IVF0005538 (gene) Melon (IVF77) v1

Overview
NameIVF0005538
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 17488494 .. 17488784 (+)
RNA-Seq ExpressionIVF0005538
SyntenyIVF0005538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTGTCGGCACTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGAGGTCAATGGTTGTGTGGTCGTTGGCTGTAAGGTCGTCAGCTATAAGGTCGTTGACTGTGAGGTCGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATCGATGAATTATACCACCCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTTTCGTCGTCTGA

mRNA sequence

ATGAGGGTTGTCGGCACTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGAGGTCAATGGTTGTGTGGTCGTTGGCTGTAAGGTCGTCAGCTATAAGGTCGTTGACTGTGAGGTCGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATCGATGAATTATACCACCCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTTTCGTCGTCTGA

Coding sequence (CDS)

ATGAGGGTTGTCGGCACTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGAGGTCAATGGTTGTGTGGTCGTTGGCTGTAAGGTCGTCAGCTATAAGGTCGTTGACTGTGAGGTCGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATCGATGAATTATACCACCCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTTTCGTCGTCTGA

Protein sequence

MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKIDEIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV
Homology
[Close]
BLAST of IVF0005538 vs. ExPASy TrEMBL
Match: A0A5A7T4R1 (Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00610 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 60
           MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID
Sbjct: 6   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 65

Query: 61  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 97
           EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV
Sbjct: 66  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 101

[Close]
BLAST of IVF0005538 vs. ExPASy TrEMBL
Match: A0A5D3DGD7 (Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001110 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.8e-34
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 60
          MRVVGTVRSS VKSSAVRSSVVRSSVVRS+VVWS AVRSSAIRS TVRSS VTIGTKKID
Sbjct: 2  MRVVGTVRSSVVKSSAVRSSVVRSSVVRSLVVWSSAVRSSAIRSSTVRSSTVTIGTKKID 61

Query: 61 EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 97
          EIDELY PTK+EIRTDKIDDAS DGVGEQMRSF VV
Sbjct: 62 EIDELYRPTKMEIRTDKIDDASCDGVGEQMRSFVVV 97

[Close]
BLAST of IVF0005538 vs. NCBI nr
Match: KAA0036557.1 (putative dynein heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 7.02e-53
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 60
           MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID
Sbjct: 6   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 65

Query: 61  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 96
           EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV
Sbjct: 66  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 101

[Close]
BLAST of IVF0005538 vs. NCBI nr
Match: TYK22666.1 (putative dynein heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 1.30e-45
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 60
          MRVVGTVRSS VKSSAVRSSVVRSSVVRS+VVWS AVRSSAIRS TVRSS VTIGTKKID
Sbjct: 2  MRVVGTVRSSVVKSSAVRSSVVRSSVVRSLVVWSSAVRSSAIRSSTVRSSTVTIGTKKID 61

Query: 61 EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 96
          EIDELY PTK+EIRTDKIDDAS DGVGEQMRSF VV
Sbjct: 62 EIDELYRPTKMEIRTDKIDDASCDGVGEQMRSFVVV 97

The following BLAST results are available for this feature:
BLAST of IVF0005538 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0005538 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T4R12.4e-39100.00Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3DGD78.8e-3490.63Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of IVF0005538 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036557.17.02e-53100.00putative dynein heavy chain [Cucumis melo var. makuwa][more]
TYK22666.11.30e-4590.63putative dynein heavy chain [Cucumis melo var. makuwa][more]
BLAST of IVF0005538 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005538.1IVF0005538.1mRNA