IVF0005520 (gene) Melon (IVF77) v1

Overview


Name	IVF0005520
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Nicotinamide adenine dinucleotide transporter 1
Location	chr12: 4921541 .. 4923658 (+)
RNA-Seq Expression	IVF0005520
Synteny	IVF0005520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACCTCTCCAGTTCTCAATCTAAAATTTCTTATGATCCACCTAGCGACCCATCTACTAGAAGCCTCATCCGTCGGAAAGGAAATCCTTTACGCAGAAACTTCATCATTTTGTTCAGAAAAATTGATTTTCATGCTATGTTCTCTTTCTTTTTTTTTTGTTTCTATGTTTTTCTTTGGTTCTTTTTGGCGTCTCTTGATGTGCACGTTTGATTTTGAAGAACTTTCTTGCTGTTTCTCCTTGTCGATGTGTTTTAAATCGTGAATGATTGCACTTGTATGATTTTTTATAAGCATTTCAATTTTCAGTTTATTGCTGGAATAAATGTTGAGAAAATGAGTTTTGCACCTTTAAATTTGATGTCGTTTATGTGGGAAGTAGCTGCTCTTTTTTGTTATAGATAGAGGAAACAAGGCAATTTGAGAGATTGAACTTAACTACGATGACTGCAATACCCAACTTGGGTAGAATAAAAAGTGTATCATCCCTGCCATTTTCATTTATCACTCTTAGTAAATAAAACCATTCATTTATGCTATTTATTCTTATTGGTGACATGAAATGTTTAATTTCTCTTTGCAAGGGCAGTATTGTTGGTTGCTACAAATATTTCCGGTTACCTTCTTGCTTTGCTCCAAAGTAGGTTGAAAAGCTATGCTTCTTCACAGAAGGTAGCTCTTTCCCAAAATGTTCTTTTTCCAAACAATTGATAATGTTGTCTCAAATATACCTACGTTGTTATGAACATCTCGTTTCTACCCAGGAGATGTGTGTAGGCTTTGATTGGACTCTAGTTCCCATTATATTACCATTGTTGTCTTTTCATCTGCCTTTGCCATCTCTTGTATCTTAGGAAAATTGTGCATTTATATTTTTTGTTTTAAAGAAAAGCCATCTGTGATGAAAATGAACTATCACATTGTGTTAACAAAATGAAGATTTTATTTGAGGATCTTCAGTTGGCTGAAAAAGAAATGGACCCTTAAAGCCTTATGTCATATTAAAAATTAGTCTTCTTTTCTTTTTTATGTGGTAGGATCAAGATGTAAGAAGTCAGAAAATGATCAAATCACCACGCCAGTTGAGGTATTTGGTACATGCTTGTGATTGTGTTTTATGTGTAAAATCCCTTATGCTTTTGTATATTTTTTATTTCATTTTAAAATGACCAAATGAGACCAATTTCTACTTTAACTGAAGTCAATATTTTTCTACAAACTTAAGGTGCTTGGAACAAATGACTTTGGTTACCATTGCAGAAGTTTGTGATGCTAATCCACAACTCATTGTAATTGGTGAACTTCGGGCCCTTGTACCAAAGTTATGCTGATATGCCATTTTCTTGTCATGGGTTGTACAAGTTGCAATAGGATTTGATTATATATATAAACATCCATTCAAGCAGTTATAGTTGGTTGAAGGGTTTGTATTACAATTGAAGTGCTTTGATTATATATGGTGTTTTTTGTTCTGTTGACTTTTGTTTTGTTTTATCTATTCAAGCAACAAATTTTTCGTAAGGAGGGGCTATGTGGAATGTATAGAGGTCGTGCAGCTATAGTGCTTGCATTACTGCCTAACTGGGCTGTAAGTCCCTTGTGATATTTTTAAACCAGAATATTTTTTTAGTTCCTATTCCGGTTTGTCTTTGTGTACTTGAATCTCATAAGTTTAGATGTGAAGCAATATTAGCTACCCTAATGTTATTTACTAGGTTTGTGTAACTTCCTTACGATATTCTAAACCTTGAAACAAGGTTTAGCTCAGTGCTTGATTTGTGTATAACTTGGTTTGTTTTCACTTGTTAAAGAATAGTAGCAGTTATTTTTCTTTTGCATGACATAATATTTGCTTGTGGCAGGTTTATTTCACAATATATGGGCAGCTTAAAACCTTTCTTGGCTCTGATGGTTAGTTTGATTTTTCTTTTCTTTTCTTTTTTTATTTTTTCCCCAATTTACGACTTTATCCATTTTTTCATTGATACTCTCATGGCAATAGGTGCTAATATGATGGTTGCTTTTGGTGCTAAGGCTGCTACAACTATTGCAACAAATCCTTTATGGGTTGTCAAGACCAAGCTTCATGTATGGATTTCAAGCTTATTTTCTTGA

mRNA sequence

ATGACCCACCTCTCCAGTTCTCAATCTAAAATTTCTTATGATCCACCTAGCGACCCATCTACTAGAAGCCTCATCCGTCGGAAAGGAAATCCTTTACGCAGAAACTTCATCATTTTGTTCAGAAAAATTGATTTTCATGCTATGTTCTCTTTCTTTTTTTTTTGTTTCTATGTTTATTTCACAATATATGGGCAGCTTAAAACCTTTCTTGGCTCTGATGGTGCTAATATGATGGTTGCTTTTGGTGCTAAGGCTGCTACAACTATTGCAACAAATCCTTTATGGGTTGTCAAGACCAAGCTTCATGTATGGATTTCAAGCTTATTTTCTTGA

Coding sequence (CDS)

ATGACCCACCTCTCCAGTTCTCAATCTAAAATTTCTTATGATCCACCTAGCGACCCATCTACTAGAAGCCTCATCCGTCGGAAAGGAAATCCTTTACGCAGAAACTTCATCATTTTGTTCAGAAAAATTGATTTTCATGCTATGTTCTCTTTCTTTTTTTTTTGTTTCTATGTTTATTTCACAATATATGGGCAGCTTAAAACCTTTCTTGGCTCTGATGGTGCTAATATGATGGTTGCTTTTGGTGCTAAGGCTGCTACAACTATTGCAACAAATCCTTTATGGGTTGTCAAGACCAAGCTTCATGTATGGATTTCAAGCTTATTTTCTTGA

Protein sequence

MTHLSSSQSKISYDPPSDPSTRSLIRRKGNPLRRNFIILFRKIDFHAMFSFFFFCFYVYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS

Homology

[Close]

BLAST of IVF0005520 vs. ExPASy Swiss-Prot
Match: O22261 (Nicotinamide adenine dinucleotide transporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NDT1 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-08
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           +YFT+Y QLK+FL S+      GAN++ A GA AATTIATNPLWVVKT+L
Sbjct: 92  IYFTMYDQLKSFLCSNDHKLSVGANVLAASGAGAATTIATNPLWVVKTRL 141

[Close]

BLAST of IVF0005520 vs. ExPASy Swiss-Prot
Match: Q8RWA5 (Nicotinamide adenine dinucleotide transporter 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NDT2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-07
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           VYF++YG+LK  L S       G+NM+ A GA AAT+IATNPLWVVKT+L
Sbjct: 96  VYFSVYGKLKDVLQSSDGKLSIGSNMIAAAGAGAATSIATNPLWVVKTRL 145

[Close]

BLAST of IVF0005520 vs. ExPASy TrEMBL
Match: A0A5A7UED6 (Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003640 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.8e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 111
           VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS
Sbjct: 18  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 70

[Close]

BLAST of IVF0005520 vs. ExPASy TrEMBL
Match: A0A5D3CPK5 (Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00580 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.3e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 111
           VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKT+LHVWISSLFS
Sbjct: 18  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTRLHVWISSLFS 70

[Close]

BLAST of IVF0005520 vs. ExPASy TrEMBL
Match: A0A5A7TSY1 (Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001360 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.8e-10
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           VYFTIYGQLKTFLGSD        GANMM A GA AATTIATNPLWVVKT+L
Sbjct: 88  VYFTIYGQLKTFLGSDDEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRL 139

[Close]

BLAST of IVF0005520 vs. ExPASy TrEMBL
Match: A0A1S3BR31 (LOW QUALITY PROTEIN: nicotinamide adenine dinucleotide transporter 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492787 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.8e-10
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           VYFTIYGQLKTFLGSD        GANMM A GA AATTIATNPLWVVKT+L
Sbjct: 88  VYFTIYGQLKTFLGSDDEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRL 139

[Close]

BLAST of IVF0005520 vs. ExPASy TrEMBL
Match: A0A0A0K5L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405860 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 39/52 (75.00%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           VYFTIYGQLKTFL SD        GANMM A GA AATTIATNPLWVVKT+L
Sbjct: 88  VYFTIYGQLKTFLASDHEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRL 139

[Close]

BLAST of IVF0005520 vs. NCBI nr
Match: KAA0051911.1 (nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.44e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 110
           VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS
Sbjct: 18  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 70

[Close]

BLAST of IVF0005520 vs. NCBI nr
Match: TYK12249.1 (nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 6.98e-28
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTKLHVWISSLFS 110
           VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKT+LHVWISSLFS
Sbjct: 18  VYFTIYGQLKTFLGSDGANMMVAFGAKAATTIATNPLWVVKTRLHVWISSLFS 70

[Close]

BLAST of IVF0005520 vs. NCBI nr
Match: KAA0046663.1 (nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa] >TYK18198.1 nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.71e-13
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKLH 102
           VYFTIYGQLKTFLGSD        GANMM A GA AATTIATNPLWVVKT+L 
Sbjct: 88  VYFTIYGQLKTFLGSDDEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRLQ 140

[Close]

BLAST of IVF0005520 vs. NCBI nr
Match: XP_008451527.1 (PREDICTED: LOW QUALITY PROTEIN: nicotinamide adenine dinucleotide transporter 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 3.71e-13
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKLH 102
           VYFTIYGQLKTFLGSD        GANMM A GA AATTIATNPLWVVKT+L 
Sbjct: 88  VYFTIYGQLKTFLGSDDEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRLQ 140

[Close]

BLAST of IVF0005520 vs. NCBI nr
Match: XP_038896110.1 (nicotinamide adenine dinucleotide transporter 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 3.71e-13
Identity = 40/53 (75.47%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD--------GANMMVAFGAKAATTIATNPLWVVKTKLH 102
           VYFTIYGQLKTFLGSD        GANMM A GA AATTIATNPLWVVKT+L 
Sbjct: 88  VYFTIYGQLKTFLGSDDENHQLSIGANMMAASGAGAATTIATNPLWVVKTRLQ 140

[Close]

BLAST of IVF0005520 vs. TAIR 10
Match: AT2G47490.1 (NAD+ transporter 1 )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           +YFT+Y QLK+FL S+      GAN++ A GA AATTIATNPLWVVKT+L
Sbjct: 92  IYFTMYDQLKSFLCSNDHKLSVGANVLAASGAGAATTIATNPLWVVKTRL 141

[Close]

BLAST of IVF0005520 vs. TAIR 10
Match: AT1G25380.1 (NAD+ transporter 2 )

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 58  VYFTIYGQLKTFLGSD------GANMMVAFGAKAATTIATNPLWVVKTKL 102
           VYF++YG+LK  L S       G+NM+ A GA AAT+IATNPLWVVKT+L
Sbjct: 96  VYFSVYGKLKDVLQSSDGKLSIGSNMIAAAGAGAATSIATNPLWVVKTRL 145

The following BLAST results are available for this feature:

BLAST of IVF0005520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22261	1.8e-08	64.00	Nicotinamide adenine dinucleotide transporter 1, chloroplastic OS=Arabidopsis th...	[more]
Q8RWA5	3.5e-07	60.00	Nicotinamide adenine dinucleotide transporter 2, mitochondrial OS=Arabidopsis th...	[more]

BLAST of IVF0005520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UED6	2.8e-20	100.00	Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CPK5	6.3e-20	98.11	Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7TSY1	7.8e-10	76.92	Nicotinamide adenine dinucleotide transporter 1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BR31	7.8e-10	76.92	LOW QUALITY PROTEIN: nicotinamide adenine dinucleotide transporter 1, chloroplas...	[more]
A0A0A0K5L8	3.9e-09	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405860 PE=3 SV=1	[more]

BLAST of IVF0005520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051911.1	2.44e-28	100.00	nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa]	[more]
TYK12249.1	6.98e-28	98.11	nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa]	[more]
KAA0046663.1	3.71e-13	75.47	nicotinamide adenine dinucleotide transporter 1 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008451527.1	3.71e-13	75.47	PREDICTED: LOW QUALITY PROTEIN: nicotinamide adenine dinucleotide transporter 1,...	[more]
XP_038896110.1	3.71e-13	75.47	nicotinamide adenine dinucleotide transporter 1, chloroplastic [Benincasa hispid...	[more]

BLAST of IVF0005520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47490.1	1.3e-09	64.00	NAD+ transporter 1	[more]
AT1G25380.1	2.5e-08	60.00	NAD+ transporter 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain superfamily	GENE3D	1.50.40.10	Mitochondrial carrier domain	coord: 22..107 e-value: 2.8E-7 score: 31.6
IPR023395	Mitochondrial carrier domain superfamily	SUPERFAMILY	103506	Mitochondrial carrier	coord: 49..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005520.1	IVF0005520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035352	NAD transmembrane transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0051724	NAD transmembrane transporter activity