IVF0005346 (gene) Melon (IVF77) v1

Overview


Name	IVF0005346
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L13
Location	chr10: 15732680 .. 15732844 (+)
RNA-Seq Expression	IVF0005346
Synteny	IVF0005346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGGTCACAGAAGACATGAAGTCTTTCAAGGCTTATCACAAGCTTCATGTTGAACAAGCAAATGCCCGTCATGTTGGTGCTCAGATGAAGAAGGTTGCTGAGGCAGAAAAGGGAGAGAAGAAGTAA

mRNA sequence

ATGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGGTCACAGAAGACATGAAGTCTTTCAAGGCTTATCACAAGCTTCATGTTGAACAAGCAAATGCCCGTCATGTTGGTGCTCAGATGAAGAAGGTTGCTGAGGCAGAAAAGGGAGAGAAGAAGTAA

Coding sequence (CDS)

ATGCCTATTGGATTAGAGAAGCCATCAGTGGAGCTTGTGAAGGTCACAGAAGACATGAAGTCTTTCAAGGCTTATCACAAGCTTCATGTTGAACAAGCAAATGCCCGTCATGTTGGTGCTCAGATGAAGAAGGTTGCTGAGGCAGAAAAGGGAGAGAAGAAGTAA

Protein sequence

MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK

Homology

[Close]

BLAST of IVF0005346 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-10
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 153 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-10
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI   K ++ELVK+T D+K+FKAY K+ +E+ NARH GA+ K+ AEAEK EKK
Sbjct: 153 MPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy Swiss-Prot
Match: P49627 (60S ribosomal protein L13 OS=Nicotiana tabacum OX=4097 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-08
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI  EK  + L KV + MKSF AY KL VE+ N RH+GA+MK+ AEAEK EKK
Sbjct: 149 MPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARMKRAAEAEKEEKK 202

[Close]

BLAST of IVF0005346 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI  E P++ELVK+T DMK F AY K+ +E  N RH G + K+ AEAEK EKK
Sbjct: 153 MPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-08
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI  EK ++ELVK+T +MKS  AY K+ +E+ N RH GA+ K+ A+AEK EKK
Sbjct: 153 MPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPIGLEKPSVELVKVTEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKVTEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy TrEMBL
Match: A0A5J5BBP7 (60S ribosomal protein L13 OS=Nyssa sinensis OX=561372 GN=F0562_026821 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI LEKPSVELVKVT++MKSFKAY KL VE+AN RHVGA+MKK AEAEK EKK
Sbjct: 153 MPIELEKPSVELVKVTDEMKSFKAYAKLRVERANTRHVGARMKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. ExPASy TrEMBL
Match: A0A5N5JRQ2 (60S ribosomal protein L13 OS=Salix brachista OX=2182728 GN=DKX38_024114 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           MPI LEKPSVELVKVTE+MKSFKAY KL VE+ NARHVGA++K+ AEAEK EKK
Sbjct: 154 MPIALEKPSVELVKVTEEMKSFKAYDKLRVERTNARHVGARLKRAAEAEKEEKK 207

[Close]

BLAST of IVF0005346 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.44e-20
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 54
           MPIGLEKPSVELVKVTEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKVTEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.44e-20
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 54
           MPIGLEKPSVELVK+TEDMKSFKAY KL VE+ANARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. NCBI nr
Match: XP_038907267.1 (60S ribosomal protein L13-3-like [Benincasa hispida] >XP_038907268.1 60S ribosomal protein L13-3-like [Benincasa hispida])

HSP 1 Score: 86.7 bits (213), Expect = 2.71e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 54
           MPIGLEKPSVELVKVTEDMK+FKAY KL VE+ NARHVGA++KK AEAEK EKK
Sbjct: 153 MPIGLEKPSVELVKVTEDMKAFKAYDKLRVERTNARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. NCBI nr
Match: KAG9133924.1 (hypothetical protein Leryth_004642 [Lithospermum erythrorhizon])

HSP 1 Score: 81.3 bits (199), Expect = 3.35e-18
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 54
           +PIGLEKP+VELVK+TEDMKSF+AYHKL +E+ NARHVG + K+ AEAEK +KK
Sbjct: 55  LPIGLEKPAVELVKITEDMKSFRAYHKLRLERTNARHVGVRAKRAAEAEKEDKK 108

[Close]

BLAST of IVF0005346 vs. NCBI nr
Match: MBA0553449.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 80.9 bits (198), Expect = 3.45e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 54
          MPI  EKPSVELVKVTE+MKSFKAY+KL VE+ NARH+GA++KK AEAEK +KK
Sbjct: 43 MPISREKPSVELVKVTEEMKSFKAYNKLRVERTNARHIGARLKKAAEAEKEDKK 96

[Close]

BLAST of IVF0005346 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 153 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 153 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 153 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of IVF0005346 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 151 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 204

[Close]

BLAST of IVF0005346 vs. TAIR 10
Match: AT3G49010.5 (breast basic conserved 1 )

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 1   MPIGLEKPSVELVKVTEDMKSFKAYHKLHVEQANARHVGAQMKKVAEAEKGEKK 55
           +PI  EKP++ELVK+T +MKSFKA+ K+ +E+ N RH GA+ K+ AEAEK EKK
Sbjct: 100 LPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 153

The following BLAST results are available for this feature:

BLAST of IVF0005346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	3.7e-10	59.26	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	8.2e-10	59.26	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P49627	1.2e-08	61.11	60S ribosomal protein L13 OS=Nicotiana tabacum OX=4097 GN=RPL13 PE=2 SV=1	[more]
Q9SMT4	1.5e-08	57.41	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]
P41129	2.6e-08	55.56	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]

BLAST of IVF0005346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTG8	5.1e-15	87.04	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]
A0A5A7UNR2	6.7e-15	85.19	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KKX2	6.7e-15	85.19	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
A0A5J5BBP7	4.8e-13	81.48	60S ribosomal protein L13 OS=Nyssa sinensis OX=561372 GN=F0562_026821 PE=3 SV=1	[more]
A0A5N5JRQ2	4.8e-13	79.63	60S ribosomal protein L13 OS=Salix brachista OX=2182728 GN=DKX38_024114 PE=3 SV=...	[more]

BLAST of IVF0005346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467320.1	2.44e-20	87.04	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
XP_004143667.1	3.44e-20	85.19	60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protei...	[more]
XP_038907267.1	2.71e-19	83.33	60S ribosomal protein L13-3-like [Benincasa hispida] >XP_038907268.1 60S ribosom...	[more]
KAG9133924.1	3.35e-18	72.22	hypothetical protein Leryth_004642 [Lithospermum erythrorhizon]	[more]
MBA0553449.1	3.45e-18	75.93	hypothetical protein [Gossypium lobatum]	[more]

BLAST of IVF0005346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	2.6e-11	59.26	breast basic conserved 1	[more]
AT3G49010.2	2.6e-11	59.26	breast basic conserved 1	[more]
AT3G49010.3	2.6e-11	59.26	breast basic conserved 1	[more]
AT3G49010.4	2.6e-11	59.26	breast basic conserved 1	[more]
AT3G49010.5	2.6e-11	59.26	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.110		coord: 14..54 e-value: 5.7E-12 score: 47.5
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 1..54
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005346.2	IVF0005346.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome