IVF0005510 (gene) Melon (IVF77) v1

Overview
NameIVF0005510
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Locationchr01: 2477102 .. 2484805 (+)
RNA-Seq ExpressionIVF0005510
SyntenyIVF0005510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCCTTATCAAGCAATTCCTGTAACTGTACCTTCAGTTCTTTCAGTTCTGCGGGGGCCATTCTGTAAGGGGCTCTGGATATAGGAACCGTGCCCGGCTCCAACTCTATGGCAAACTCAACCTCCCTGTGCGGAGGTAACCCTGGAAGTTCCTCAGGAAAAACGTCCGGATAGTCCCTCACTACTGGTTCTGACGACAGGGATACATCCGCCTCTCTAGTATCCACTACACTCGCTAAGATACCCCAAGTACCCTGACTGAGCAGTTTACTGGCCCTGATGGCTGAGATTACCTGAGGCAACGACTTTGACCCTCCTCCCTTAAATTTAAAACTGGCCATCGAGGGAGGGTTAAACGTTACCTCCTTACGTGAACAATCTATGCTGGCGTGGTTAGCGGCCAACCAATCCATACCCAGGATTACATCAAAGTCCAGCATATCCAGAACTATCAGCGTTACCTCAATCACATGGCCTGCTAACTCAATCTGACATGCCTTCACCTTTTCCTTCGACAACATACATTCCCCGGAAGGAGTAGATACTGACAGAACATGGTGTAAGGGCTCAACCTCTAAGCGGGCATGCGACACAAATGCGGAAGAGATAAAAGAATGTGACGAACCCGAATCAAACAAAACTAAGGCGTAATGCCCCAACACTGGGAGCGTACCTGTCACTACTGTGCCTGCCTTCTCAGCCTCAGTCCTGTTGGTAGCAAAGACTCTACCCTGTTGTGGAGCACCAGCCCCCTGATTCTGCGCAATCCCCGTGACTCTCAACGGGCATCTATCAGCTGTATGACCCTCTTGCCTGCACTTAAAGCAGGTCCTGGTCCCGAATAAGCAACGGCCCAGATGGTGCTTCCCACAAGTGGTACACAACGGCTTCCCTCTGGCAGGCTCCCCTGCCTCAAAAGGTTTCTGCTGGAAGCTGCGAAACTCACCACCTGGTCTGAAATTCCGCTGTGGCACTGGAACAGGCTGCTGCTCAGCCTTCCTCTTCTGTCCCGACGTCGAACCTCTACCAGCGGTCTTAGACGAGTTGGCCCTCTCCTGTAAACTGAGATCCACTGCCAGGCGCAGTGCATCGGCATGAGTAGCGGGTCTGAAAGCTCGGACCAAACCCTGAATGTCCAGTCTGAGGCCTCTAACAAACTTGTCAGCTCTGGCTGCCTCAGTCGCTATCATCTCGGGAGCGAAGCGGGATAACATGTCAAATTCCGCATCATACTGCTCCACTGTCATGTCACCCTGCTCTAGGTTCAGAAACTCCTGCCGCTTGGCATCTCTCAAACTGGCAGAGAAGAATTTCGCATAGAAACTCTCCTTGAACTGCTGCCACGTGATCTGACTCACATCACCACCTAGCATCCTCTCTGTAGTCTCCCACCATGCAGTACCTCTGTCAGTCAACATAAAAACAGCACACTGAACCTTCTGATCCTCAGGGCATTTCATGTAACGGAATATGGTCTCCAAGGACGATACCACATCTGAGCTCTGGTGGGGTCCTCCAAAGACCCATCAAACGTCGTGGGATTATACTTCCTGAAATCCCTCAGGTGCTTAGCCTCTGCCGACAACTGATCCGGCACAAACTGGGGTGCAACTGGTACCGGAGCCGGAGCTGGAGCAGGAATTGGTGCTGGAGCTGGCGCTGGAGCTGGCGCCGGCGTTGGCGAGGCAGGCTTCTGCTGCTCCCGCATCTGCATAATCATATCTCTAAACCTCTGCTCCATGGCGGCTAGGTCCGCATGAGTAACTGGCGCAGCCGGGTCAGGGGCTTGGGCTACAGGCTGCACCTCAGGCTGAACGCGTCCTGCTCCCCTTCCTCGGCCTCCTCGGCCACCCCTTCGTGCACCTCTCCTTGGTGGCATTTCCTAACAACCACCAACGATTCCTTTAGTCACAAATGGTAATTGAATTTGCAGTTTAACTTAGGTAAGGTAATGCATGTAGAGTTATACATATACTTTCATGAGAGCGTACCTGACGAGCGGCAAGGATCGTTTCAGCCATAAGGACACAAAACACAGACTCACATTATAAGTCAGTCTACAGAACCTAAAACTTAGGCTCTGATACCAACTGTAACGACCCAACTTTTCCGGACTAAGCTGAGGTCACTACCAAATACCAAAACTCGACCATTCAAATTAAAATTTAAAACAGGCTAGATACGATTCATTAAAACATTATAAACCTTACAAAAGACAGTTCCGGGCCCTATTTTAATAATTCAAAAAGTCACAAAATAAAATGTCAAGTCACCAGTCCAAAATCACAGTCAAAATGTTCTGACAAAATACATAGCGGAAGCGAAAGAAAAACAGACGCGTCCATATGGCCTTCACGCATCCTTCCTGCCTCTCGTCGGTCTGCCCTCGCTGTACCCCTACCTGAAAAGTTAAAGAAAGGAAAGGGTGAGTATAAACATACCCAGTAAGGGACCCACTACTGGGCCCGTTAGGGAACAACAGTTAACTTCCTATTCGGGGGTACCCTACATAACAGTCTAGTGGTTCCGTAGAACGCACATATCAGTCTAGTGCTCCCGAAGGATGCACATATCAGTCTAGTGCTCCCGAAGGATGCACATATCAGTCTAGTGCCCCCGAAGGATGCACATATCAGTCTAGTGCTCCCGAAGGATGCACATATCAGTCTAGTACTCCCGAAGGATGTACATATCAGTCTAGTGCTCCCGAAGGATGCACTCTCAGTAAGGCACACTACCCCATAGATGAAGCTAACCGTTACCCCTCAGCCTTCACTAAACTGTCTACATCAGTCACATCTCAACGACATTCATATTACAGTCCCGCCATAGGCTTTGTCAGTCAGATAGTATAGGTTTACATCTACACCCTCAGTTGCTTTATGCATTACCGGTTCGCACACCAATAGGGAAACCCTAGGTCCAATCGACTAACCAACCAAAACCGGACTTACTGTCCTTTCCCGTACAAACTCCATGAACCACACCCAGACCAGTGTTAACACATACTAACCGTAACTCTAAGGTCCATCAACATATAATTTCAATCCACAAATAGCAGTCACAGTATATTTCATCGACAAAATATAATGTCAGTACTTATCAGTCAACACGCATTCAGATATTCAGTACAGTCACTAACGTGTAATCCCCTGTGGATTACTACGGTTTATCTGGACTCGGGGTCCAGTAGTAGGAAAACCTTACCTGAAACTCGGTTATGCCCCTAGATCGAAAACACGCTCAACAGATCCACCTAAACGAAACACGAAAGTTTTAGTAGCTGACTTTAGTAGAAGTCGTTTTAAAAAGGTCAGAAGCGATCCGTTGACTTACCCAAGGAAAGGAATCTATCTCTAACCAGGCCTGCCGCGGAACCCGAGAACTTAAGCGTCAACTCTGCACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTAATTCAACATTCAAACTCAAATCGGACGAGGTAACACTAGGGAATTCATCAGAACAATCCTTACCGAAACTCACCGTGAACCGAAATGAAGGAAGGAAGGCTTAGGCGGCTCGGCTCGGCTCGGCTCGGCTCGGCTTGGTTCGGCTCAGCGGCTCGCGGCTCGGCTTGGTTCGGCTCGCGGCTCGGCTCGCGGCTCGGCTCACTCGACTCGCGGCCGGCTCACTCGGCTCGCGGCTCGGCTCGCGGCTCACTCGGCTCGGCTCGCGGCTCACCCGGCTCGGCTCGCGGCTCACTCGGCTCGGCTCGCGGCTCACCCGGCTCGGCTCGCGCTTACTCGGCTCGGCTTACTCAGCTCAGCTCACCCGGGTTGTGTGGCTCGGACGGAAACGGGTTTCGGGTCGGGTCGGCTTGGCTCGGGTCGGTCTTGCAGCGCGAAACGGGCAATCGCGAGCGGTGGTTCTCCGACGTCCGACGATCGTGACGAACGACAGCGTGGCGGTTTGCGGACGACACCGAGCTGATGGCGGAGATGATGCGGCGGTAGAAGAACGAAGGGAGAAAGCTGGAGAAAGAAAAGGAATGGATGGTTCGGGTGGCGGTGGCGCGGCGGAGGAAAACGAACACGGAGGGAGAAGGGAGGAGATGGTGGCGGAGATGAAGAGAAAAACGAGATGAAGAGACAGACGGAGATGGAAGAGACAGACGGAAATGGAAGAGCAGACGAAGGTGGAGGCGGAGGAGAAGAGGAAATCGGAGGCGGCGCGCGGGTGAAGAAGAAGGAGAAGACGAAAACGGGCTGCGCGGGCGTCTTTAGGGTTTTAGGTTTTTTAAAAAAAATTTTATATATATTATATATATATATATATCTTAAATAATATATAACATTAATAATTTAATTTAAATAATAATATATATATAAAAATATAAATAATAATAAATATTATTATATATATATAATAATCTTTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATACTAATATATAAAATTTTATTATACACATATATATATGTATTAACTTTTAAAAATTAATTAATAATATAATACTAAAATAATAATAATAAAAGAAATATTAATATTAACTTATATAAAGATAATAATAAATTAACATAATAATAATAGTATAATTACTATCATATTTTTATTACATAGACTACAAGTATTAAGTTAGAATTTTCAGAGATTAATCCAAAATTTAACATTTCTCGAAAAATTATTTAAAACGAAATTTTTTTTTACCTCGAAAATTTTGGGCGTTACCTTCTTCCCTCCTTAGGGAACTTTCGTCTCGAAAGTTTTATTCTTCGAACAGTTCGGATAACGGGATCTCATGTCGTCTTCACGCTCCCATGTAGCCTCTTCTACCCCGTGATTCCGCCATAAGACTTTAACTAGGGGAATTTGTTTGTTTCTCAACGTCTTCACCTCTCTAGCAAGCACCTCACAGGTTTCAACATAGCTCAAGTTTTCATCAATCTCTAGTGGCTCGTAATCCACTACATGGGATGGATCTGGCACGTACTTCCTCAACATAGAAACGTGAAACCATCATGAACTGTCGAGAGTGATGGAGGCAACGCCAAGCGATAAGCTACAGGGCCAATCCGCTCCAGAATCTCAATGGCCCAACAAAACGGGGACTCAACTTTCCCCTCCTTTCAAAACGCAAGACACCTTTCATAGGTGCTACCTTTAAGAACACCTTATCCCCTATCTCGAACTCAAGGTCCTTCCGCCTCACATCTGCATAACTCTTCTGTCTACTCTGAGCGGTATGCATGCGTGATCTAATCTTCTGTATAGCTTCGTTAGTAGACTGGACTAACTCAGGACCCATCAATCTCTGCTCACCACCTCACCCCAGCAAACCGGGGATCTACCACACATGCCGTACGGGCCTCAAACGGTGCCATGCCAATAGTAGCCTGATAACTGTTATTATAAGCAAATTCCATCAAATGTAAGTGGGAGTCCCAGCTACCTGGAAATTCCAATGCACACGCCCGCAACATATCCTCTAAAACCTGGTTCAGACGCTCAGTCTGACCGTCAGTCTGTGGATGGAAAGCCGTACTAAAGTCCAACCTCGTGCCCATAGCAGTCTGCAAACCCTTCCAAAATTGGAAGTGAAACGGGCATCTCTATCAGAAACAATCGACACTGGCACTCCATGTAATCTCACTATCTCAGACATGTACAACTGTGCCCACTTACTAGCAGTATAGGTGGATTTACCCGGAACAAAGTGCGCTGACTTAGTAAGTCTGTCCACCACAACCAAATCACTGTAAAACCCCTCAGAGTTCTCGGTAGCCCTGTAATGAAATCCATGGACACGTTCTCCCACTTCCATTCCGGTATGCTCAAGGGTTGTAATAAACCAGCTGGTTTCTGCCTTGGTGCCTTAACCTGCTGGCACACCAAGCATTTACTAACAAATTCTGCTACTTCCCTCTTCATGTTACGCCACCAATAAACCCGCTTCAGGTCCTGATACATCTTCGTACTACCTGGGTGCATGGAAAATGGGGAACTGTGCGCCTCAGATAATAATTCTGTCTTAACGCACTATCTGACGGAACACAGAGGCGTCTTTCAAATAACAGTCCACCATCAGAGGATAACGAGAACTCAGCCGTTTGCCCTGCCTCTGCTAGGCCACGCTTCTCAACCAGATAAGGATCGTTACTCTGAGCATCAATGATCCTCTGCCTCAAAGTCGGCTGTACCGTCAACTGGGCTAACTGCATAGTAACTGTCCCCACTGACACTGCAATCTCAGCCCGCTCGAGATCCCGAAGCAATGGGGCCTGCCGGGTAATGAGTGCTGCTGAATGTGACACTTTCCTACTAAGAGCATCGGCTACCACATTTGCCTTGCCTGGATGATACAGTATCTCACAATCGTAATCCTTCACTAACTCAAGCCACCTTCGCTGTCTCATATTCAATTCTTTCTGAGTAAAGAAGTATTTCAAGCTCTTATGATCTGTGAATATCTGTATCTTTTCACCATATAAATAATGCCTCCATATCTTCAAAGCAAAAACCACTGCTGCCAACTCTAGATCATGTGTAGGGTAGTTCTGCTCATGACTCTTCAACTGACGAGACGCATAAGCGACCACCTTACCCTGCTGCATCAAAACACAACCCAAACCTTCTTGGAAGCATCACTATAAATCACGAAACTGCCAGAACCATCGGGTACCGTGAGAACCGGTGCGGTAACTAGCTTCTGTTTAAGGGTCTGAAAACTGTCCTCACATGCCTTGCTCCAAACAAAAGGAACTCCCTTTCTGGTCAACTGAGTAAGAGGAGTAGCTATACGAGAAAAGTTCTCCACAAACCGTCGATAATAGCCTGCTAAACCCAGAAAGCTACGAACCTCACTGACTGTGGAAGGTCGGGTCCAACCAGTGACTGCCTCTATCTTAGCTGGATCCACAGAGACTCCAGCCTTAGAAACCACGTGGCCCAGAAAAGACACCTGCTTCAGCCAAAACTCGCATTTCGAGAACTTTGCATATAACTTATTATCCCGAAGTGTTTGCAAGACCATACGTAAATGCTCCTCGTGTTCGGCCTCCGTCTTAGAGTATATCAAGATATCGTCGATAAACACATTCACGAAAGTATCTAGGAACTCCCTGAACACTCTGTTCATCAAGTCCATAAACACCGCCGGAGCATTCGTCAAACCAAAAGACATCACAATAAACTCGTAGTGTCCATATCTGGATCGAAATGCTGTCTTCGGTATATCCTCCTCCTTAATCCTCAGCTGATGATATCCTGACCGAAGATCAATCTTAGAGAACACTGTGGCTCCCTGTAACTGGTCAAATAGATCGTCTATCCTGGGTAAGGGATATCTGTTCTTTACCGTTACTTTGTTCAACTCCCTATAGTCAATGCATAGACGCATCGACCATCCTTCTTCTTAACGAATAAGACTGGCGCACCCCAAGGTGACACGCTCGGTCGAATGAATCCCTTATCAAGCAATTCCTGTAACTGTACCTTCAGTTCTTTCAGTTCTGCGGGGGCCATTCTGTAAGGGGCTCTGGATATAGGAACCGTGCCCGGCTCCAACTCTATGGCAAACTCAACCTCCCTGTGCGGAGGTAACCCTGGAAGTTCCTCAGGAAAAACGTCCGGATAG

mRNA sequence

ATGAATCCCTTATCAAGCAATTCCTGTAACTGTACCTTCAGTTCTTTCAGGGCTCTGGATATAGGAACCGTGCCCGGCTCCAACTCTATGGCAAACTCAACCTCCCTGTGCGGAGGTAACCCTGGAAGTTCCTCAGGAAAAACGTCCGGATAG

Coding sequence (CDS)

ATGAATCCCTTATCAAGCAATTCCTGTAACTGTACCTTCAGTTCTTTCAGGGCTCTGGATATAGGAACCGTGCCCGGCTCCAACTCTATGGCAAACTCAACCTCCCTGTGCGGAGGTAACCCTGGAAGTTCCTCAGGAAAAACGTCCGGATAG

Protein sequence

MNPLSSNSCNCTFSSFRALDIGTVPGSNSMANSTSLCGGNPGSSSGKTSG
Homology
[Close]
BLAST of IVF0005510 vs. ExPASy TrEMBL
Match: A0A5D3CR86 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 1  MNPLSSNSCNCTFSSFRAL--------DIGTVPGSNSMANSTSLCGGNPGSSSGKTS 50
          M PLS++SCNC F+SF +L        +IG VPG+NSM NS SL GG P  SSG TS
Sbjct: 1  MYPLSTSSCNCIFNSFSSLVAILYGACEIGAVPGNNSMVNSISLSGGKPDRSSGNTS 57

[Close]
BLAST of IVF0005510 vs. NCBI nr
Match: KAF5760469.1 (hypothetical protein HanXRQr2_Chr16g0753871 [Helianthus annuus])

HSP 1 Score: 59.7 bits (143), Expect = 1.31e-09
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 1  MNPLSSNSCNCTFSSFR--------ALDIGTVPGSNSMANSTSLCGGNPGSSSGKTS 49
          MNP S +SCNC+F+SF         AL+IG+ PG  S+ NSTS  GGNPGSSSGKTS
Sbjct: 22 MNPRSRSSCNCSFNSFNSNGAIRYGALEIGSAPGIRSIVNSTSRSGGNPGSSSGKTS 78

[Close]
BLAST of IVF0005510 vs. NCBI nr
Match: TYK14095.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 7.24e-07
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 1  MNPLSSNSCNCTFSSFRAL--------DIGTVPGSNSMANSTSLCGGNPGSSSGKTS 49
          M PLS++SCNC F+SF +L        +IG VPG+NSM NS SL GG P  SSG TS
Sbjct: 1  MYPLSTSSCNCIFNSFSSLVAILYGACEIGAVPGNNSMVNSISLSGGKPDRSSGNTS 57

[Close]
BLAST of IVF0005510 vs. NCBI nr
Match: MCI78398.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 47.4 bits (111), Expect = 2.57e-05
Identity = 32/58 (55.17%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 1  MNPLSSNSCNCTFSSFR--------ALDIGTVPGSNSMANSTSLCGGNPGSSSGKTSG 50
          MN  SSNS NC F+ F         A+DIG VPG  SMANSTSL GG    S G TSG
Sbjct: 1  MNLFSSNSSNCFFNFFNSDADILYGAIDIGLVPGIKSMANSTSLSGGKSDISPGNTSG 58

[Close]
BLAST of IVF0005510 vs. NCBI nr
Match: KAF5817431.1 (hypothetical protein HanXRQr2_Chr02g0052921 [Helianthus annuus])

HSP 1 Score: 46.2 bits (108), Expect = 1.57e-04
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 1  MNPLSSNSCNCTFSSF--------RALDIGTVPGSNSMANSTSLCGGNPGSSSGKTSG 50
          + PL+S S +C  +SF         AL IG  PG  S+ NST L GG PGSSSGKTSG
Sbjct: 26 IKPLASRSSSCVLNSFISVGANLYGALAIGAAPGMMSILNSTCLSGGKPGSSSGKTSG 83

[Close]
BLAST of IVF0005510 vs. NCBI nr
Match: CAA3028001.1 (suppressor of mec-8 and unc-52 homolog 1, partial [Olea europaea subsp. europaea])

HSP 1 Score: 47.8 bits (112), Expect = 2.00e-04
Identity = 29/57 (50.88%), Postives = 33/57 (57.89%), Query Frame = 0 

Query: 1   MNPLSSNSCNCTFSS--------FRALDIGTVPGSNSMANSTSLCGGNPGSSSGKTS 49
           M P S NS NC F+S        + ALD G  PG+ S+ NST L GG PG SSG TS
Sbjct: 200 MKPFSINSSNCNFNSWSSFGAIRYGALDTGAAPGTKSIVNSTCLSGGMPGKSSGNTS 256

The following BLAST results are available for this feature:
BLAST of IVF0005510 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0005510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CR862.2e-0456.14Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 P... [more]
BLAST of IVF0005510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5760469.11.31e-0959.65hypothetical protein HanXRQr2_Chr16g0753871 [Helianthus annuus][more]
TYK14095.17.24e-0756.14pol protein [Cucumis melo var. makuwa][more]
MCI78398.12.57e-0555.17hypothetical protein [Trifolium medium][more]
KAF5817431.11.57e-0451.72hypothetical protein HanXRQr2_Chr02g0052921 [Helianthus annuus][more]
CAA3028001.12.00e-0450.88suppressor of mec-8 and unc-52 homolog 1, partial [Olea europaea subsp. europaea... [more]
BLAST of IVF0005510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005510.1IVF0005510.1mRNA