IVF0005550 (gene) Melon (IVF77) v1

Overview
NameIVF0005550
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionATP-binding/protein serine/threonine kinase
Locationchr11: 3079598 .. 3079950 (-)
RNA-Seq ExpressionIVF0005550
SyntenyIVF0005550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGCCCTCGACAAAGTTCGTTCTCATCTTCCTAATGTTCTTCGTTATCTCAGGTATATCAATTAATTTTAATTGCTTATATAGGGCCATTTTTTTTTTTTTTTTGCATCAGTTATCTTATTGTATGACAATTTAACAATTACATTAATTGCTTCAGAAACATTGTTCGTGTCAGATGCTAGAAATGTTGTAAACATTCCATGCAAAAGCCGTATTGATTGTTCTGATCCATGGGATTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCCTACAGCCTTTTCTGAACATTTGAGAGAAGATAATACAATGCTCCTTTAA

mRNA sequence

ATGGTGAAGCCCTCGACAAAGTTCGTTCTCATCTTCCTAATGTTCTTCGTTATCTCAGAAACATTGTTCGTGTCAGATGCTAGAAATGTTGTAAACATTCCATGCAAAAGCCGTATTGATTGTTCTGATCCATGGGATTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCCTACAGCCTTTTCTGAACATTTGAGAGAAGATAATACAATGCTCCTTTAA

Coding sequence (CDS)

ATGGTGAAGCCCTCGACAAAGTTCGTTCTCATCTTCCTAATGTTCTTCGTTATCTCAGAAACATTGTTCGTGTCAGATGCTAGAAATGTTGTAAACATTCCATGCAAAAGCCGTATTGATTGTTCTGATCCATGGGATTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCCTACAGCCTTTTCTGAACATTTGAGAGAAGATAATACAATGCTCCTTTAA

Protein sequence

MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHGLEKKFLPTAFSEHLREDNTMLL
Homology
BLAST of IVF0005550 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 1  MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVKP TKF L FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLPTAFSEHLRED 78
          LEKKFL  AF E LRED
Sbjct: 61 LEKKFLHKAFPESLRED 77

BLAST of IVF0005550 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVK STK  L+ LMFF+ISET FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLPTAFSEHLREDNTMLL 83
          LEKKFL  AF EHLRE+ T  L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

BLAST of IVF0005550 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 33/77 (42.86%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 1  MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHG 60
          M K S K  LI ++  + S   F  DARNVV IPC++  DC D   CDC  N C C   G
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRC--PG 60

Query: 61 LEKKFLPTAFSEHLRED 78
           E+ F   A + HL+ D
Sbjct: 61 EEQDFFTKAITNHLKHD 75

BLAST of IVF0005550 vs. ExPASy TrEMBL
Match: A0A1R3GI95 (ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=COLO4_35133 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHGLEKKFLPTAFSEHLREDNTML 82
          +ARN +NIPC +  DC DP  C+C++NLCFCHP  +         + H+ +DN  L
Sbjct: 27 EARN-INIPCNTIKDCPDPVKCECRINLCFCHPAAM------FVAANHVAKDNPKL 75

BLAST of IVF0005550 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 4.44e-42
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0

Query: 1  MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVKP TKF L FLM F+ISE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLPTAFSEHLRED 77
          LEKKFL  AF E LRED
Sbjct: 61 LEKKFLHKAFPESLRED 77

BLAST of IVF0005550 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 8.87e-40
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MVKPSTKFVLIFLMFFVISETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVK STK  L+ LMFF+ISE +FV++ARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKSSTKLALLLLMFFIISE-MFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLPTAFSEHLREDNTMLL 82
          LEKKFL  AF EHLRE+ T  L
Sbjct: 61 LEKKFLHNAFPEHLREEKTTSL 81

BLAST of IVF0005550 vs. NCBI nr
Match: OMO57769.1 (ATP-binding/protein serine/threonine kinase [Corchorus olitorius])

HSP 1 Score: 53.9 bits (128), Expect = 2.65e-07
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPHGLEKKFLPTAFSEHLREDNTML 81
          +ARN+ NIPC +  DC DP  C+C++NLCFCHP  +         + H+ +DN  L
Sbjct: 27 EARNI-NIPCNTIKDCPDPVKCECRINLCFCHPAAM------FVAANHVAKDNPKL 75

BLAST of IVF0005550 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 50.8 bits (120), Expect = 4.11e-06
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP 58
          +ARN+ N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRMNLCFCHP 57

BLAST of IVF0005550 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 50.8 bits (120), Expect = 4.11e-06
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 26 DARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP 58
          +ARN+ N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 26 EARNI-NTPCNTVKDCADPIKCECRINLCFCHP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMG32.7e-3185.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
A0A0A0LJR01.3e-3080.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A2N9FRQ08.7e-0642.86Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A1R3GI951.6e-0442.86ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=C... [more]
Match NameE-valueIdentityDescription
KGN61957.14.44e-4285.71hypothetical protein Csa_006779 [Cucumis sativus][more]
KAE8651915.18.87e-4078.05hypothetical protein Csa_006059 [Cucumis sativus][more]
OMO57769.12.65e-0742.86ATP-binding/protein serine/threonine kinase [Corchorus olitorius][more]
EOY32073.14.11e-0657.58Uncharacterized protein TCM_039538 [Theobroma cacao][more]
EOY32074.14.11e-0657.58Uncharacterized protein TCM_039540 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005550.1IVF0005550.1mRNA