IVF0005366 (gene) Melon (IVF77) v1

Overview
NameIVF0005366
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr05: 8803025 .. 8803342 (-)
RNA-Seq ExpressionIVF0005366
SyntenyIVF0005366
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCACTTGTCGTCAATTACTCAAGAGAGTAAGTAGCAAGGATGTGGCTAATGCGTGCAAGGACGAGTTTGGAGACAAACTCCATCTTGGCGAGATGACTTCCATCACTTGTGTCCCAAAAGGAGAACAAGTGCGAGTATTTGGTGCCAAGAGATTGTCACCCTTAAAAGCAAAGTACTATAAGTCTTATAAGCAACAACTGCTAGATTTACATCGCTTAATAAAGTTTTGTCATTTGCATCCTGAGAGGCGAGTAAATGTGGCATTTAAGAAAATAAGAGGTGCTCGACTTAATAATAAGTTGGTTAACTGA

mRNA sequence

ATGGCTAGCACTTGTCGTCAATTACTCAAGAGAGTAAGTAGCAAGGATGTGGCTAATGCGTGCAAGGACGAGTTTGGAGACAAACTCCATCTTGGCGAGATGACTTCCATCACTTGTGTCCCAAAAGGAGAACAAGTGCGAGTATTTGGTGCCAAGAGATTGTCACCCTTAAAAGCAAAGTACTATAAGTCTTATAAGCAACAACTGCTAGATTTACATCGCTTAATAAAGTTTTGTCATTTGCATCCTGAGAGGCGAGTAAATGTGGCATTTAAGAAAATAAGAGGTGCTCGACTTAATAATAAGTTGGTTAACTGA

Coding sequence (CDS)

ATGGCTAGCACTTGTCGTCAATTACTCAAGAGAGTAAGTAGCAAGGATGTGGCTAATGCGTGCAAGGACGAGTTTGGAGACAAACTCCATCTTGGCGAGATGACTTCCATCACTTGTGTCCCAAAAGGAGAACAAGTGCGAGTATTTGGTGCCAAGAGATTGTCACCCTTAAAAGCAAAGTACTATAAGTCTTATAAGCAACAACTGCTAGATTTACATCGCTTAATAAAGTTTTGTCATTTGCATCCTGAGAGGCGAGTAAATGTGGCATTTAAGAAAATAAGAGGTGCTCGACTTAATAATAAGTTGGTTAACTGA

Protein sequence

MASTCRQLLKRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKRLSPLKAKYYKSYKQQLLDLHRLIKFCHLHPERRVNVAFKKIRGARLNNKLVN
Homology
BLAST of IVF0005366 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 0

Query: 1   MASTCRQLLKRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKRLSPLKAK 60
           MA  CRQLL+RV+SKD+AN CK+EF   LH+ E+TSITCVPKGEQV V  A+RL PLK K
Sbjct: 1   MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEK 60

Query: 61  YYKSYKQQLLDLHRLIKFCHLHPERRVNVAFKKIRGARLNNKLV 105
           YYKSYKQQL D++ L+KF HLHP+RR +V FK +RGA LN   +
Sbjct: 61  YYKSYKQQLQDIYGLVKFSHLHPKRRASVMFKALRGAHLNRTTI 104

BLAST of IVF0005366 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.1e-08
Identity = 28/44 (63.64%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 10 KRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKR 54
          ++ SSKD+ANACK++FGD+L+L ++TSI CVPKGEQV V+G +R
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0005366 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 8   LLKRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKRLSPLKAKYYKSYK 67
           L++R SSKDV N C++EFGD LH G++TSI C P+  QV   GA+RL  L  K+Y  YK
Sbjct: 89  LVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFYK 147

BLAST of IVF0005366 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 1.30e-39
Identity = 68/100 (68.00%), Postives = 81/100 (81.00%), Query Frame = 0

Query: 1   MASTCRQLLKRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKRLSPLKAK 60
           MA  CRQLL+RV+SKD+AN CK+EF   LH+ E+TSITCVPKGEQV V  A+RL PLK K
Sbjct: 1   MARACRQLLERVTSKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEK 60

Query: 61  YYKSYKQQLLDLHRLIKFCHLHPERRVNVAFKKIRGARLN 100
           YYKSYKQQL D++ L+KF HLHP+RR +V FK +RGA LN
Sbjct: 61  YYKSYKQQLQDIYGLVKFSHLHPKRRASVMFKALRGAHLN 100

BLAST of IVF0005366 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.32e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 8   LLKRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKRLSPLKAKYYKSYK 66
           L++R SSKDV N C++EFGD LH G++TSI C P+  QV   GA+RL  L  K+Y  YK
Sbjct: 89  LVERPSSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFYK 147

BLAST of IVF0005366 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.63e-10
Identity = 28/44 (63.64%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 10 KRVSSKDVANACKDEFGDKLHLGEMTSITCVPKGEQVRVFGAKR 53
          ++ SSKD+ANACK++FGD+L+L ++TSI CVPKGEQV V+G +R
Sbjct: 38 QKASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0005366 vs. NCBI nr
Match: TYK21449.1 (hypothetical protein E5676_scaffold609G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 2.00e-04
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 17 VANACKDEFGDKLHLGEMTSITCVPKGEQV 46
          + NA K+EFGDKLHLG +TSI CV KGEQV
Sbjct: 1  MVNAYKEEFGDKLHLGGITSIICVLKGEQV 30

BLAST of IVF0005366 vs. NCBI nr
Match: KAA0051792.1 (hypothetical protein E6C27_scaffold60G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 2.43e-04
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 17 VANACKDEFGDKLHLGEMTSITCVPKGEQV 46
          + NA K+EFGDKLHLG +TSI CV KGEQV
Sbjct: 1  MVNAYKEEFGDKLHLGGITSIICVLKGEQV 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9511.3e-3065.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DDG59.1e-0863.64Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ... [more]
A0A5D3CY291.2e-0754.24Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK07860.11.30e-3968.00uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa][more]
KAA0032002.11.32e-1054.24Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Tran... [more]
KAA0026294.14.63e-1063.64cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >... [more]
TYK21449.12.00e-0473.33hypothetical protein E5676_scaffold609G001190 [Cucumis melo var. makuwa][more]
KAA0051792.12.43e-0473.33hypothetical protein E6C27_scaffold60G002010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005366.1IVF0005366.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane