IVF0005580 (gene) Melon (IVF77) v1

Overview


Name	IVF0005580
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ubiquinol-cytochrome c reductase complex 6.7 kDa protein
Location	chr10: 13033391 .. 13033707 (+)
RNA-Seq Expression	IVF0005580
Synteny	IVF0005580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATCTCCTACATCCCATCAACATTGAAGCTGTTGCGTTATGGAGTGTTGCTGGGACAGCCACTGCTTTTGGCTTGTACAGGTATTCGTCTTTAGCTTCACCGACTCTTTTCTTTTCATCTACCAGCATGTTTCTGTTTGTTGTGAAAAATCGTAACTATTCTTATCGTCTTGAAACTGAAAAACATGGCAGCCATTTGACTGGTTGAAGAAGAAGGTTTGGAAGGTAGAGGAGAAAGAAGAAAACGAGGTGCAAACGAATGAATAA

mRNA sequence

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATCTCCTACATCCCATCAACATTGAAGCTGTTGCGTTATGGAGTGTTGCTGGGACAGCCACTGCTTTTGGCTTGTACAGGTATTCGTCTTTAGCTTCACCGACTCTTTTCTTTTCATCTACCAGCATGTTTCTGTTTGTTCCATTTGACTGGTTGAAGAAGAAGGTTTGGAAGGTAGAGGAGAAAGAAGAAAACGAGGTGCAAACGAATGAATAA

Coding sequence (CDS)

ATGAAGACAGGTGAAAAGGGTTTGTTGAAGTTCCTCCATCCAAAGCTCAGGAATCTCCTACATCCCATCAACATTGAAGCTGTTGCGTTATGGAGTGTTGCTGGGACAGCCACTGCTTTTGGCTTGTACAGGTATTCGTCTTTAGCTTCACCGACTCTTTTCTTTTCATCTACCAGCATGTTTCTGTTTGTTCCATTTGACTGGTTGAAGAAGAAGGTTTGGAAGGTAGAGGAGAAAGAAGAAAACGAGGTGCAAACGAATGAATAA

Protein sequence

MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSMFLFVPFDWLKKKVWKVEEKEENEVQTNE

Homology

[Close]

BLAST of IVF0005580 vs. ExPASy TrEMBL
Match: A0A5A7VG06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00230 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.4e-38
Identity = 88/105 (83.81%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
           MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM
Sbjct: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60

Query: 61  FLFV-----------------PFDWLKKKVWKVEEKEENEVQTNE 89
           FLFV                 PFDWLKKKVWKVEEKEENEVQTNE
Sbjct: 61  FLFVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of IVF0005580 vs. ExPASy TrEMBL
Match: A0A0A0KSL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 57/88 (64.77%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          MKTGEKGLLKFLHPKLRN+LHPINIEA ALWSVAG ATA                    +
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATA--------------------L 60

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 89
          +L  PFDWLKKKVW VEEK E+ VQTNE
Sbjct: 61 WLVQPFDWLKKKVWAVEEKGESGVQTNE 68

[Close]

BLAST of IVF0005580 vs. ExPASy TrEMBL
Match: A0A6J1JMA0 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111485942 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          M TGEKGLLKFL PKLRN LHPINIEA  LWSVAGTATA                    +
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATA--------------------L 75

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 89
          +L  PFDWLKKK+W VEEK E++VQ++E
Sbjct: 76 WLVQPFDWLKKKIWGVEEKTEDKVQSDE 83

[Close]

BLAST of IVF0005580 vs. NCBI nr
Match: KAA0067023.1 (hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259.1 hypothetical protein E5676_scaffold14G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 6.67e-52
Identity = 88/105 (83.81%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
           MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM
Sbjct: 1   MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60

Query: 61  FLFV-----------------PFDWLKKKVWKVEEKEENEVQTNE 88
           FLFV                 PFDWLKKKVWKVEEKEENEVQTNE
Sbjct: 61  FLFVVKNRNYSYRLETEKTWQPFDWLKKKVWKVEEKEENEVQTNE 105

[Close]

BLAST of IVF0005580 vs. NCBI nr
Match: KGN50751.1 (hypothetical protein Csa_005826 [Cucumis sativus])

HSP 1 Score: 106 bits (264), Expect = 5.68e-28
Identity = 57/88 (64.77%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          MKTGEKGLLKFLHPKLRN+LHPINIEA ALWSVAG ATA  L +                
Sbjct: 1  MKTGEKGLLKFLHPKLRNVLHPINIEAAALWSVAGIATALWLVQ---------------- 60

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 88
              PFDWLKKKVW VEEK E+ VQTNE
Sbjct: 61 ----PFDWLKKKVWAVEEKGESGVQTNE 68

[Close]

BLAST of IVF0005580 vs. NCBI nr
Match: KAG6600869.1 (hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 2.58e-24
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          M TGEKGLLKF  PKLRN LHPINIEA  LWSVAGTATA  L +                
Sbjct: 1  MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQ---------------- 60

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 88
              PFDWLKKK+W+VEEK E++VQ++E
Sbjct: 61 ----PFDWLKKKIWEVEEKAEDKVQSDE 68

[Close]

BLAST of IVF0005580 vs. NCBI nr
Match: XP_022988689.1 (ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 2.74e-24
Identity = 52/88 (59.09%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          M TGEKGLLKFL PKLRN LHPINIEA  LWSVAGTATA  L +                
Sbjct: 16 MMTGEKGLLKFLSPKLRNRLHPINIEAAVLWSVAGTATALWLVQ---------------- 75

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 88
              PFDWLKKK+W VEEK E++VQ++E
Sbjct: 76 ----PFDWLKKKIWGVEEKTEDKVQSDE 83

[Close]

BLAST of IVF0005580 vs. NCBI nr
Match: KAG7031504.1 (hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 3.89e-24
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MKTGEKGLLKFLHPKLRNLLHPINIEAVALWSVAGTATAFGLYRYSSLASPTLFFSSTSM 60
          M TGEKGLLKF  PKLRN LHPINIEA  LWSVAGTATA  L +                
Sbjct: 16 MMTGEKGLLKFFSPKLRNRLHPINIEAAVLWSVAGTATALWLVQ---------------- 75

Query: 61 FLFVPFDWLKKKVWKVEEKEENEVQTNE 88
              PFDWLKKK+W+VEEK E++VQ++E
Sbjct: 76 ----PFDWLKKKIWEVEEKAEDKVQSDE 83

The following BLAST results are available for this feature:

BLAST of IVF0005580 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG06	5.4e-38	83.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KSL8	1.1e-19	64.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223090 PE=4 SV=1	[more]
A0A6J1JMA0	5.3e-17	59.09	ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Cucurbita maxima OX=...	[more]

BLAST of IVF0005580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067023.1	6.67e-52	83.81	hypothetical protein E6C27_scaffold38G00590 [Cucumis melo var. makuwa] >TYK26259...	[more]
KGN50751.1	5.68e-28	64.77	hypothetical protein Csa_005826 [Cucumis sativus]	[more]
KAG6600869.1	2.58e-24	57.95	hypothetical protein SDJN03_06102, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022988689.1	2.74e-24	59.09	ubiquinol-cytochrome c reductase complex 6.7 kDa protein [Cucurbita maxima]	[more]
KAG7031504.1	3.89e-24	57.95	hypothetical protein SDJN02_05544, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0005580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005580.1	IVF0005580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane