IVF0005396 (gene) Melon (IVF77) v1

Overview
NameIVF0005396
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr09: 14417077 .. 14417280 (-)
RNA-Seq ExpressionIVF0005396
SyntenyIVF0005396
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGTAAGCAAGCTTTAGCCGAGGCTCTTAAGAAATACCAGCCACTCACACTCAAATCAAGCAAATCCGGTAAAGAGGTTGAAGAGGCTCATTTTGGCAGTTCTGTAACGGAACAAGTCAATGGAGTTGAGGTTCAGTTATCTAATGATAAAATTGATGCTTTGCTCGCGTTAGTCTTCGGAGAGACGATGAGGAAATAA

mRNA sequence

ATGTCTGGTAAGCAAGCTTTAGCCGAGGCTCTTAAGAAATACCAGCCACTCACACTCAAATCAAGCAAATCCGGTAAAGAGGTTGAAGAGGCTCATTTTGGCAGTTCTGTAACGGAACAAGTCAATGGAGTTGAGGTTCAGTTATCTAATGATAAAATTGATGCTTTGCTCGCGTTAGTCTTCGGAGAGACGATGAGGAAATAA

Coding sequence (CDS)

ATGTCTGGTAAGCAAGCTTTAGCCGAGGCTCTTAAGAAATACCAGCCACTCACACTCAAATCAAGCAAATCCGGTAAAGAGGTTGAAGAGGCTCATTTTGGCAGTTCTGTAACGGAACAAGTCAATGGAGTTGAGGTTCAGTTATCTAATGATAAAATTGATGCTTTGCTCGCGTTAGTCTTCGGAGAGACGATGAGGAAATAA

Protein sequence

MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLALVFGETMRK
Homology
BLAST of IVF0005396 vs. ExPASy TrEMBL
Match: A0A5A7TY17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00510 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLAL 60
          MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLA+
Sbjct: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLAV 59

BLAST of IVF0005396 vs. NCBI nr
Match: KAA0046251.1 (uncharacterized protein E6C27_scaffold284G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 1.05e-29
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLAL 59
          MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLA+
Sbjct: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQVNGVEVQLSNDKIDALLAV 59

BLAST of IVF0005396 vs. NCBI nr
Match: KAA0060686.1 (hypothetical protein E6C27_scaffold22G005880 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 1.00e-06
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQ-----------VNGVEVQLS 60
          MS KQAL EAL KYQ +  K+S S    E+   GS + E+           +N VE+QLS
Sbjct: 1  MSVKQALTEALMKYQQIVGKASLSNPRAEKTPSGSPMLEKRTEKCLFEKVVINEVEIQLS 60

Query: 61 NDKIDALLALVFGETMRK 67
           DK+  LL +V GET ++
Sbjct: 61 EDKLSDLLIIVSGETSKR 78

BLAST of IVF0005396 vs. NCBI nr
Match: KGN44567.1 (hypothetical protein Csa_016483 [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 1.32e-06
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQ-----------VNGVEVQLS 60
          M GKQ L +ALKKYQ    K+S     VE + FGS V EQ           +NGV++QL 
Sbjct: 1  MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60

Query: 61 NDKIDALLALVFGETMRK 67
           DK+  LLA+V  ET ++
Sbjct: 61 EDKLGNLLAIVSRETSKR 78

BLAST of IVF0005396 vs. NCBI nr
Match: TYK04360.1 (hypothetical protein E5676_scaffold675G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.11e-05
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQ-----------VNGVEVQLS 60
          M GKQ L EAL KYQ +  K+S   + VE+  F   + EQ           +N V +QL 
Sbjct: 1  MYGKQPLTEALMKYQEIIAKTSPYNEGVEKTSFDGLMPEQGREERPLKMVVINEVAIQLL 60

Query: 61 NDKIDALLALVFGETMRK 67
           DK   LLA++FGET+++
Sbjct: 61 EDKSGDLLAIIFGETLKR 78

BLAST of IVF0005396 vs. NCBI nr
Match: TYK03307.1 (hypothetical protein E5676_scaffold298G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 6.58e-05
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 1  MSGKQALAEALKKYQPLTLKSSKSGKEVEEAHFGSSVTEQ-----------VNGVEVQLS 60
          MS KQAL EAL KYQ +  K+S S  + E+   GS + E+           +N VE+QL 
Sbjct: 1  MSVKQALTEALMKYQQIVGKASLSNAKAEKTPSGSPMLEKRTEKCLFKKVVINEVEIQLP 60

Query: 61 NDKIDALLALVFGETMRK 67
           DK+  LL +V  ET ++
Sbjct: 61 EDKLSDLLIIVSRETSKR 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TY176.0e-2198.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0046251.11.05e-2998.31uncharacterized protein E6C27_scaffold284G00510 [Cucumis melo var. makuwa][more]
KAA0060686.11.00e-0642.31hypothetical protein E6C27_scaffold22G005880 [Cucumis melo var. makuwa][more]
KGN44567.11.32e-0643.59hypothetical protein Csa_016483 [Cucumis sativus][more]
TYK04360.11.11e-0539.74hypothetical protein E5676_scaffold675G00270 [Cucumis melo var. makuwa][more]
TYK03307.16.58e-0539.74hypothetical protein E5676_scaffold298G001510 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005396.1IVF0005396.1mRNA