR +
Sbjct: 83 MRGPTCIGFGWNDEQKCIVAEKEVFDDWVKSHPVAKGLLNKLFPHYDELLYVFGKDRVME 142
Query: 61 FR--------------YEGFAIGDGNDMEIPIMFSQGLNIG------------------- 120
R YE F +D + +M+SQGLN+
Sbjct: 143 GRTETFTNVGSNDLAGYEAFVADATSDTDFQLMYSQGLNMSLDELMETRTPRVSEGRYVS 202
Query: 121 -------------------QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDE 142
Q V L+ +P+LT +DRC M +LM N+D+MKAFL VPD
Sbjct: 203 SGSKRKRGGQAADNASQTRQKVVRQLEAIPELTLMDRCHLMRILMRNVDNMKAFLDVPDN 262
BLAST of IVF0005888 vs. ExPASy TrEMBL
Match:
A0A5A7VFF1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G002210 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 3.2e-32
Identity = 84/197 (42.64%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MRGP SGFG+NDE KCI+ EK+V DNW+KSH A K LLN+SF HYD+LSYVFG+DR
Sbjct: 83 MRGPTCSGFGWNDEQKCIVAEKEVLDNWVKSHTAAKGLLNKSFSHYDELSYVFGKDRATG 142
Query: 61 FRYEGFA-IGDGN-------------DMEIPIMF----------SQGLNIG--------- 120
R E FA +G N D + M+ Q + G
Sbjct: 143 GRAESFADVGSNNPAGYEPFVVDATPDTDFQPMYVSSGSKRKRKGQAADSGDILRTAIEY 202
Query: 121 -----------------------QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLV 142
Q V L +P+LT +DRCR M +LMHN+DDMKAFL
Sbjct: 203 GNEQLNRIAKWLVLQRQDASQTRQEVVRQLDAIPELTLMDRCRLMRILMHNVDDMKAFLE 262
BLAST of IVF0005888 vs. ExPASy TrEMBL
Match:
A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 5.5e-32
Identity = 86/221 (38.91%), Postives = 108/221 (48.87%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MR P SGFG+NDE KCII EK+VFD+W+KSHPA K LLN+SF+HYD+LSYVFG+DR
Sbjct: 33 MRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 92
Query: 61 FRYEGFA-IGDGN-------------DMEIPIMFSQGLNIG------------------- 120
R E FA IG + D + P M+S GLN+
Sbjct: 93 GRAESFADIGSNDPAGYDAFAADTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 152
Query: 121 -----------------------------------------------QVTVGMLQVVPKL 142
Q V L+ +P+L
Sbjct: 153 SGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPEL 212
BLAST of IVF0005888 vs. NCBI nr
Match:
TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (409), Expect = 1.15e-46
Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDR--- 60
MRGP SGFG+NDE KCI+VEK+VFD+W+KSHP K LLN+SF HYD+LSY+FG+DR
Sbjct: 83 MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGKDRAMG 142
Query: 61 -----------NVHFRYEGFAIGDGNDMEIPIMFSQGLNIG------------------- 120
N RYE F +D M+SQGL++
Sbjct: 143 GRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEDASQT 202
Query: 121 -QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDELKFDYCMMILQEN 141
Q V L+V+P+LT +DRC M +LM N+DDMKAFL VPD +K+ YC ILQEN
Sbjct: 203 RQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257
BLAST of IVF0005888 vs. NCBI nr
Match:
TYK19659.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 164 bits (414), Expect = 6.38e-46
Identity = 87/174 (50.00%), Postives = 105/174 (60.34%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
M GP SGFG NDE KCI+ EK+VFD+W+KSHPAMK LLN+SFLHYD LSYVFG+DR
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGKDRATG 283
Query: 61 FRYEGFAIGDGNDM--------------EIPIMFSQGLNI-------------------G 120
R E FA ND + P M+SQGLN+
Sbjct: 284 GRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDASQTR 343
Query: 121 QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDELKFDYCMMILQEN 141
Q V L+ +P+LT +DRCR M +LM N+DDMKAFL VPD +K+ YC +I QEN
Sbjct: 344 QEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSIIFQEN 397
BLAST of IVF0005888 vs. NCBI nr
Match:
KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 146 bits (369), Expect = 1.94e-40
Identity = 79/193 (40.93%), Postives = 103/193 (53.37%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MRGP GFG+NDE KCI+ EK+VFD+W+KSHP K LLN+ F HYD+L YVFG+DR +
Sbjct: 83 MRGPTCIGFGWNDEQKCIVAEKEVFDDWVKSHPVAKGLLNKLFPHYDELLYVFGKDRVME 142
Query: 61 FR--------------YEGFAIGDGNDMEIPIMFSQGLNIG------------------- 120
R YE F +D + +M+SQGLN+
Sbjct: 143 GRTETFTNVGSNDLAGYEAFVADATSDTDFQLMYSQGLNMSLDELMETRTPRVSEGRYVS 202
Query: 121 -------------------QVTVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLVVPDE 141
Q V L+ +P+LT +DRC M +LM N+D+MKAFL VPD
Sbjct: 203 SGSKRKRGGQAADNASQTRQKVVRQLEAIPELTLMDRCHLMRILMRNVDNMKAFLDVPDN 262
BLAST of IVF0005888 vs. NCBI nr
Match:
KAA0064259.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 145 bits (366), Expect = 6.06e-40
Identity = 83/197 (42.13%), Postives = 103/197 (52.28%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MRGP SGFG+NDE KCI+ EK+V DNW+KSH A K LLN+SF HYD+LSYVFG+DR
Sbjct: 83 MRGPTCSGFGWNDEQKCIVAEKEVLDNWVKSHTAAKGLLNKSFSHYDELSYVFGKDRATG 142
Query: 61 FRYEGFA-IGDGN-------------DMEIPIMF----------SQGLNIGQV------- 120
R E FA +G N D + M+ Q + G +
Sbjct: 143 GRAESFADVGSNNPAGYEPFVVDATPDTDFQPMYVSSGSKRKRKGQAADSGDILRTAIEY 202
Query: 121 -------------------------TVGMLQVVPKLTKIDRCRCMHVLMHNIDDMKAFLV 141
V L +P+LT +DRCR M +LMHN+DDMKAFL
Sbjct: 203 GNEQLNRIAKWLVLQRQDASQTRQEVVRQLDAIPELTLMDRCRLMRILMHNVDDMKAFLE 262
BLAST of IVF0005888 vs. NCBI nr
Match:
KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 144 bits (364), Expect = 6.19e-40
Identity = 86/221 (38.91%), Postives = 108/221 (48.87%), Query Frame = 0
Query: 1 MRGPPYSGFGYNDELKCIIVEKDVFDNWMKSHPAMKDLLNRSFLHYDDLSYVFGRDRNVH 60
MR P SGFG+NDE KCII EK+VFD+W+KSHPA K LLN+SF+HYD+LSYVFG+DR
Sbjct: 33 MRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 92
Query: 61 FRYEGFA-IGDGN-------------DMEIPIMFSQGLNIG------------------- 120
R E FA IG + D + P M+S GLN+
Sbjct: 93 GRAESFADIGSNDPAGYDAFAADTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 152
Query: 121 -----------------------------------------------QVTVGMLQVVPKL 141
Q V L+ +P+L
Sbjct: 153 SGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPEL 212
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D7X4 | 8.7e-38 | 50.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C1J4 | 3.3e-37 | 48.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CHG6 | 1.4e-32 | 40.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VFF1 | 3.2e-32 | 42.64 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7U4M2 | 5.5e-32 | 38.91 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK05687.1 | 1.15e-46 | 48.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK19659.1 | 6.38e-46 | 50.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0037854.1 | 1.94e-40 | 40.93 | retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p... | [more] |
KAA0064259.1 | 6.06e-40 | 42.13 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0050782.1 | 6.19e-40 | 38.91 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |