IVF0005751 (gene) Melon (IVF77) v1

Overview
NameIVF0005751
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionAT-hook motif nuclear-localized protein 20-like
Locationtig00000135: 1132755 .. 1133148 (+)
RNA-Seq ExpressionIVF0005751
SyntenyIVF0005751
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTCTTCAACTCTTGCGTTTACCCACTTGGATCTACACAAAACAGGAAAAGAAAAAATGTCCGATGCAGAGAGAAAAACTGCCAACCCTGCGCCCACGAGGCTGCAGAGCCAGGCTCCGGCATCGATCGAGATAAAGAGGGTGCTGGATTGGAACGTGGTTATACCATTATTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGGGCCAGAGAAAGTGTTGTCAATGGCTGATAATAATGCGAGGGAGGAAAACAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACGCCTTTGTGCCTGTGTGAATATTTCGTTTCTTCTCTTTTAACAATTATTGTTCTGCTTAA

mRNA sequence

AACTTCTTCAACTCTTGCGTTTACCCACTTGGATCTACACAAAACAGGAAAAGAAAAAATGTCCGATGCAGAGAGAAAAACTGCCAACCCTGCGCCCACGAGGCTGCAGAGCCAGGCTCCGGCATCGATCGAGATAAAGAGGGTGCTGGATTGGAACGTGGTTATACCATTATTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGGGCCAGAGAAAGTGTTGTCAATGGCTGATAATAATGCGAGGGAGGAAAACAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACGCCTTTGTGCCTGTGTGAATATTTCGTTTCTTCTCTTTTAACAATTATTGTTCTGCTTAA

Coding sequence (CDS)

ATGTCCGATGCAGAGAGAAAAACTGCCAACCCTGCGCCCACGAGGCTGCAGAGCCAGGCTCCGGCATCGATCGAGATAAAGAGGGTGCTGGATTGGAACGTGGTTATACCATTATTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGGGCCAGAGAAAGTGTTGTCAATGGCTGATAATAATGCGAGGGAGGAAAACAAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACGCCTTTGTGCCTGTGTGA

Protein sequence

MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMADNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV
Homology
BLAST of IVF0005751 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.8e-06
Identity = 35/88 (39.77%), Postives = 45/88 (51.14%), Query Frame = 0

Query: 14  TRLQSQAPA-SIEIKRVLDWNVVIPLLSPLVS--PSSCGNSGPEKVLSMADNNAREE-NK 73
           ++LQ +AP+  I+     +WNV IPLLSPL     SS   S      +  +    EE  K
Sbjct: 38  SQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPVEEEVKK 97

Query: 74  GLTFTKWQHPAAPFYYEPVPRANAFVPV 98
              F KWQHPA+PF YEP      F+ V
Sbjct: 98  TPVFKKWQHPASPFCYEPTTFVPPFIQV 125

BLAST of IVF0005751 vs. ExPASy TrEMBL
Match: A0A5D3D1A6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001320 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.3e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA
Sbjct: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 98
          DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV
Sbjct: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97

BLAST of IVF0005751 vs. ExPASy TrEMBL
Match: A0A0A0L8D3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MSDAERKTANP-APTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSM 60
          MSDAERKTA   APTRLQSQAPASIEIKR L+WNV IPLLSPLVSPSSCGNS PEK+LSM
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 ADNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 98
          A+NNAREE KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

BLAST of IVF0005751 vs. ExPASy TrEMBL
Match: A0A6J1E8H9 (AT-hook motif nuclear-localized protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111431828 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-19
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          M+ +ER+  N  PTRLQSQAPASI I R  +WNV IPLL+PLVS S CGNS  + VL M 
Sbjct: 1  MAGSERR--NTPPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSS-QDVLLMG 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEP 88
          +N AREE KGL  TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLNVTKWQHPACPFLANP 84

BLAST of IVF0005751 vs. ExPASy TrEMBL
Match: A0A6J1CRZ0 (uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111013769 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 57/106 (53.77%), Postives = 68/106 (64.15%), Query Frame = 0

Query: 1   MSDAERKTANPA----PTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKV 60
           M DAER+ A  +     TRLQ +AP+SI+I R   WNV IPLLSPLVSP        E+V
Sbjct: 1   MGDAERRGAGDSVSQEATRLQRRAPSSIQISRPASWNVAIPLLSPLVSPCL------EQV 60

Query: 61  -LSMADNNAREE----NKGLTFTKWQHPAAPFYYEPVPRANAFVPV 98
            + M +N AREE    +K  TFT+W+HPAAPFYY PV R   FVPV
Sbjct: 61  DVLMGENKAREEARSRDKPATFTRWKHPAAPFYYGPVQRTTPFVPV 100

BLAST of IVF0005751 vs. ExPASy TrEMBL
Match: A0A2P5A713 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.9e-16
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 13  PTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMADNNAREE----- 72
           P+RLQ +APAS++I  V DWNV IPLLSPL SPS    S P+ +   A+N +RE+     
Sbjct: 17  PSRLQRRAPASLQISPVSDWNVAIPLLSPLASPS----SSPKALDRTAENKSREDQRRLV 76

Query: 73  ---NKGLTFTKWQHPAAPFYYEPVPRANAFVPV 98
              +K + F KWQHPAAPF YEP P    FVPV
Sbjct: 77  AEPDKPIVFKKWQHPAAPFCYEPAPLVRPFVPV 105

BLAST of IVF0005751 vs. NCBI nr
Match: KAA0049279.1 (hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa] >TYK17278.1 hypothetical protein E5676_scaffold434G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 1.15e-64
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA
Sbjct: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97
          DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV
Sbjct: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97

BLAST of IVF0005751 vs. NCBI nr
Match: KAE8650334.1 (hypothetical protein Csa_009641 [Cucumis sativus])

HSP 1 Score: 176 bits (445), Expect = 1.39e-51
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0

Query: 1  MSDAERKTANP-APTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSM 60
          MSDAERKTA   APTRLQSQAPASIEIKR L+WNV IPLLSPLVSPSSCGNS PEK+LSM
Sbjct: 1  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSM 60

Query: 61 ADNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97
          A+NNAREE KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Sbjct: 61 AENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV 98

BLAST of IVF0005751 vs. NCBI nr
Match: XP_023526926.1 (AT-hook motif nuclear-localized protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106 bits (264), Expect = 7.03e-25
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          M+ +ER+  N  PTRLQSQAPASI I R  +WNV IPLL+PLVS S CGNS  + VL  A
Sbjct: 1  MAGSERR--NTPPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSSQD-VLLTA 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEP 87
          +N AREE KGLT TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLTVTKWQHPACPFLANP 84

BLAST of IVF0005751 vs. NCBI nr
Match: XP_022924297.1 (AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata])

HSP 1 Score: 105 bits (261), Expect = 1.86e-24
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          M+ +ER+  N  PTRLQSQAPASI I R  +WNV IPLL+PLVS S CGNS  + VL M 
Sbjct: 1  MAGSERR--NTPPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSSQD-VLLMG 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEP 87
          +N AREE KGL  TKWQHPA PF   P
Sbjct: 61 ENKAREETKGLNVTKWQHPACPFLANP 84

BLAST of IVF0005751 vs. NCBI nr
Match: KAG6582368.1 (AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018779.1 AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102 bits (255), Expect = 1.34e-23
Identity = 57/97 (58.76%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 1  MSDAERKTANPAPTRLQSQAPASIEIKRVLDWNVVIPLLSPLVSPSSCGNSGPEKVLSMA 60
          M+ +ER+  N  PTRLQSQAPASI I R  +WNV IPLL+PLVS S CGNS  + VL M 
Sbjct: 1  MAGSERR--NTPPTRLQSQAPASIVINRASNWNVAIPLLTPLVSASPCGNSSQD-VLLMG 60

Query: 61 DNNAREENKGLTFTKWQHPAAPFYYEPVPRANAFVPV 97
          +N AREE      TKWQHPA P Y  P+P    FVPV
Sbjct: 61 ENKAREE------TKWQHPACPLYDGPLPMGTPFVPV 88

BLAST of IVF0005751 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-11
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 8  TANPAPTRLQSQAPASIEIKRV-LDWNVVIPLLSPLVSPSSCGNSGPEKVLSMADNN-AR 67
          + N   +RLQ +AP  ++I     +W V IPLLSP  SP       P  V+   +    +
Sbjct: 11 SGNRKSSRLQRRAPPPLKINPCEANWKVAIPLLSPTESPP----QKPPAVMKREEQRWGK 70

Query: 68 EENKGLTFTKWQHPAAPFYYEPVPRAN 93
          E  K   F KWQHPAAPFYY+P P +N
Sbjct: 71 EAEKPPVFKKWQHPAAPFYYQPAPSSN 93

BLAST of IVF0005751 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-08
Identity = 37/89 (41.57%), Postives = 44/89 (49.44%), Query Frame = 0

Query: 13  PTRLQSQAPASIEI---KRVLDWNVVIPLLSPL-VSPSSCGNSGPEKVLSMADNNAREEN 72
           P+RL  + PA   +       +WN  IPLLSPL +SP S     P   +    + A    
Sbjct: 21  PSRLLKRPPALKIVPATPAANNWNTAIPLLSPLALSPESSPVDQPP--VEKNQSTAVAVE 80

Query: 73  KGLTFTKWQHPAAPFYYEPVPRANAFVPV 98
           K   F KWQHPAAPFYYE       FVPV
Sbjct: 81  KTPVFKKWQHPAAPFYYESSTFVPPFVPV 107

BLAST of IVF0005751 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 35/88 (39.77%), Postives = 45/88 (51.14%), Query Frame = 0

Query: 14  TRLQSQAPA-SIEIKRVLDWNVVIPLLSPLVS--PSSCGNSGPEKVLSMADNNAREE-NK 73
           ++LQ +AP+  I+     +WNV IPLLSPL     SS   S      +  +    EE  K
Sbjct: 38  SQLQRRAPSLMIKPTSFSNWNVAIPLLSPLAPSLTSSFDQSHVPPPQNKTEIPVEEEVKK 97

Query: 74  GLTFTKWQHPAAPFYYEPVPRANAFVPV 98
              F KWQHPA+PF YEP      F+ V
Sbjct: 98  TPVFKKWQHPASPFCYEPTTFVPPFIQV 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NN025.8e-0639.77Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Match NameE-valueIdentityDescription
A0A5D3D1A66.3e-48100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L8D31.3e-4088.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G141830 PE=4 SV=1[more]
A0A6J1E8H92.8e-1963.22AT-hook motif nuclear-localized protein 20-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CRZ01.3e-1653.77uncharacterized protein At4g14450, chloroplastic-like OS=Momordica charantia OX=... [more]
A0A2P5A7134.9e-1652.69Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_362290 PE... [more]
Match NameE-valueIdentityDescription
KAA0049279.11.15e-64100.00hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa] >TYK172... [more]
KAE8650334.11.39e-5188.78hypothetical protein Csa_009641 [Cucumis sativus][more]
XP_023526926.17.03e-2564.37AT-hook motif nuclear-localized protein 20-like [Cucurbita pepo subsp. pepo][more]
XP_022924297.11.86e-2463.22AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata][more]
KAG6582368.11.34e-2358.76AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subs... [more]
Match NameE-valueIdentityDescription
AT1G04330.16.1e-1141.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G23170.14.9e-0841.57unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G14450.14.1e-0739.77unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR33912:SF2PUTATIVE-RELATEDcoord: 5..97
IPR040381Uncharacterized protein At4g14450-likePANTHERPTHR33912OS01G0939400 PROTEINcoord: 5..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005751.1IVF0005751.1mRNA