IVF0005831 (gene) Melon (IVF77) v1

Overview
NameIVF0005831
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr12: 13366705 .. 13367211 (+)
RNA-Seq ExpressionIVF0005831
SyntenyIVF0005831
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGGTTTGCACATTTTCTATTCTTAAATTTTTTTTTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTGCAGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

mRNA sequence

ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

Coding sequence (CDS)

ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

Protein sequence

MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE
Homology
BLAST of IVF0005831 vs. ExPASy TrEMBL
Match: A0A5D3E6F4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00890 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.8e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 60
           MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE
Sbjct: 10  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 69

Query: 61  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP 120
           SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP
Sbjct: 70  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP 129

Query: 121 HAIDSTIEEV 131
           HAIDSTIEEV
Sbjct: 130 HAIDSTIEEV 139

BLAST of IVF0005831 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.6e-53
Identity = 113/144 (78.47%), Postives = 120/144 (83.33%), Query Frame = 0

Query: 1   MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 60
           MR GTYFEDN HHLVSS IP  SQPKL KN+G+NLGGKEIRLVE MA TL+EEI EHKDE
Sbjct: 1   MRHGTYFEDNIHHLVSSTIPPPSQPKLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDE 60

Query: 61  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLT 120
           SDSSKSDRHWKRPL KAKVSGDD D RG     VPNV PLSPLNAHLEGL+EL SD+SLT
Sbjct: 61  SDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLT 120

Query: 121 GPHAIDSTIEEVGTSKTPASKPTE 143
           GP+A+DSTIE VGT KT  SKP E
Sbjct: 121 GPYAVDSTIEGVGTLKTTVSKPIE 144

BLAST of IVF0005831 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.6e-53
Identity = 110/143 (76.92%), Postives = 121/143 (84.62%), Query Frame = 0

Query: 2   RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDES 61
           + GTYFEDN+HHLVSS+IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+ EHKDES
Sbjct: 214 KHGTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDES 273

Query: 62  DSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLSPLNAHLEGLIELGSDESLTG 121
           DSSKSDRHWKRPL KAKVSGD  D RG    EVP+V PLSPLN HLEGLIE  SDESLTG
Sbjct: 274 DSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTG 333

Query: 122 PHAIDSTIEEVGTSKTPASKPTE 143
           PHA+DS  EEVGTS+TP +KPTE
Sbjct: 334 PHAVDSAFEEVGTSRTPVNKPTE 356

BLAST of IVF0005831 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 110/144 (76.39%), Postives = 120/144 (83.33%), Query Frame = 0

Query: 1   MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 60
           MR  TYFE+N+HHLVSS IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+NEHKDE
Sbjct: 219 MRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDE 278

Query: 61  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLT 120
           SDSSKSDRHWKRPL KAKVSGD+ D RG     VP+V PLSPLN HLEGLI L SDESL 
Sbjct: 279 SDSSKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLNDHLEGLIALDSDESLM 338

Query: 121 GPHAIDSTIEEVGTSKTPASKPTE 143
           GPHA+DS  EEVGTSKTP +KPTE
Sbjct: 339 GPHAVDSAFEEVGTSKTPVNKPTE 362

BLAST of IVF0005831 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 109/143 (76.22%), Postives = 119/143 (83.22%), Query Frame = 0

Query: 2   RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDES 61
           + GTYFEDN+HHLVSS IP  SQP+L KN+G+NLGGKEIRLVEAMA  LEEE+ E KDES
Sbjct: 533 KHGTYFEDNRHHLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDES 592

Query: 62  DSSKSDRHWKRPLNKAKVSGDDLDRRG--PREVPNVSPLSPLNAHLEGLIELGSDESLTG 121
           DSSKSDRHWKRPL KAKVSGD  D RG    EVP+V PLSPLN HLEGLIE  SDESLTG
Sbjct: 593 DSSKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDESLTG 652

Query: 122 PHAIDSTIEEVGTSKTPASKPTE 143
           PHA+DS  EEVGTS+TP +KPTE
Sbjct: 653 PHAVDSAFEEVGTSRTPVNKPTE 675

BLAST of IVF0005831 vs. NCBI nr
Match: KAA0035658.1 (hypothetical protein E6C27_scaffold285G003540 [Cucumis melo var. makuwa] >TYK30885.1 hypothetical protein E5676_scaffold455G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (664), Expect = 3.10e-86
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query: 1   MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 60
           MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE
Sbjct: 10  MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 69

Query: 61  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP 120
           SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP
Sbjct: 70  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGP 129

Query: 121 HAIDSTIEEV 130
           HAIDSTIEEV
Sbjct: 130 HAIDSTIEEV 139

BLAST of IVF0005831 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (549), Expect = 1.21e-66
Identity = 113/144 (78.47%), Postives = 120/144 (83.33%), Query Frame = 0

Query: 1   MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDE 60
           MR GTYFEDN HHLVSS IP  SQPKL KN+G+NLGGKEIRLVE MA TL+EEI EHKDE
Sbjct: 1   MRHGTYFEDNIHHLVSSTIPPPSQPKLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDE 60

Query: 61  SDSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLT 120
           SDSSKSDRHWKRPL KAKVSGDD D RG     VPNV PLSPLNAHLEGL+EL SD+SLT
Sbjct: 61  SDSSKSDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLT 120

Query: 121 GPHAIDSTIEEVGTSKTPASKPTE 142
           GP+A+DSTIE VGT KT  SKP E
Sbjct: 121 GPYAVDSTIEGVGTLKTTVSKPIE 144

BLAST of IVF0005831 vs. NCBI nr
Match: KAA0052877.1 (hypothetical protein E6C27_scaffold1184G00090 [Cucumis melo var. makuwa] >TYK14483.1 hypothetical protein E5676_scaffold186G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (529), Expect = 8.79e-65
Identity = 107/137 (78.10%), Postives = 119/137 (86.86%), Query Frame = 0

Query: 6   YFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSK 65
           YFE+N+HHLVSS+IP  SQ KL KN+G+NLGGKEIRLVEA+A TLEEEI EHKD+SD SK
Sbjct: 3   YFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSK 62

Query: 66  SDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLTGPHAI 125
           SDRHWKRPL K KVS DDLD +G     VP+VSPLSPLNAH +GLIELGSDESL GP+A+
Sbjct: 63  SDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAV 122

Query: 126 DSTIEEVGTSKTPASKP 140
           DSTIEEVGTSKTPASKP
Sbjct: 123 DSTIEEVGTSKTPASKP 139

BLAST of IVF0005831 vs. NCBI nr
Match: KAA0062878.1 (hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 2.19e-64
Identity = 110/143 (76.92%), Postives = 117/143 (81.82%), Query Frame = 0

Query: 2   RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDES 61
           R  TYFEDN HHLVSSIIP  SQPKL KNQG+NL GKEI LVEAMA TLE+E+ EHKDES
Sbjct: 34  RHETYFEDNIHHLVSSIIPPPSQPKLPKNQGSNLSGKEICLVEAMAPTLEKEVKEHKDES 93

Query: 62  DSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLTG 121
           DSSKSDRHWKRPL KAKVSGDD D  G     VP+V PLSPLN HLEGLIEL SDE LTG
Sbjct: 94  DSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLNDHLEGLIELDSDECLTG 153

Query: 122 PHAIDSTIEEVGTSKTPASKPTE 142
           PHA++ST EEVGTSKTP +KP E
Sbjct: 154 PHAVNSTFEEVGTSKTPVTKPAE 176

BLAST of IVF0005831 vs. NCBI nr
Match: TYK22511.1 (hypothetical protein E5676_scaffold387G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 2.19e-64
Identity = 110/143 (76.92%), Postives = 117/143 (81.82%), Query Frame = 0

Query: 2   RQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDES 61
           R  TYFEDN HHLVSSIIP  SQPKL KNQG+NL GKEI LVEAMA TLE+E+ EHKDES
Sbjct: 34  RHETYFEDNIHHLVSSIIPPPSQPKLPKNQGSNLSGKEICLVEAMAPTLEKEVKEHKDES 93

Query: 62  DSSKSDRHWKRPLNKAKVSGDDLDRRGPRE--VPNVSPLSPLNAHLEGLIELGSDESLTG 121
           DSSKSDRHWKRPL KAKVSGDD D  G     VP+V PLSPLN HLEGLIEL SDE LTG
Sbjct: 94  DSSKSDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLNDHLEGLIELDSDECLTG 153

Query: 122 PHAIDSTIEEVGTSKTPASKPTE 142
           PHA++ST EEVGTSKTP +KP E
Sbjct: 154 PHAVNSTFEEVGTSKTPVTKPAE 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E6F45.8e-66100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCT19.6e-5378.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SQC99.6e-5376.92PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7UVX01.4e-5176.39PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7TX421.8e-5176.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0035658.13.10e-86100.00hypothetical protein E6C27_scaffold285G003540 [Cucumis melo var. makuwa] >TYK308... [more]
KAA0054388.11.21e-6678.47hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681... [more]
KAA0052877.18.79e-6578.10hypothetical protein E6C27_scaffold1184G00090 [Cucumis melo var. makuwa] >TYK144... [more]
KAA0062878.12.19e-6476.92hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa][more]
TYK22511.12.19e-6476.92hypothetical protein E5676_scaffold387G00090 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005831.1IVF0005831.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane